data_YXZ
#

_chem_comp.id                                   YXZ
_chem_comp.name                                 "chloro[N,N-di(pyridin-2-yl-kappaN)pentane-1,5-diamine]ruthenium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H20 Cl N4 Ru"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-05-24
_chem_comp.pdbx_modified_date                   2014-06-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       392.869
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YXZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       4KP9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YXZ  CL   CL   CL  0  0  N  N  N  -2.051  -13.322  -23.919  ?  ?  ?  CL   YXZ   1  
YXZ  CAL  CAL  C   0  1  Y  N  N  -4.137   -8.872  -28.234  ?  ?  ?  CAL  YXZ   2  
YXZ  CAH  CAH  C   0  1  Y  N  N  -3.726   -9.061  -29.576  ?  ?  ?  CAH  YXZ   3  
YXZ  CAF  CAF  C   0  1  Y  N  N  -3.102  -10.217  -29.888  ?  ?  ?  CAF  YXZ   4  
YXZ  CAJ  CAJ  C   0  1  Y  N  N  -2.869  -11.227  -28.860  ?  ?  ?  CAJ  YXZ   5  
YXZ  NAU  NAU  N   0  1  Y  N  N  -3.278  -11.004  -27.579  ?  ?  ?  NAU  YXZ   6  
YXZ  CBA  CBA  C   0  1  Y  N  N  -3.881   -9.904  -27.235  ?  ?  ?  CBA  YXZ   7  
YXZ  NBF  NBF  N   0  1  N  N  N  -4.308   -9.710  -25.851  ?  ?  ?  NBF  YXZ   8  
YXZ  CBB  CBB  C   0  1  Y  N  N  -5.211  -10.656  -25.289  ?  ?  ?  CBB  YXZ   9  
YXZ  CAM  CAM  C   0  1  Y  N  N  -6.476  -10.253  -24.814  ?  ?  ?  CAM  YXZ  10  
YXZ  CAI  CAI  C   0  1  Y  N  N  -7.354  -11.253  -24.257  ?  ?  ?  CAI  YXZ  11  
YXZ  CAG  CAG  C   0  1  Y  N  N  -6.941  -12.612  -24.207  ?  ?  ?  CAG  YXZ  12  
YXZ  CAK  CAK  C   0  1  Y  N  N  -5.666  -12.952  -24.710  ?  ?  ?  CAK  YXZ  13  
YXZ  NAV  NAV  N   0  1  Y  N  N  -4.851  -11.976  -25.230  ?  ?  ?  NAV  YXZ  14  
YXZ  CAR  CAR  C   0  1  N  N  N  -3.658   -8.699  -25.015  ?  ?  ?  CAR  YXZ  15  
YXZ  CAP  CAP  C   0  1  N  N  N  -4.234   -7.260  -25.104  ?  ?  ?  CAP  YXZ  16  
YXZ  CAN  CAN  C   0  1  N  N  N  -3.794   -6.221  -24.108  ?  ?  ?  CAN  YXZ  17  
YXZ  CAO  CAO  C   0  1  N  N  N  -2.912   -5.076  -24.622  ?  ?  ?  CAO  YXZ  18  
YXZ  CAQ  CAQ  C   0  1  N  N  N  -3.089   -3.711  -24.018  ?  ?  ?  CAQ  YXZ  19  
YXZ  NBE  NBE  N   0  1  N  N  N  -2.181   -3.281  -22.947  ?  ?  ?  NBE  YXZ  20  
YXZ  RU   RU   RU  0  0  N  N  N  -2.881  -12.633  -25.993  ?  ?  ?  RU   YXZ  21  
YXZ  H1   H1   H   0  1  N  N  N  -4.642   -7.961  -27.949  ?  ?  ?  H1   YXZ  22  
YXZ  H2   H2   H   0  1  N  N  N  -3.906   -8.305  -30.326  ?  ?  ?  H2   YXZ  23  
YXZ  H3   H3   H   0  1  N  N  N  -2.774  -10.395  -30.902  ?  ?  ?  H3   YXZ  24  
YXZ  H4   H4   H   0  1  N  N  N  -2.372  -12.152  -29.115  ?  ?  ?  H4   YXZ  25  
YXZ  H5   H5   H   0  1  N  N  N  -6.781   -9.218  -24.866  ?  ?  ?  H5   YXZ  26  
YXZ  H6   H6   H   0  1  N  N  N  -8.325  -10.969  -23.878  ?  ?  ?  H6   YXZ  27  
YXZ  H7   H7   H   0  1  N  N  N  -7.589  -13.370  -23.793  ?  ?  ?  H7   YXZ  28  
YXZ  H8   H8   H   0  1  N  N  N  -5.332  -13.979  -24.686  ?  ?  ?  H8   YXZ  29  
YXZ  H9   H9   H   0  1  N  N  N  -3.738   -9.028  -23.968  ?  ?  ?  H9   YXZ  30  
YXZ  H10  H10  H   0  1  N  N  N  -3.978   -6.875  -26.102  ?  ?  ?  H10  YXZ  31  
YXZ  H11  H11  H   0  1  N  N  N  -4.701   -5.771  -23.679  ?  ?  ?  H11  YXZ  32  
YXZ  H12  H12  H   0  1  N  N  N  -3.233   -6.740  -23.317  ?  ?  ?  H12  YXZ  33  
YXZ  H13  H13  H   0  1  N  N  N  -1.866   -5.372  -24.456  ?  ?  ?  H13  YXZ  34  
YXZ  H14  H14  H   0  1  N  N  N  -3.099   -4.981  -25.702  ?  ?  ?  H14  YXZ  35  
YXZ  H15  H15  H   0  1  N  N  N  -2.990   -2.982  -24.836  ?  ?  ?  H15  YXZ  36  
YXZ  H16  H16  H   0  1  N  N  N  -4.110   -3.669  -23.611  ?  ?  ?  H16  YXZ  37  
YXZ  H17  H17  H   0  1  N  N  N  -2.426   -2.357  -22.653  ?  ?  ?  H17  YXZ  38  
YXZ  H18  H18  H   0  1  N  N  N  -2.258   -3.909  -22.173  ?  ?  ?  H18  YXZ  39  
YXZ  H20  H20  H   0  1  N  N  N  -2.598   -8.654  -25.306  ?  ?  ?  H20  YXZ  40  
YXZ  H21  H21  H   0  1  N  N  N  -5.327   -7.347  -25.013  ?  ?  ?  H21  YXZ  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YXZ  CAF  CAH  DOUB  Y  N   1  
YXZ  CAF  CAJ  SING  Y  N   2  
YXZ  CAH  CAL  SING  Y  N   3  
YXZ  CAJ  NAU  DOUB  Y  N   4  
YXZ  CAL  CBA  DOUB  Y  N   5  
YXZ  NAU  CBA  SING  Y  N   6  
YXZ  NAU  RU   SING  N  N   7  
YXZ  CBA  NBF  SING  N  N   8  
YXZ  RU   NAV  SING  N  N   9  
YXZ  RU   CL   SING  N  N  10  
YXZ  NBF  CBB  SING  N  N  11  
YXZ  NBF  CAR  SING  N  N  12  
YXZ  CBB  NAV  DOUB  Y  N  13  
YXZ  CBB  CAM  SING  Y  N  14  
YXZ  NAV  CAK  SING  Y  N  15  
YXZ  CAP  CAR  SING  N  N  16  
YXZ  CAP  CAN  SING  N  N  17  
YXZ  CAM  CAI  DOUB  Y  N  18  
YXZ  CAK  CAG  DOUB  Y  N  19  
YXZ  CAO  CAN  SING  N  N  20  
YXZ  CAO  CAQ  SING  N  N  21  
YXZ  CAI  CAG  SING  Y  N  22  
YXZ  CAQ  NBE  SING  N  N  23  
YXZ  CAL  H1   SING  N  N  24  
YXZ  CAH  H2   SING  N  N  25  
YXZ  CAF  H3   SING  N  N  26  
YXZ  CAJ  H4   SING  N  N  27  
YXZ  CAM  H5   SING  N  N  28  
YXZ  CAI  H6   SING  N  N  29  
YXZ  CAG  H7   SING  N  N  30  
YXZ  CAK  H8   SING  N  N  31  
YXZ  CAR  H9   SING  N  N  32  
YXZ  CAP  H10  SING  N  N  33  
YXZ  CAN  H11  SING  N  N  34  
YXZ  CAN  H12  SING  N  N  35  
YXZ  CAO  H13  SING  N  N  36  
YXZ  CAO  H14  SING  N  N  37  
YXZ  CAQ  H15  SING  N  N  38  
YXZ  CAQ  H16  SING  N  N  39  
YXZ  NBE  H17  SING  N  N  40  
YXZ  NBE  H18  SING  N  N  41  
YXZ  CAR  H20  SING  N  N  42  
YXZ  CAP  H21  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YXZ  SMILES            ACDLabs               12.01  "Cl[Ru]3n1ccccc1N(c2n3cccc2)CCCCCN"  
YXZ  InChI             InChI                 1.03   "InChI=1S/C15H20N4.ClH.Ru/c16-10-4-1-7-13-19(14-8-2-5-11-17-14)15-9-3-6-12-18-15;;/h2-3,5-6,8-9,11-12H,1,4,7,10,13,16H2;1H;/q;;+1/p-1"  
YXZ  InChIKey          InChI                 1.03   IIQHAXSUPAXJMA-UHFFFAOYSA-M  
YXZ  SMILES_CANONICAL  CACTVS                3.370  "NCCCCCN1c2ccccn2|[Ru](Cl)|n3ccccc13"  
YXZ  SMILES            CACTVS                3.370  "NCCCCCN1c2ccccn2|[Ru](Cl)|n3ccccc13"  
YXZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1=CC=[N]2C(=C1)N(C3=[N]([Ru]2Cl)C=CC=C3)CCCCCN"  
YXZ  SMILES            "OpenEye OEToolkits"  1.7.6  "C1=CC=[N]2C(=C1)N(C3=[N]([Ru]2Cl)C=CC=C3)CCCCCN"  
#
_pdbx_chem_comp_identifier.comp_id          YXZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "chloro[N,N-di(pyridin-2-yl-kappaN)pentane-1,5-diamine]ruthenium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YXZ  "Create component"  2013-05-24  PDBJ  
YXZ  "Initial release"   2014-06-25  RCSB  
##
