data_Y8Z
# 
_chem_comp.id                                    Y8Z 
_chem_comp.name                                  "N-[(1R,3R)-3-{(2S)-2-benzyl-4-[2-(methylamino)-2-oxoethyl]-3-oxopiperazine-1-carbonyl}cyclopentyl]-4-chloro-3-(trifluoromethyl)benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H30 Cl F3 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        579.010 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y8Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G5P 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y8Z C10  C1  C  0 1 N N N N N N -14.724 10.514 47.329 -3.946  0.703  1.462  C10  Y8Z 1  
Y8Z C11  C2  C  0 1 N N N N N N -14.007 10.230 48.683 -5.361  1.228  1.212  C11  Y8Z 2  
Y8Z C13  C3  C  0 1 N N N N N N -13.266 12.679 48.460 -5.767  -0.911 0.043  C13  Y8Z 3  
Y8Z C15  C4  C  0 1 N N N N N N -14.691 13.509 46.545 -3.944  -2.398 0.827  C15  Y8Z 4  
Y8Z C16  C5  C  0 1 Y N N N N N -14.776 13.714 45.049 -2.511  -2.800 0.594  C16  Y8Z 5  
Y8Z C17  C6  C  0 1 Y N N N N N -15.620 12.905 44.238 -1.499  -2.207 1.325  C17  Y8Z 6  
Y8Z C18  C7  C  0 1 Y N N N N N -14.856 14.131 42.265 0.119   -3.538 0.166  C18  Y8Z 7  
Y8Z C19  C8  C  0 1 Y N N N N N -14.042 14.922 43.072 -0.894  -4.135 -0.562 C19  Y8Z 8  
Y8Z C20  C9  C  0 1 Y N N N N N -15.668 13.100 42.841 -0.184  -2.576 1.111  C20  Y8Z 9  
Y8Z C21  C10 C  0 1 Y N N N N N -13.953 14.709 44.448 -2.209  -3.766 -0.348 C21  Y8Z 10 
Y8Z C23  C11 C  0 1 N N N N N N -13.225 11.481 50.727 -7.662  0.329  0.827  C23  Y8Z 11 
Y8Z C24  C12 C  0 1 N N N N N N -13.886 12.685 51.384 -8.220  1.071  -0.361 C24  Y8Z 12 
Y8Z C27  C13 C  0 1 N N N N N N -15.830 14.364 51.257 -10.084 2.048  -1.589 C27  Y8Z 13 
Y8Z C28  C14 C  0 1 N N N N N N -11.139 7.706  42.420 3.080   1.790  -0.082 C28  Y8Z 14 
Y8Z C1   C15 C  0 1 N N N N N N -12.443 11.166 43.029 -0.489  1.791  -1.023 C1   Y8Z 15 
Y8Z C2   C16 C  0 1 N N R N N N -11.338 10.159 42.585 0.696   2.286  -0.174 C2   Y8Z 16 
Y8Z C3   C17 C  0 1 N N N N N N -10.118 10.658 43.347 0.202   2.333  1.287  C3   Y8Z 17 
Y8Z C4   C18 C  0 1 N N N N N N -10.625 10.874 44.737 -0.975  1.327  1.322  C4   Y8Z 18 
Y8Z C5   C19 C  0 1 N N S N N N -12.110 11.378 44.513 -1.661  1.555  -0.048 C5   Y8Z 19 
Y8Z C6   C20 C  0 1 N N N N N N -13.059 10.590 45.411 -2.447  0.335  -0.454 C6   Y8Z 20 
Y8Z O7   O1  O  0 1 N N N N N N -13.249 9.415  45.229 -2.115  -0.302 -1.431 O7   Y8Z 21 
Y8Z N8   N1  N  0 1 N N N N N N -13.744 11.225 46.473 -3.517  -0.049 0.269  N8   Y8Z 22 
Y8Z N9   N2  N  0 1 N N N N N N -11.659 8.795  43.032 1.822   1.356  -0.293 N9   Y8Z 23 
Y8Z N12  N3  N  0 1 N N N N N N -13.401 11.489 49.251 -6.213  0.178  0.671  N12  Y8Z 24 
Y8Z C14  C21 C  0 1 N N S N N N -13.485 12.594 46.916 -4.305  -1.234 -0.099 C14  Y8Z 25 
Y8Z O22  O2  O  0 1 N N N N N N -12.935 13.801 48.955 -6.578  -1.677 -0.433 O22  Y8Z 26 
Y8Z N25  N4  N  0 1 N N N N N N -15.083 13.164 50.788 -9.542  1.327  -0.435 N25  Y8Z 27 
Y8Z O26  O3  O  0 1 N N N N N N -13.353 13.220 52.365 -7.481  1.437  -1.249 O26  Y8Z 28 
Y8Z C29  C22 C  0 1 Y N N N N N -11.573 6.390  42.991 4.215   0.852  -0.203 C29  Y8Z 29 
Y8Z C30  C23 C  0 1 Y N N N N N -12.674 6.311  43.906 3.988   -0.484 -0.535 C30  Y8Z 30 
Y8Z C31  C24 C  0 1 Y N N N N N -12.283 3.905  43.940 6.344   -0.905 -0.429 C31  Y8Z 31 
Y8Z C32  C25 C  0 1 Y N N N N N -11.202 4.035  43.018 6.576   0.421  -0.105 C32  Y8Z 32 
Y8Z C33  C26 C  0 1 Y N N N N N -13.011 5.000  44.362 5.052   -1.355 -0.647 C33  Y8Z 33 
Y8Z C34  C27 C  0 1 Y N N N N N -10.897 5.288  42.560 5.521   1.301  0.010  C34  Y8Z 34 
Y8Z O35  O4  O  0 1 N N N N N N -10.349 7.789  41.449 3.280   2.954  0.208  O35  Y8Z 35 
Y8Z C36  C28 C  0 1 N N N N N N -10.441 2.802  42.568 7.985   0.902  0.131  C36  Y8Z 36 
Y8Z F37  F1  F  0 1 N N N N N N -9.640  2.283  43.487 7.966   2.266  0.442  F37  Y8Z 37 
Y8Z F38  F2  F  0 1 N N N N N N -11.242 1.765  42.211 8.549   0.189  1.194  F38  Y8Z 38 
Y8Z F39  F3  F  0 1 N N N N N N -9.689  2.968  41.474 8.747   0.698  -1.024 F39  Y8Z 39 
Y8Z CL40 CL1 CL 0 0 N N N N N N -12.715 2.321  44.606 7.678   -2.007 -0.572 CL40 Y8Z 40 
Y8Z H50  H1  H  0 1 N N N N N N -15.611 11.143 47.494 -3.268  1.539  1.632  H50  Y8Z 41 
Y8Z H51  H2  H  0 1 N N N N N N -15.028 9.569  46.855 -3.945  0.045  2.331  H51  Y8Z 42 
Y8Z H52  H3  H  0 1 N N N N N N -14.739 9.828  49.400 -5.783  1.583  2.152  H52  Y8Z 43 
Y8Z H53  H4  H  0 1 N N N N N N -13.210 9.490  48.519 -5.317  2.055  0.504  H53  Y8Z 44 
Y8Z H56  H5  H  0 1 N N N N N N -15.621 13.039 46.897 -4.598  -3.244 0.618  H56  Y8Z 45 
Y8Z H55  H6  H  0 1 N N N N N N -14.566 14.486 47.035 -4.071  -2.088 1.865  H55  Y8Z 46 
Y8Z H57  H7  H  0 1 N N N N N N -16.227 12.137 44.694 -1.735  -1.455 2.063  H57  Y8Z 47 
Y8Z H58  H8  H  0 1 N N N N N N -14.875 14.296 41.198 1.146   -3.826 -0.002 H58  Y8Z 48 
Y8Z H59  H9  H  0 1 N N N N N N -13.467 15.718 42.623 -0.657  -4.886 -1.300 H59  Y8Z 49 
Y8Z H60  H10 H  0 1 N N N N N N -16.303 12.486 42.220 0.607   -2.112 1.681  H60  Y8Z 50 
Y8Z H61  H11 H  0 1 N N N N N N -13.270 15.290 45.049 -3.000  -4.233 -0.916 H61  Y8Z 51 
Y8Z H62  H12 H  0 1 N N N N N N -13.674 10.563 51.134 -7.873  0.890  1.737  H62  Y8Z 52 
Y8Z H63  H13 H  0 1 N N N N N N -12.149 11.496 50.957 -8.125  -0.655 0.891  H63  Y8Z 53 
Y8Z H65  H14 H  0 1 N N N N N N -16.717 14.515 50.624 -9.621  3.032  -1.653 H65  Y8Z 54 
Y8Z H66  H15 H  0 1 N N N N N N -16.145 14.215 52.300 -9.873  1.487  -2.499 H66  Y8Z 55 
Y8Z H67  H16 H  0 1 N N N N N N -15.180 15.249 51.193 -11.162 2.160  -1.473 H67  Y8Z 56 
Y8Z H42  H17 H  0 1 N N N N N N -12.374 12.108 42.466 -0.762  2.547  -1.759 H42  Y8Z 57 
Y8Z H41  H18 H  0 1 N N N N N N -13.448 10.737 42.903 -0.226  0.859  -1.523 H41  Y8Z 58 
Y8Z H43  H19 H  0 1 N N N N N N -11.178 10.211 41.498 0.998   3.282  -0.498 H43  Y8Z 59 
Y8Z H45  H20 H  0 1 N N N N N N -9.315  9.906  43.336 0.993   2.018  1.967  H45  Y8Z 60 
Y8Z H44  H21 H  0 1 N N N N N N -9.745  11.599 42.916 -0.144  3.335  1.541  H44  Y8Z 61 
Y8Z H47  H22 H  0 1 N N N N N N -10.610 9.936  45.311 -0.608  0.304  1.405  H47  Y8Z 62 
Y8Z H46  H23 H  0 1 N N N N N N -10.026 11.634 45.261 -1.658  1.561  2.139  H46  Y8Z 63 
Y8Z H48  H24 H  0 1 N N N N N N -12.167 12.449 44.757 -2.308  2.431  -0.010 H48  Y8Z 64 
Y8Z H49  H25 H  0 1 N N N N N N -12.277 8.669  43.808 1.661   0.428  -0.525 H49  Y8Z 65 
Y8Z H54  H26 H  0 1 N N N N N N -12.586 12.983 46.415 -4.091  -1.508 -1.132 H54  Y8Z 66 
Y8Z H64  H27 H  0 1 N N N N N N -15.448 12.663 50.003 -10.133 1.034  0.276  H64  Y8Z 67 
Y8Z H68  H28 H  0 1 N N N N N N -13.215 7.188  44.230 2.981   -0.836 -0.705 H68  Y8Z 68 
Y8Z H69  H29 H  0 1 N N N N N N -13.840 4.864  45.041 4.877   -2.389 -0.904 H69  Y8Z 69 
Y8Z H70  H30 H  0 1 N N N N N N -10.101 5.406  41.839 5.703   2.335  0.263  H70  Y8Z 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y8Z C1  C2   SING N N 1  
Y8Z C1  C5   SING N N 2  
Y8Z C2  C3   SING N N 3  
Y8Z C2  N9   SING N N 4  
Y8Z C3  C4   SING N N 5  
Y8Z C4  C5   SING N N 6  
Y8Z C5  C6   SING N N 7  
Y8Z C6  O7   DOUB N N 8  
Y8Z C6  N8   SING N N 9  
Y8Z N8  C10  SING N N 10 
Y8Z N8  C14  SING N N 11 
Y8Z N9  C28  SING N N 12 
Y8Z C10 C11  SING N N 13 
Y8Z C11 N12  SING N N 14 
Y8Z N12 C13  SING N N 15 
Y8Z N12 C23  SING N N 16 
Y8Z C13 C14  SING N N 17 
Y8Z C13 O22  DOUB N N 18 
Y8Z C14 C15  SING N N 19 
Y8Z C15 C16  SING N N 20 
Y8Z C16 C17  DOUB Y N 21 
Y8Z C16 C21  SING Y N 22 
Y8Z C17 C20  SING Y N 23 
Y8Z C18 C19  SING Y N 24 
Y8Z C18 C20  DOUB Y N 25 
Y8Z C19 C21  DOUB Y N 26 
Y8Z C23 C24  SING N N 27 
Y8Z C24 N25  SING N N 28 
Y8Z C24 O26  DOUB N N 29 
Y8Z N25 C27  SING N N 30 
Y8Z C28 C29  SING N N 31 
Y8Z C28 O35  DOUB N N 32 
Y8Z C29 C30  DOUB Y N 33 
Y8Z C29 C34  SING Y N 34 
Y8Z C30 C33  SING Y N 35 
Y8Z C31 C32  SING Y N 36 
Y8Z C31 C33  DOUB Y N 37 
Y8Z C31 CL40 SING N N 38 
Y8Z C32 C34  DOUB Y N 39 
Y8Z C32 C36  SING N N 40 
Y8Z C36 F37  SING N N 41 
Y8Z C36 F38  SING N N 42 
Y8Z C36 F39  SING N N 43 
Y8Z C10 H50  SING N N 44 
Y8Z C10 H51  SING N N 45 
Y8Z C11 H52  SING N N 46 
Y8Z C11 H53  SING N N 47 
Y8Z C15 H56  SING N N 48 
Y8Z C15 H55  SING N N 49 
Y8Z C17 H57  SING N N 50 
Y8Z C18 H58  SING N N 51 
Y8Z C19 H59  SING N N 52 
Y8Z C20 H60  SING N N 53 
Y8Z C21 H61  SING N N 54 
Y8Z C23 H62  SING N N 55 
Y8Z C23 H63  SING N N 56 
Y8Z C27 H65  SING N N 57 
Y8Z C27 H66  SING N N 58 
Y8Z C27 H67  SING N N 59 
Y8Z C1  H42  SING N N 60 
Y8Z C1  H41  SING N N 61 
Y8Z C2  H43  SING N N 62 
Y8Z C3  H45  SING N N 63 
Y8Z C3  H44  SING N N 64 
Y8Z C4  H47  SING N N 65 
Y8Z C4  H46  SING N N 66 
Y8Z C5  H48  SING N N 67 
Y8Z N9  H49  SING N N 68 
Y8Z C14 H54  SING N N 69 
Y8Z N25 H64  SING N N 70 
Y8Z C30 H68  SING N N 71 
Y8Z C33 H69  SING N N 72 
Y8Z C34 H70  SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y8Z SMILES           ACDLabs              12.01 "O=C(C1CCC(NC(=O)c2ccc(Cl)c(c2)C(F)(F)F)C1)N1CCN(CC(=O)NC)C(=O)C1Cc1ccccc1"                                                                                                                                                           
Y8Z InChI            InChI                1.06  "InChI=1S/C28H30ClF3N4O4/c1-33-24(37)16-35-11-12-36(23(27(35)40)13-17-5-3-2-4-6-17)26(39)19-7-9-20(14-19)34-25(38)18-8-10-22(29)21(15-18)28(30,31)32/h2-6,8,10,15,19-20,23H,7,9,11-14,16H2,1H3,(H,33,37)(H,34,38)/t19-,20-,23?/m1/s1" 
Y8Z InChIKey         InChI                1.06  VYTGFXCOUVGDEC-VJOPYQGCSA-N                                                                                                                                                                                                           
Y8Z SMILES_CANONICAL CACTVS               3.385 "CNC(=O)CN1CCN([C@@H](Cc2ccccc2)C1=O)C(=O)[C@H]3CC[C@H](C3)NC(=O)c4ccc(Cl)c(c4)C(F)(F)F"                                                                                                                                              
Y8Z SMILES           CACTVS               3.385 "CNC(=O)CN1CCN([CH](Cc2ccccc2)C1=O)C(=O)[CH]3CC[CH](C3)NC(=O)c4ccc(Cl)c(c4)C(F)(F)F"                                                                                                                                                  
Y8Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)CN1CCN([C@H](C1=O)Cc2ccccc2)C(=O)[C@H]3CC[C@H](C3)NC(=O)c4ccc(c(c4)C(F)(F)F)Cl"                                                                                                                                               
Y8Z SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)CN1CCN(C(C1=O)Cc2ccccc2)C(=O)C3CCC(C3)NC(=O)c4ccc(c(c4)C(F)(F)F)Cl"                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y8Z "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(1R,3R)-3-{(2S)-2-benzyl-4-[2-(methylamino)-2-oxoethyl]-3-oxopiperazine-1-carbonyl}cyclopentyl]-4-chloro-3-(trifluoromethyl)benzamide"                                              
Y8Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-chloranyl-~{N}-[(1~{R},3~{S})-3-[(2~{S})-4-[2-(methylamino)-2-oxidanylidene-ethyl]-3-oxidanylidene-2-(phenylmethyl)piperazin-1-yl]carbonylcyclopentyl]-3-(trifluoromethyl)benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y8Z "Create component" 2023-06-12 RCSB 
Y8Z "Initial release"  2024-12-18 RCSB 
# 
