data_YJZ
# 
_chem_comp.id                                    YJZ 
_chem_comp.name                                  "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(2-methoxypyridin-4-yl)-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        450.487 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YJZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PGR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YJZ C01  C1  C 0 1 N N N N N N -20.455 -14.757 4.583  8.198  1.207  -0.027 C01  YJZ 1  
YJZ C03  C2  C 0 1 Y N N N N N -20.850 -13.417 6.487  5.887  0.680  -0.189 C03  YJZ 2  
YJZ C04  C3  C 0 1 Y N N N N N -21.404 -13.255 7.749  4.653  0.396  0.376  C04  YJZ 3  
YJZ C05  C4  C 0 1 Y N N N N N -21.144 -12.082 8.418  3.563  0.157  -0.465 C05  YJZ 4  
YJZ C06  C5  C 0 1 Y N N N N N -21.701 -11.884 9.792  2.227  -0.149 0.092  C06  YJZ 5  
YJZ C07  C6  C 0 1 Y N N N N N -22.179 -10.716 10.359 1.430  0.694  0.845  C07  YJZ 6  
YJZ C08  C7  C 0 1 N N N N N N -22.410 -9.398  9.752  1.772  2.066  1.235  C08  YJZ 7  
YJZ C12  C8  C 0 1 Y N N N N N -22.348 -12.233 11.956 0.270  -1.231 0.641  C12  YJZ 8  
YJZ C13  C9  C 0 1 Y N N N N N -22.660 -12.899 13.176 -0.650 -2.277 0.676  C13  YJZ 9  
YJZ C14  C10 C 0 1 N N S N N N -23.255 -12.099 14.327 -1.955 -2.111 1.412  C14  YJZ 10 
YJZ C15  C11 C 0 1 N N N N N N -22.672 -12.466 15.683 -2.591 -3.484 1.638  C15  YJZ 11 
YJZ C17  C12 C 0 1 N N N N N N -25.413 -13.448 14.759 -3.469 -0.011 1.059  C17  YJZ 12 
YJZ C18  C13 C 0 1 N N N N N N -26.814 -13.150 14.512 -4.312 0.420  -0.146 C18  YJZ 13 
YJZ C19  C14 C 0 1 N N N N N N -27.741 -12.747 15.644 -4.102 1.858  -0.620 C19  YJZ 14 
YJZ C20  C15 C 0 1 N N N N N N -28.812 -13.716 15.074 -5.615 1.895  -0.901 C20  YJZ 15 
YJZ C21  C16 C 0 1 N N N N N N -29.452 -14.697 16.058 -6.279 3.215  -0.503 C21  YJZ 16 
YJZ C23  C17 C 0 1 N N N N N N -27.817 -14.211 14.037 -5.763 0.788  0.159  C23  YJZ 17 
YJZ C25  C18 C 0 1 N N N N N N -25.502 -11.521 13.476 -3.274 -1.545 -0.631 C25  YJZ 18 
YJZ C27  C19 C 0 1 Y N N N N N -22.404 -14.248 13.202 -0.365 -3.462 0.035  C27  YJZ 19 
YJZ C28  C20 C 0 1 Y N N N N N -21.841 -14.912 12.101 0.833  -3.628 -0.647 C28  YJZ 20 
YJZ C29  C21 C 0 1 Y N N N N N -21.476 -14.261 10.927 1.750  -2.617 -0.695 C29  YJZ 21 
YJZ C30  C22 C 0 1 Y N N N N N -21.808 -12.878 10.824 1.482  -1.406 -0.052 C30  YJZ 22 
YJZ C31  C23 C 0 1 Y N N N N N -20.288 -11.147 7.824  3.769  0.216  -1.850 C31  YJZ 23 
YJZ C32  C24 C 0 1 Y N N N N N -19.790 -11.391 6.567  5.029  0.505  -2.328 C32  YJZ 24 
YJZ N11  N1  N 0 1 Y N N N N N -22.515 -10.923 11.625 0.263  0.038  1.171  N11  YJZ 25 
YJZ N16  N2  N 0 1 N N N N N N -24.723 -12.264 14.332 -2.861 -1.278 0.617  N16  YJZ 26 
YJZ N22  N3  N 0 1 N N N N N N -30.557 -15.390 15.433 -7.688 3.198  -0.917 N22  YJZ 27 
YJZ N33  N4  N 0 1 Y N N N N N -20.089 -12.509 5.899  6.035  0.725  -1.503 N33  YJZ 28 
YJZ O02  O1  O 0 1 N N N N N N -21.094 -14.590 5.831  6.953  0.920  0.615  O02  YJZ 29 
YJZ O09  O2  O 0 1 N N N N N N -22.372 -8.329  10.450 0.909  2.793  1.974  O09  YJZ 30 
YJZ O10  O3  O 0 1 N N N N N N -22.831 -9.370  8.550  2.834  2.549  0.891  O10  YJZ 31 
YJZ O24  O4  O 0 1 N N N N N N -26.791 -12.016 13.544 -4.108 -0.616 -1.136 O24  YJZ 32 
YJZ O26  O5  O 0 1 N N N N N N -25.198 -10.596 12.782 -2.928 -2.532 -1.249 O26  YJZ 33 
YJZ H012 H1  H 0 0 N N N N N N -20.729 -15.734 4.158  8.965  1.378  0.729  H012 YJZ 34 
YJZ H011 H2  H 0 0 N N N N N N -20.773 -13.957 3.898  8.487  0.363  -0.653 H011 YJZ 35 
YJZ H013 H3  H 0 0 N N N N N N -19.365 -14.710 4.720  8.091  2.098  -0.645 H013 YJZ 36 
YJZ H041 H4  H 0 0 N N N N N N -22.019 -14.025 8.191  4.536  0.360  1.449  H041 YJZ 37 
YJZ H141 H5  H 0 0 N N N N N N -23.030 -11.038 14.145 -1.771 -1.633 2.374  H141 YJZ 38 
YJZ H151 H6  H 0 0 N N N N N N -23.145 -11.853 16.464 -2.774 -3.963 0.676  H151 YJZ 39 
YJZ H153 H7  H 0 0 N N N N N N -22.862 -13.530 15.888 -1.916 -4.104 2.229  H153 YJZ 40 
YJZ H152 H8  H 0 0 N N N N N N -21.588 -12.281 15.678 -3.534 -3.365 2.170  H152 YJZ 41 
YJZ H172 H9  H 0 0 N N N N N N -25.090 -14.321 14.173 -2.699 0.730  1.274  H172 YJZ 42 
YJZ H171 H10 H 0 0 N N N N N N -25.237 -13.639 15.828 -4.101 -0.171 1.932  H171 YJZ 43 
YJZ H191 H11 H 0 0 N N N N N N -27.375 -13.015 16.646 -3.786 2.538  0.171  H191 YJZ 44 
YJZ H192 H12 H 0 0 N N N N N N -28.036 -11.687 15.632 -3.487 1.937  -1.517 H192 YJZ 45 
YJZ H201 H13 H 0 0 N N N N N N -29.600 -13.130 14.578 -5.880 1.575  -1.908 H201 YJZ 46 
YJZ H211 H14 H 0 0 N N N N N N -28.699 -15.431 16.379 -6.219 3.341  0.578  H211 YJZ 47 
YJZ H212 H15 H 0 0 N N N N N N -29.821 -14.143 16.934 -5.766 4.042  -0.995 H212 YJZ 48 
YJZ H231 H16 H 0 0 N N N N N N -28.149 -14.083 12.996 -6.478 0.012  -0.117 H231 YJZ 49 
YJZ H232 H17 H 0 0 N N N N N N -27.483 -15.248 14.191 -5.916 1.166  1.169  H232 YJZ 50 
YJZ H271 H18 H 0 0 N N N N N N -22.642 -14.812 14.092 -1.080 -4.270 0.064  H271 YJZ 51 
YJZ H281 H19 H 0 0 N N N N N N -21.684 -15.978 12.168 1.041  -4.564 -1.145 H281 YJZ 52 
YJZ H291 H20 H 0 0 N N N N N N -20.964 -14.780 10.130 2.680  -2.753 -1.227 H291 YJZ 53 
YJZ H311 H21 H 0 0 N N N N N N -20.021 -10.242 8.349  2.952  0.037  -2.533 H311 YJZ 54 
YJZ H321 H22 H 0 0 N N N N N N -19.141 -10.661 6.107  5.195  0.552  -3.395 H321 YJZ 55 
YJZ H111 H23 H 0 0 N N N N N N -22.845 -10.215 12.250 -0.460 0.417  1.695  H111 YJZ 56 
YJZ H1   H24 H 0 1 N N N N N N -30.965 -16.027 16.087 -8.149 4.060  -0.666 H1   YJZ 57 
YJZ H222 H25 H 0 0 N N N N N N -31.245 -14.725 15.142 -7.773 3.018  -1.906 H222 YJZ 58 
YJZ H2   H27 H 0 1 N N N N N N -22.690 -7.600  9.931  1.178  3.692  2.206  H2   YJZ 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YJZ C01 O02  SING N N 1  
YJZ O02 C03  SING N N 2  
YJZ N33 C03  DOUB Y N 3  
YJZ N33 C32  SING Y N 4  
YJZ C03 C04  SING Y N 5  
YJZ C32 C31  DOUB Y N 6  
YJZ C04 C05  DOUB Y N 7  
YJZ C31 C05  SING Y N 8  
YJZ C05 C06  SING N N 9  
YJZ O10 C08  DOUB N N 10 
YJZ C08 C07  SING N N 11 
YJZ C08 O09  SING N N 12 
YJZ C06 C07  DOUB Y N 13 
YJZ C06 C30  SING Y N 14 
YJZ C07 N11  SING Y N 15 
YJZ C30 C29  DOUB Y N 16 
YJZ C30 C12  SING Y N 17 
YJZ C29 C28  SING Y N 18 
YJZ N11 C12  SING Y N 19 
YJZ C12 C13  DOUB Y N 20 
YJZ C28 C27  DOUB Y N 21 
YJZ O26 C25  DOUB N N 22 
YJZ C13 C27  SING Y N 23 
YJZ C13 C14  SING N N 24 
YJZ C25 O24  SING N N 25 
YJZ C25 N16  SING N N 26 
YJZ O24 C18  SING N N 27 
YJZ C23 C18  SING N N 28 
YJZ C23 C20  SING N N 29 
YJZ C14 N16  SING N N 30 
YJZ C14 C15  SING N N 31 
YJZ N16 C17  SING N N 32 
YJZ C18 C17  SING N N 33 
YJZ C18 C19  SING N N 34 
YJZ C20 C19  SING N N 35 
YJZ C20 C21  SING N N 36 
YJZ N22 C21  SING N N 37 
YJZ C01 H012 SING N N 38 
YJZ C01 H011 SING N N 39 
YJZ C01 H013 SING N N 40 
YJZ C04 H041 SING N N 41 
YJZ C14 H141 SING N N 42 
YJZ C15 H151 SING N N 43 
YJZ C15 H153 SING N N 44 
YJZ C15 H152 SING N N 45 
YJZ C17 H172 SING N N 46 
YJZ C17 H171 SING N N 47 
YJZ C19 H191 SING N N 48 
YJZ C19 H192 SING N N 49 
YJZ C20 H201 SING N N 50 
YJZ C21 H211 SING N N 51 
YJZ C21 H212 SING N N 52 
YJZ C23 H231 SING N N 53 
YJZ C23 H232 SING N N 54 
YJZ C27 H271 SING N N 55 
YJZ C28 H281 SING N N 56 
YJZ C29 H291 SING N N 57 
YJZ C31 H311 SING N N 58 
YJZ C32 H321 SING N N 59 
YJZ N11 H111 SING N N 60 
YJZ N22 H1   SING N N 61 
YJZ N22 H222 SING N N 62 
YJZ O09 H2   SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YJZ InChI            InChI                1.06  "InChI=1S/C24H26N4O5/c1-13(28-12-24(33-23(28)31)9-14(10-24)11-25)16-4-3-5-17-19(21(22(29)30)27-20(16)17)15-6-7-26-18(8-15)32-2/h3-8,13-14,27H,9-12,25H2,1-2H3,(H,29,30)/t13-,14-,24-/m0/s1" 
YJZ InChIKey         InChI                1.06  HDJIGCDFVMJXHP-XACMVJRISA-N                                                                                                                                                                 
YJZ SMILES_CANONICAL CACTVS               3.385 "COc1cc(ccn1)c2c([nH]c3c(cccc23)[C@H](C)N4C[C@@]5(C[C@H](CN)C5)OC4=O)C(O)=O"                                                                                                                
YJZ SMILES           CACTVS               3.385 "COc1cc(ccn1)c2c([nH]c3c(cccc23)[CH](C)N4C[C]5(C[CH](CN)C5)OC4=O)C(O)=O"                                                                                                                    
YJZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccnc(c3)OC)C(=O)O)N4CC5(CC(C5)CN)OC4=O"                                                                                                                         
YJZ SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccnc(c3)OC)C(=O)O)N4CC5(CC(C5)CN)OC4=O"                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           YJZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[2-(aminomethyl)-6-oxidanylidene-5-oxa-7-azaspiro[3.4]octan-7-yl]ethyl]-3-(2-methoxypyridin-4-yl)-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YJZ "Create component" 2023-06-19 PDBE 
YJZ "Initial release"  2024-07-10 RCSB 
# 
