data_XJZ
# 
_chem_comp.id                                    XJZ 
_chem_comp.name                                  "3-{2-[3-({2,4-diamino-6-[4-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H23 F3 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-23 
_chem_comp.pdbx_modified_date                    2023-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        476.448 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XJZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F83 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XJZ C1  C1  C 0 1 Y N N N N N -6.684  3.732  9.226  -5.123 3.182  0.254  C1  XJZ 1  
XJZ C2  C2  C 0 1 Y N N N N N -6.026  2.789  11.195 -2.929 3.637  -0.303 C2  XJZ 2  
XJZ C3  C3  C 0 1 Y N N N N N -6.266  4.034  11.863 -2.671 2.264  -0.364 C3  XJZ 3  
XJZ C4  C4  C 0 1 N N N N N N -6.838  3.499  14.167 -0.527 1.582  0.407  C4  XJZ 4  
XJZ C5  C5  C 0 1 N N N N N N -6.391  3.865  15.563 0.806  1.064  -0.137 C5  XJZ 5  
XJZ C6  C6  C 0 1 N N N N N N -6.674  5.310  15.906 1.775  0.831  1.025  C6  XJZ 6  
XJZ C7  C7  C 0 1 Y N N N N N -8.580  6.789  16.117 3.997  0.088  1.425  C7  XJZ 7  
XJZ C20 C8  C 0 1 Y N N N N N -7.212  9.087  12.534 -3.091 -2.820 -0.246 C20 XJZ 8  
XJZ C21 C9  C 0 1 N N N N N N -7.319  10.491 13.036 -2.869 -4.310 -0.299 C21 XJZ 9  
XJZ C22 C10 C 0 1 Y N N N N N -6.355  8.792  11.490 -3.966 -2.287 0.684  C22 XJZ 10 
XJZ C23 C11 C 0 1 Y N N N N N -6.229  7.487  11.061 -4.173 -0.924 0.737  C23 XJZ 11 
XJZ N2  N1  N 0 1 Y N N N N N -6.263  2.642  9.882  -4.154 4.051  0.006  N2  XJZ 12 
XJZ O1  O1  O 0 1 N N N N N N -6.005  4.194  13.214 -1.431 1.800  -0.678 O1  XJZ 13 
XJZ O4  O2  O 0 1 N N N N N N -14.393 4.767  16.044 6.585  1.506  -3.358 O4  XJZ 14 
XJZ C10 C12 C 0 1 Y N N N N N -9.634  9.322  16.512 5.990  -0.430 3.272  C10 XJZ 15 
XJZ C11 C13 C 0 1 Y N N N N N -10.465 8.253  16.209 6.227  -0.636 1.926  C11 XJZ 16 
XJZ C12 C14 C 0 1 Y N N N N N -9.973  6.960  16.010 5.233  -0.378 1.001  C12 XJZ 17 
XJZ C13 C15 C 0 1 N N N N N N -10.882 5.791  15.652 5.491  -0.604 -0.466 C13 XJZ 18 
XJZ C14 C16 C 0 1 N N N N N N -12.338 5.959  16.044 5.929  0.711  -1.115 C14 XJZ 19 
XJZ C15 C17 C 0 1 N N N N N N -13.244 4.828  15.562 6.187  0.485  -2.582 C15 XJZ 20 
XJZ C16 C18 C 0 1 Y N N N N N -6.708  5.096  11.102 -3.719 1.382  -0.097 C16 XJZ 21 
XJZ C17 C19 C 0 1 Y N N N N N -6.979  6.462  11.628 -3.500 -0.084 -0.149 C17 XJZ 22 
XJZ C18 C20 C 0 1 Y N N N N N -7.764  6.757  12.736 -2.620 -0.627 -1.084 C18 XJZ 23 
XJZ C19 C21 C 0 1 Y N N N N N -7.910  8.068  13.165 -2.416 -1.991 -1.124 C19 XJZ 24 
XJZ C8  C22 C 0 1 Y N N N N N -7.746  7.854  16.428 3.763  0.294  2.777  C8  XJZ 25 
XJZ C9  C23 C 0 1 Y N N N N N -8.277  9.117  16.616 4.759  0.035  3.697  C9  XJZ 26 
XJZ F1  F1  F 0 1 N N N N N N -6.623  10.628 14.159 -2.553 -4.688 -1.608 F1  XJZ 27 
XJZ F2  F2  F 0 1 N N N N N N -8.541  10.855 13.342 -1.814 -4.654 0.553  F2  XJZ 28 
XJZ F3  F3  F 0 1 N N N N N N -6.841  11.434 12.196 -4.033 -4.970 0.110  F3  XJZ 29 
XJZ N1  N2  N 0 1 N N N N N N -6.937  3.596  7.907  -6.388 3.657  0.567  N1  XJZ 30 
XJZ N3  N3  N 0 1 N N N N N N -5.512  1.719  11.858 -1.920 4.555  -0.560 N3  XJZ 31 
XJZ N4  N4  N 0 1 Y N N N N N -6.903  4.945  9.780  -4.920 1.877  0.206  N4  XJZ 32 
XJZ O2  O3  O 0 1 N N N N N N -8.106  5.525  15.898 3.020  0.348  0.517  O2  XJZ 33 
XJZ O3  O4  O 0 1 N N N N N N -12.817 4.013  14.718 6.036  -0.614 -3.060 O3  XJZ 34 
XJZ H1  H1  H 0 1 N N N N N N -7.888  3.795  14.025 -0.950 0.847  1.091  H1  XJZ 35 
XJZ H2  H2  H 0 1 N N N N N N -6.740  2.413  14.020 -0.363 2.520  0.938  H2  XJZ 36 
XJZ H3  H3  H 0 1 N N N N N N -6.920  3.222  16.282 0.643  0.127  -0.667 H3  XJZ 37 
XJZ H4  H4  H 0 1 N N N N N N -5.308  3.690  15.643 1.230  1.800  -0.820 H4  XJZ 38 
XJZ H5  H5  H 0 1 N N N N N N -6.273  5.537  16.905 1.938  1.769  1.556  H5  XJZ 39 
XJZ H6  H6  H 0 1 N N N N N N -6.199  5.966  15.162 1.351  0.096  1.709  H6  XJZ 40 
XJZ H7  H7  H 0 1 N N N N N N -5.788  9.578  11.013 -4.487 -2.938 1.370  H7  XJZ 41 
XJZ H8  H8  H 0 1 N N N N N N -5.533  7.256  10.268 -4.856 -0.508 1.463  H8  XJZ 42 
XJZ H9  H9  H 0 1 N N N N N N -14.855 4.026  15.669 6.738  1.313  -4.293 H9  XJZ 43 
XJZ H10 H10 H 0 1 N N N N N N -10.049 10.307 16.665 6.768  -0.632 3.993  H10 XJZ 44 
XJZ H11 H11 H 0 1 N N N N N N -11.528 8.426  16.124 7.189  -0.999 1.597  H11 XJZ 45 
XJZ H12 H12 H 0 1 N N N N N N -10.838 5.647  14.562 6.278  -1.348 -0.586 H12 XJZ 46 
XJZ H13 H13 H 0 1 N N N N N N -10.496 4.893  16.156 4.579  -0.959 -0.945 H13 XJZ 47 
XJZ H14 H14 H 0 1 N N N N N N -12.705 6.903  15.615 5.142  1.455  -0.994 H14 XJZ 48 
XJZ H15 H15 H 0 1 N N N N N N -12.398 6.007  17.141 6.841  1.066  -0.636 H15 XJZ 49 
XJZ H16 H16 H 0 1 N N N N N N -8.264  5.960  13.267 -2.096 0.019  -1.773 H16 XJZ 50 
XJZ H17 H17 H 0 1 N N N N N N -8.568  8.295  13.991 -1.731 -2.413 -1.845 H17 XJZ 51 
XJZ H18 H18 H 0 1 N N N N N N -6.682  7.696  16.523 2.801  0.658  3.109  H18 XJZ 52 
XJZ H19 H19 H 0 1 N N N N N N -7.624  9.946  16.845 4.577  0.195  4.750  H19 XJZ 53 
XJZ H20 H20 H 0 1 N N N N N N -7.263  4.466  7.538  -7.109 3.033  0.747  H20 XJZ 54 
XJZ H21 H21 H 0 1 N N N N N N -6.099  3.327  7.433  -6.552 4.612  0.606  H21 XJZ 55 
XJZ H22 H22 H 0 1 N N N N N N -5.390  0.958  11.220 -1.029 4.246  -0.785 H22 XJZ 56 
XJZ H23 H23 H 0 1 N N N N N N -4.628  1.966  12.255 -2.107 5.506  -0.515 H23 XJZ 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XJZ N1  C1  SING N N 1  
XJZ C1  N4  DOUB Y N 2  
XJZ C1  N2  SING Y N 3  
XJZ N4  C16 SING Y N 4  
XJZ N2  C2  DOUB Y N 5  
XJZ C23 C22 DOUB Y N 6  
XJZ C23 C17 SING Y N 7  
XJZ C16 C17 SING N N 8  
XJZ C16 C3  DOUB Y N 9  
XJZ C2  N3  SING N N 10 
XJZ C2  C3  SING Y N 11 
XJZ C22 C20 SING Y N 12 
XJZ C17 C18 DOUB Y N 13 
XJZ C3  O1  SING N N 14 
XJZ F3  C21 SING N N 15 
XJZ C20 C21 SING N N 16 
XJZ C20 C19 DOUB Y N 17 
XJZ C18 C19 SING Y N 18 
XJZ C21 F2  SING N N 19 
XJZ C21 F1  SING N N 20 
XJZ O1  C4  SING N N 21 
XJZ C4  C5  SING N N 22 
XJZ O3  C15 DOUB N N 23 
XJZ C15 C14 SING N N 24 
XJZ C15 O4  SING N N 25 
XJZ C5  C6  SING N N 26 
XJZ C13 C12 SING N N 27 
XJZ C13 C14 SING N N 28 
XJZ O2  C6  SING N N 29 
XJZ O2  C7  SING N N 30 
XJZ C12 C7  DOUB Y N 31 
XJZ C12 C11 SING Y N 32 
XJZ C7  C8  SING Y N 33 
XJZ C11 C10 DOUB Y N 34 
XJZ C8  C9  DOUB Y N 35 
XJZ C10 C9  SING Y N 36 
XJZ C4  H1  SING N N 37 
XJZ C4  H2  SING N N 38 
XJZ C5  H3  SING N N 39 
XJZ C5  H4  SING N N 40 
XJZ C6  H5  SING N N 41 
XJZ C6  H6  SING N N 42 
XJZ C22 H7  SING N N 43 
XJZ C23 H8  SING N N 44 
XJZ O4  H9  SING N N 45 
XJZ C10 H10 SING N N 46 
XJZ C11 H11 SING N N 47 
XJZ C13 H12 SING N N 48 
XJZ C13 H13 SING N N 49 
XJZ C14 H14 SING N N 50 
XJZ C14 H15 SING N N 51 
XJZ C18 H16 SING N N 52 
XJZ C19 H17 SING N N 53 
XJZ C8  H18 SING N N 54 
XJZ C9  H19 SING N N 55 
XJZ N1  H20 SING N N 56 
XJZ N1  H21 SING N N 57 
XJZ N3  H22 SING N N 58 
XJZ N3  H23 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XJZ SMILES           ACDLabs              12.01 "Nc1nc(c2ccc(cc2)C(F)(F)F)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1"                                                                                                                           
XJZ InChI            InChI                1.06  "InChI=1S/C23H23F3N4O4/c24-23(25,26)16-9-6-15(7-10-16)19-20(21(27)30-22(28)29-19)34-13-3-12-33-17-5-2-1-4-14(17)8-11-18(31)32/h1-2,4-7,9-10H,3,8,11-13H2,(H,31,32)(H4,27,28,29,30)" 
XJZ InChIKey         InChI                1.06  OSOFZLUZBIQDGQ-UHFFFAOYSA-N                                                                                                                                                         
XJZ SMILES_CANONICAL CACTVS               3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3ccc(cc3)C(F)(F)F"                                                                                                                           
XJZ SMILES           CACTVS               3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3ccc(cc3)C(F)(F)F"                                                                                                                           
XJZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3ccc(cc3)C(F)(F)F"                                                                                                                         
XJZ SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3ccc(cc3)C(F)(F)F"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XJZ "SYSTEMATIC NAME" ACDLabs              12.01 "3-{2-[3-({2,4-diamino-6-[4-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid"   
XJZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-[4-(trifluoromethyl)phenyl]pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XJZ "Create component" 2022-11-23 RCSB 
XJZ "Initial release"  2023-12-13 RCSB 
# 
