data_YOZ
# 
_chem_comp.id                                    YOZ 
_chem_comp.name                                  "(2S,5R)-5-amino-1-formyl-5-hydroxy-N-(piperidin-4-yl)piperidine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H22 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Relebactam, the acylated, desulfated, imine-hydrolysis intermediate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        270.328 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YOZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G2T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YOZ N1  N1  N 0 1 N N N N N N -10.602 4.469  -1.473 -3.820 0.534  1.394  N1  YOZ 1  
YOZ C1  C1  C 0 1 N N R N N N -9.340  3.979  -1.986 -3.827 0.644  -0.071 C1  YOZ 2  
YOZ O1  O1  O 0 1 N N N N N N -8.596  5.078  -2.520 -5.162 0.873  -0.525 O1  YOZ 3  
YOZ C2  C2  C 0 1 N N N N N N -8.509  3.290  -0.896 -2.934 1.810  -0.500 C2  YOZ 4  
YOZ C3  C3  C 0 1 N N N N N N -7.255  2.634  -1.477 -1.511 1.582  0.015  C3  YOZ 5  
YOZ C4  C4  C 0 1 N N S N N N -7.579  1.724  -2.664 -0.951 0.294  -0.597 C4  YOZ 6  
YOZ C5  C5  C 0 1 N N N N N N -8.229  0.417  -2.212 0.394  -0.010 0.010  C5  YOZ 7  
YOZ O2  O2  O 0 1 N N N N N N -7.937  -0.075 -1.119 0.469  -0.398 1.156  O2  YOZ 8  
YOZ N2  N2  N 0 1 N N N N N N -9.128  -0.171 -2.998 1.515  0.149  -0.722 N2  YOZ 9  
YOZ C6  C6  C 0 1 N N N N N N -9.745  -1.454 -2.669 2.823  -0.147 -0.133 C6  YOZ 10 
YOZ C7  C7  C 0 1 N N N N N N -10.397 -2.104 -3.877 3.331  1.081  0.628  C7  YOZ 11 
YOZ C8  C8  C 0 1 N N N N N N -11.036 -3.432 -3.522 4.724  0.787  1.190  C8  YOZ 12 
YOZ N3  N3  N 0 1 N N N N N N -12.004 -3.264 -2.427 5.638  0.459  0.089  N3  YOZ 13 
YOZ C9  C9  C 0 1 N N N N N N -11.420 -2.611 -1.248 5.196  -0.744 -0.627 C9  YOZ 14 
YOZ C10 C10 C 0 1 N N N N N N -10.785 -1.275 -1.579 3.818  -0.496 -1.243 C10 YOZ 15 
YOZ N4  N4  N 0 1 N N N N N N -8.388  2.468  -3.645 -1.880 -0.808 -0.311 N4  YOZ 16 
YOZ C11 C11 C 0 1 N N N N N N -8.038  2.741  -4.913 -1.445 -1.938 0.280  C11 YOZ 17 
YOZ O3  O3  O 0 1 N N N N N N -8.565  3.573  -5.639 -2.202 -2.873 0.435  O3  YOZ 18 
YOZ C12 C12 C 0 1 N N N N N N -9.642  2.978  -3.107 -3.293 -0.655 -0.684 C12 YOZ 19 
YOZ H1  H1  H 0 1 N N N N N N -10.431 5.126  -0.738 -4.403 -0.230 1.702  H1  YOZ 20 
YOZ H2  H2  H 0 1 N N N N N N -11.110 4.917  -2.209 -2.879 0.435  1.745  H2  YOZ 21 
YOZ H4  H4  H 0 1 N N N N N N -8.408  5.700  -1.827 -5.784 0.171  -0.289 H4  YOZ 22 
YOZ H5  H5  H 0 1 N N N N N N -8.207  4.039  -0.150 -2.920 1.876  -1.588 H5  YOZ 23 
YOZ H6  H6  H 0 1 N N N N N N -9.125  2.518  -0.412 -3.325 2.739  -0.085 H6  YOZ 24 
YOZ H7  H7  H 0 1 N N N N N N -6.772  2.034  -0.692 -0.881 2.424  -0.271 H7  YOZ 25 
YOZ H8  H8  H 0 1 N N N N N N -6.565  3.422  -1.812 -1.527 1.492  1.101  H8  YOZ 26 
YOZ H9  H9  H 0 1 N N N N N N -6.624  1.463  -3.143 -0.847 0.417  -1.675 H9  YOZ 27 
YOZ H10 H10 H 0 1 N N N N N N -9.392  0.284  -3.849 1.455  0.459  -1.639 H10 YOZ 28 
YOZ H11 H11 H 0 1 N N N N N N -8.968  -2.135 -2.292 2.732  -0.989 0.553  H11 YOZ 29 
YOZ H12 H12 H 0 1 N N N N N N -9.631  -2.272 -4.648 3.384  1.933  -0.050 H12 YOZ 30 
YOZ H13 H13 H 0 1 N N N N N N -11.172 -1.429 -4.270 2.649  1.309  1.447  H13 YOZ 31 
YOZ H14 H14 H 0 1 N N N N N N -11.555 -3.831 -4.406 5.094  1.665  1.720  H14 YOZ 32 
YOZ H15 H15 H 0 1 N N N N N N -10.253 -4.137 -3.207 4.667  -0.056 1.878  H15 YOZ 33 
YOZ H16 H16 H 0 1 N N N N N N -12.766 -2.707 -2.757 5.738  1.240  -0.543 H16 YOZ 34 
YOZ H18 H18 H 0 1 N N N N N N -12.214 -2.449 -0.505 5.910  -0.979 -1.417 H18 YOZ 35 
YOZ H19 H19 H 0 1 N N N N N N -10.650 -3.272 -0.824 5.137  -1.580 0.069  H19 YOZ 36 
YOZ H20 H20 H 0 1 N N N N N N -10.303 -0.867 -0.678 3.483  -1.395 -1.762 H20 YOZ 37 
YOZ H21 H21 H 0 1 N N N N N N -11.562 -0.578 -1.927 3.879  0.331  -1.951 H21 YOZ 38 
YOZ H22 H22 H 0 1 N Y N N N N -7.218  2.175  -5.329 -0.421 -2.011 0.617  H22 YOZ 39 
YOZ H23 H23 H 0 1 N N N N N N -10.208 3.480  -3.906 -3.865 -1.501 -0.303 H23 YOZ 40 
YOZ H24 H24 H 0 1 N N N N N N -10.236 2.144  -2.705 -3.382 -0.610 -1.769 H24 YOZ 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YOZ O3  C11 DOUB N N 1  
YOZ C11 N4  SING N N 2  
YOZ C7  C8  SING N N 3  
YOZ C7  C6  SING N N 4  
YOZ N4  C12 SING N N 5  
YOZ N4  C4  SING N N 6  
YOZ C8  N3  SING N N 7  
YOZ C12 C1  SING N N 8  
YOZ N2  C6  SING N N 9  
YOZ N2  C5  SING N N 10 
YOZ C6  C10 SING N N 11 
YOZ C4  C5  SING N N 12 
YOZ C4  C3  SING N N 13 
YOZ O1  C1  SING N N 14 
YOZ N3  C9  SING N N 15 
YOZ C5  O2  DOUB N N 16 
YOZ C1  N1  SING N N 17 
YOZ C1  C2  SING N N 18 
YOZ C10 C9  SING N N 19 
YOZ C3  C2  SING N N 20 
YOZ N1  H1  SING N N 21 
YOZ N1  H2  SING N N 22 
YOZ O1  H4  SING N N 23 
YOZ C2  H5  SING N N 24 
YOZ C2  H6  SING N N 25 
YOZ C3  H7  SING N N 26 
YOZ C3  H8  SING N N 27 
YOZ C4  H9  SING N N 28 
YOZ N2  H10 SING N N 29 
YOZ C6  H11 SING N N 30 
YOZ C7  H12 SING N N 31 
YOZ C7  H13 SING N N 32 
YOZ C8  H14 SING N N 33 
YOZ C8  H15 SING N N 34 
YOZ N3  H16 SING N N 35 
YOZ C9  H18 SING N N 36 
YOZ C9  H19 SING N N 37 
YOZ C10 H20 SING N N 38 
YOZ C10 H21 SING N N 39 
YOZ C11 H22 SING N N 40 
YOZ C12 H23 SING N N 41 
YOZ C12 H24 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YOZ SMILES           ACDLabs              12.01 "OC1(N)CCC(C(=O)NC2CCNCC2)N(C=O)C1"                                                                                        
YOZ InChI            InChI                1.06  "InChI=1S/C12H22N4O3/c13-12(19)4-1-10(16(7-12)8-17)11(18)15-9-2-5-14-6-3-9/h8-10,14,19H,1-7,13H2,(H,15,18)/t10-,12+/m0/s1" 
YOZ InChIKey         InChI                1.06  SWVCDWJYHKCKJJ-CMPLNLGQSA-N                                                                                                
YOZ SMILES_CANONICAL CACTVS               3.385 "N[C@@]1(O)CC[C@H](N(C1)C=O)C(=O)NC2CCNCC2"                                                                                
YOZ SMILES           CACTVS               3.385 "N[C]1(O)CC[CH](N(C1)C=O)C(=O)NC2CCNCC2"                                                                                   
YOZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1C[C@@](CN([C@@H]1C(=O)NC2CCNCC2)C=O)(N)O"                                                                               
YOZ SMILES           "OpenEye OEToolkits" 2.0.7 "C1CC(CN(C1C(=O)NC2CCNCC2)C=O)(N)O"                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YOZ "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,5R)-5-amino-1-formyl-5-hydroxy-N-(piperidin-4-yl)piperidine-2-carboxamide"              
YOZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},5~{R})-5-azanyl-1-methanoyl-5-oxidanyl-~{N}-piperidin-4-yl-piperidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YOZ "Create component" 2023-02-15 RCSB 
YOZ "Initial release"  2023-08-09 RCSB 
YOZ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      YOZ 
_pdbx_chem_comp_synonyms.name         "Relebactam, the acylated, desulfated, imine-hydrolysis intermediate" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YOZ 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C11 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
