data_XYZ
#

_chem_comp.id                                   XYZ
_chem_comp.name                                 beta-D-xylofuranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "beta-D-xylose; D-xylose; xylose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-06-10
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XYZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1W0Q
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  XYZ  beta-D-xylose  PDB  ?  
2  XYZ  D-xylose       PDB  ?  
3  XYZ  xylose         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XYZ  C4   C4   C  0  1  N  N  R  11.700  -18.178  4.800   0.854  -0.125   0.500  C4   XYZ   1  
XYZ  O4   O    O  0  1  N  N  N  12.486  -18.199  3.597   0.278   1.114   0.034  O4   XYZ   2  
XYZ  C1   C1   C  0  1  N  N  R  12.751  -19.561  3.214  -1.148   0.991   0.169  C1   XYZ   3  
XYZ  C2   C2   C  0  1  N  N  R  12.128  -20.456  4.317  -1.488  -0.510   0.085  C2   XYZ   4  
XYZ  O2   O2   O  0  1  N  N  N  10.826  -20.912  3.933  -2.148  -0.941   1.277  O2   XYZ   5  
XYZ  C3   C3   C  0  1  N  N  R  12.009  -19.510  5.505  -0.110  -1.206  -0.052  C3   XYZ   6  
XYZ  O3   O3   O  0  1  N  N  N  13.271  -19.465  6.169   0.182  -1.495  -1.421  O3   XYZ   7  
XYZ  C5   C5   C  0  1  N  N  N  12.007  -16.896  5.589   2.260  -0.314  -0.073  C5   XYZ   8  
XYZ  O5   O5   O  0  1  N  N  N  11.223  -16.840  6.781   3.142   0.653   0.501  O5   XYZ   9  
XYZ  O1   O1   O  0  1  N  Y  N  13.845  -19.749  3.106  -1.799   1.699  -0.888  O1   XYZ  10  
XYZ  H4   H4   H  0  1  N  N  N  10.612  -18.125  4.645   0.878  -0.152   1.589  H4   XYZ  11  
XYZ  H1   H1   H  0  1  N  N  N  12.310  -19.785  2.231  -1.465   1.389   1.133  H1   XYZ  12  
XYZ  H2   H2   H  0  1  N  N  N  12.727  -21.356  4.521  -2.108  -0.713  -0.788  H2   XYZ  13  
XYZ  HO2  HO2  H  0  1  N  Y  N  10.284  -21.013  4.707  -2.969  -0.434   1.340  HO2  XYZ  14  
XYZ  H3   H3   H  0  1  N  N  N  11.261  -19.781  6.264  -0.070  -2.113   0.551  H3   XYZ  15  
XYZ  HO3  HO3  H  0  1  N  Y  N  13.968  -19.455  5.524  -0.506  -2.098  -1.732  HO3  XYZ  16  
XYZ  H51  H51  H  0  1  N  N  N  11.763  -16.026  4.962   2.233  -0.183  -1.155  H51  XYZ  17  
XYZ  H52  H52  H  0  1  N  N  N  13.073  -16.886  5.859   2.617  -1.316   0.163  H52  XYZ  18  
XYZ  HO5  H5   H  0  1  N  Y  N  11.797  -16.828  7.538   4.015   0.500   0.114  HO5  XYZ  19  
XYZ  HO1  HO1  H  0  1  N  Y  N  14.068  -19.802  2.184  -1.548   2.628  -0.798  HO1  XYZ  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XYZ  C4  O4   SING  N  N   1  
XYZ  C4  C3   SING  N  N   2  
XYZ  C4  C5   SING  N  N   3  
XYZ  C4  H4   SING  N  N   4  
XYZ  O4  C1   SING  N  N   5  
XYZ  C1  C2   SING  N  N   6  
XYZ  C1  O1   SING  N  N   7  
XYZ  C1  H1   SING  N  N   8  
XYZ  C2  O2   SING  N  N   9  
XYZ  C2  C3   SING  N  N  10  
XYZ  C2  H2   SING  N  N  11  
XYZ  O2  HO2  SING  N  N  12  
XYZ  C3  O3   SING  N  N  13  
XYZ  C3  H3   SING  N  N  14  
XYZ  O3  HO3  SING  N  N  15  
XYZ  C5  O5   SING  N  N  16  
XYZ  C5  H51  SING  N  N  17  
XYZ  C5  H52  SING  N  N  18  
XYZ  O5  HO5  SING  N  N  19  
XYZ  O1  HO1  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XYZ  SMILES            ACDLabs               10.04  "OC1C(OC(O)C1O)CO"  
XYZ  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@@H](O)[C@H](O)[C@H]1O"  
XYZ  SMILES            CACTVS                3.341  "OC[CH]1O[CH](O)[CH](O)[CH]1O"  
XYZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@@H]([C@H]([C@@H](O1)O)O)O)O"  
XYZ  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(O1)O)O)O)O"  
XYZ  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3+,4-,5-/m1/s1"  
XYZ  InChIKey          InChI                 1.03   HMFHBZSHGGEWLO-KKQCNMDGSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XYZ  "SYSTEMATIC NAME"                      ACDLabs               10.04  beta-D-xylofuranose  
XYZ  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2R,3R,4R,5R)-5-(hydroxymethyl)oxolane-2,3,4-triol"  
XYZ  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DXylfb  
XYZ  "COMMON NAME"                          GMML                  1.0    b-D-xylofuranose  
XYZ  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-Xylf  
XYZ  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Xyl  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
XYZ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
XYZ  "CARBOHYDRATE RING"                    furanose  PDB  ?  
XYZ  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
XYZ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XYZ  "Create component"          2004-06-10  RCSB  
XYZ  "Modify descriptor"         2011-06-04  RCSB  
XYZ  "Other modification"        2019-08-12  RCSB  
XYZ  "Other modification"        2019-12-19  RCSB  
XYZ  "Other modification"        2020-07-03  RCSB  
XYZ  "Modify name"               2020-07-17  RCSB  
XYZ  "Modify synonyms"           2020-07-17  RCSB  
XYZ  "Modify atom id"            2020-07-17  RCSB  
XYZ  "Modify component atom id"  2020-07-17  RCSB  
##
