data_X9Z
# 
_chem_comp.id                                    X9Z 
_chem_comp.name                                  "(1R,2S,5S)-N-[(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-(2-oxopyrrolidin-1-yl)butan-2-yl]-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H40 F3 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        587.632 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X9Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F2C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X9Z N1  N1  N 0 1 N N N N N N -19.496 15.762 -27.097 -0.890 0.044  -0.655 N1  X9Z 1  
X9Z N3  N2  N 0 1 N N N N N N -17.960 13.409 -24.968 2.776  -0.289 -0.862 N3  X9Z 2  
X9Z C4  C1  C 0 1 N N S N N N -20.606 17.121 -25.517 -0.590 2.414  -0.506 C4  X9Z 3  
X9Z C5  C2  C 0 1 N N N N N N -19.420 17.913 -25.030 -0.891 2.500  -2.004 C5  X9Z 4  
X9Z C6  C3  C 0 1 N N N N N N -18.575 18.575 -26.096 -1.980 1.579  -2.558 C6  X9Z 5  
X9Z C7  C4  C 0 1 N N N N N N -19.591 18.742 -23.769 -0.795 3.877  -2.665 C7  X9Z 6  
X9Z C8  C5  C 0 1 N N N N N N -20.654 16.660 -26.952 -1.101 1.181  0.270  C8  X9Z 7  
X9Z C10 C6  C 0 1 N N S N N N -19.860 15.482 -29.486 -2.964 -1.164 -0.059 C10 X9Z 8  
X9Z C13 C7  C 0 1 N N N N N N -19.449 13.150 -30.542 -3.275 -3.560 -0.697 C13 X9Z 9  
X9Z C15 C8  C 0 1 N N N N N N -19.402 17.362 -30.960 -4.254 0.479  1.196  C15 X9Z 10 
X9Z C17 C9  C 0 1 N N S N N N -18.075 12.128 -24.254 3.858  -0.710 0.031  C17 X9Z 11 
X9Z C20 C10 C 0 1 N N N N N N -19.984 10.312 -20.149 4.770  1.624  2.186  C20 X9Z 12 
X9Z C21 C11 C 0 1 N N N N N N -21.303 11.090 -20.241 5.262  3.036  2.553  C21 X9Z 13 
X9Z C22 C12 C 0 1 N N N N N N -20.479 12.276 -20.768 4.724  3.473  1.179  C22 X9Z 14 
X9Z C24 C13 C 0 1 N N N N N N -18.722 10.303 -26.665 1.656  -3.150 -0.690 C24 X9Z 15 
X9Z C26 C14 C 0 1 N N N N N N -17.090 9.987  -28.389 0.898  -3.781 1.495  C26 X9Z 16 
X9Z C1  C15 C 0 1 N N N N N N -19.008 14.046 -25.495 1.545  -0.053 -0.365 C1  X9Z 17 
X9Z O1  O1  O 0 1 N N N N N N -20.110 13.546 -25.690 1.345  -0.146 0.828  O1  X9Z 18 
X9Z C2  C16 C 0 1 N N S N N N -18.805 15.497 -25.851 0.418  0.326  -1.291 C2  X9Z 19 
X9Z N2  N3  N 0 1 N N N N N N -19.006 16.226 -30.408 -3.635 0.134  0.049  N2  X9Z 20 
X9Z O2  O2  O 0 1 N N N N N N -20.442 17.946 -30.729 -4.256 -0.286 2.137  O2  X9Z 21 
X9Z C3  C17 C 0 1 N N R N N N -19.460 16.422 -24.839 0.412  1.850  -1.535 C3  X9Z 22 
X9Z O3  O3  O 0 1 N N N N N N -17.976 14.625 -28.279 -1.414 -1.838 -1.706 O3  X9Z 23 
X9Z N4  N4  N 0 1 N N N N N N -19.425 11.308 -21.063 4.878  2.058  0.779  N4  X9Z 24 
X9Z O4  O4  O 0 1 N N N N N N -18.793 13.521 -22.441 5.464  -0.504 -1.763 O4  X9Z 25 
X9Z N5  N5  N 0 1 N N N N N N -17.398 10.729 -26.217 2.685  -2.838 0.309  N5  X9Z 26 
X9Z O5  O5  O 0 1 N N N N N N -17.827 10.155 -22.024 5.106  2.058  -1.428 O5  X9Z 27 
X9Z O6  O6  O 0 1 N N N N N N -15.326 11.127 -27.107 2.937  -3.021 2.555  O6  X9Z 28 
X9Z C9  C18 C 0 1 N N N N N N -19.034 15.229 -28.229 -1.701 -1.012 -0.867 C9  X9Z 29 
X9Z C11 C19 C 0 1 N N N N N N -20.475 14.212 -30.121 -3.895 -2.162 -0.752 C11 X9Z 30 
X9Z C12 C20 C 0 1 N N N N N N -21.441 13.642 -29.083 -5.249 -2.176 -0.040 C12 X9Z 31 
X9Z C14 C21 C 0 1 N N N N N N -21.271 14.654 -31.356 -4.091 -1.748 -2.212 C14 X9Z 32 
X9Z C16 C22 C 0 1 N N N N N N -18.427 17.978 -31.965 -4.943 1.814  1.307  C16 X9Z 33 
X9Z C18 C23 C 0 1 N N R N N N -17.917 12.431 -22.744 5.174  -0.079 -0.430 C18 X9Z 34 
X9Z C19 C24 C 0 1 N N N N N N -18.387 11.226 -21.891 5.050  1.422  -0.396 C19 X9Z 35 
X9Z C23 C25 C 0 1 N N N N N N -17.101 11.093 -24.832 3.983  -2.234 -0.003 C23 X9Z 36 
X9Z C25 C26 C 0 1 N N N N N N -18.449 9.555  -27.950 0.693  -4.137 0.005  C25 X9Z 37 
X9Z C27 C27 C 0 1 N N N N N N -16.474 10.677 -27.187 2.284  -3.177 1.546  C27 X9Z 38 
X9Z F1  F1  F 0 1 N N N N N N -18.906 18.038 -33.222 -5.950 1.902  0.340  F1  X9Z 39 
X9Z F2  F2  F 0 1 N N N N N N -18.037 19.158 -31.500 -5.508 1.942  2.581  F2  X9Z 40 
X9Z F3  F3  F 0 1 N N N N N N -17.309 17.290 -32.021 -4.012 2.838  1.105  F3  X9Z 41 
X9Z H1  H1  H 0 1 N N N N N N -17.054 13.822 -25.063 2.944  -0.180 -1.811 H1  X9Z 42 
X9Z H2  H2  H 0 1 N N N N N N -21.555 17.217 -24.970 -0.386 3.327  0.054  H2  X9Z 43 
X9Z H3  H3  H 0 1 N N N N N N -17.746 19.120 -25.621 -2.940 1.841  -2.113 H3  X9Z 44 
X9Z H4  H4  H 0 1 N N N N N N -18.170 17.807 -26.772 -2.037 1.694  -3.640 H4  X9Z 45 
X9Z H5  H5  H 0 1 N N N N N N -19.195 19.279 -26.670 -1.737 0.544  -2.315 H5  X9Z 46 
X9Z H6  H6  H 0 1 N N N N N N -20.215 18.191 -23.049 -0.365 4.589  -1.960 H6  X9Z 47 
X9Z H7  H7  H 0 1 N N N N N N -18.605 18.939 -23.324 -0.161 3.812  -3.549 H7  X9Z 48 
X9Z H8  H8  H 0 1 N N N N N N -20.077 19.696 -24.021 -1.791 4.211  -2.956 H8  X9Z 49 
X9Z H9  H9  H 0 1 N N N N N N -20.569 17.516 -27.637 -2.160 1.291  0.502  H9  X9Z 50 
X9Z H10 H10 H 0 1 N N N N N N -21.591 16.120 -27.155 -0.523 1.041  1.183  H10 X9Z 51 
X9Z H11 H11 H 0 1 N N N N N N -20.698 16.134 -29.198 -2.717 -1.530 0.937  H11 X9Z 52 
X9Z H12 H12 H 0 1 N N N N N N -18.873 12.827 -29.662 -3.151 -3.862 0.343  H12 X9Z 53 
X9Z H13 H13 H 0 1 N N N N N N -19.973 12.285 -30.975 -3.930 -4.268 -1.204 H13 X9Z 54 
X9Z H14 H14 H 0 1 N N N N N N -18.766 13.577 -31.291 -2.303 -3.546 -1.190 H14 X9Z 55 
X9Z H15 H15 H 0 1 N N N N N N -19.094 11.741 -24.404 3.637  -0.386 1.048  H15 X9Z 56 
X9Z H16 H16 H 0 1 N N N N N N -20.023 9.289  -20.550 5.467  0.831  2.456  H16 X9Z 57 
X9Z H17 H17 H 0 1 N N N N N N -19.527 10.296 -19.149 3.748  1.418  2.505  H17 X9Z 58 
X9Z H18 H18 H 0 1 N N N N N N -21.800 11.268 -19.276 4.731  3.481  3.394  H18 X9Z 59 
X9Z H19 H19 H 0 1 N N N N N N -22.030 10.680 -20.958 6.346  3.112  2.646  H19 X9Z 60 
X9Z H20 H20 H 0 1 N N N N N N -20.216 13.028 -20.010 3.688  3.811  1.200  H20 X9Z 61 
X9Z H21 H21 H 0 1 N N N N N N -20.904 12.778 -21.650 5.383  4.157  0.646  H21 X9Z 62 
X9Z H22 H22 H 0 1 N N N N N N -19.371 11.172 -26.848 1.123  -2.243 -0.978 H22 X9Z 63 
X9Z H23 H23 H 0 1 N N N N N N -19.193 9.644  -25.921 2.109  -3.615 -1.566 H23 X9Z 64 
X9Z H24 H24 H 0 1 N N N N N N -16.486 9.116  -28.683 0.153  -3.055 1.820  H24 X9Z 65 
X9Z H25 H25 H 0 1 N N N N N N -17.164 10.685 -29.236 0.850  -4.679 2.112  H25 X9Z 66 
X9Z H26 H26 H 0 1 N N N N N N -17.732 15.724 -25.935 0.506  -0.212 -2.235 H26 X9Z 67 
X9Z H27 H27 H 0 1 N N N N N N -18.099 15.868 -30.628 -3.632 0.745  -0.704 H27 X9Z 68 
X9Z H28 H28 H 0 1 N N N N N N -19.620 16.036 -23.822 1.362  2.343  -1.741 H28 X9Z 69 
X9Z H29 H29 H 0 1 N N N N N N -18.723 13.737 -21.518 4.788  -0.259 -2.410 H29 X9Z 70 
X9Z H30 H30 H 0 1 N N N N N N -20.878 13.323 -28.194 -5.109 -2.471 1.000  H30 X9Z 71 
X9Z H31 H31 H 0 1 N N N N N N -22.170 14.415 -28.797 -5.690 -1.180 -0.079 H31 X9Z 72 
X9Z H32 H32 H 0 1 N N N N N N -21.971 12.778 -29.511 -5.911 -2.887 -0.533 H32 X9Z 73 
X9Z H33 H33 H 0 1 N N N N N N -22.009 15.415 -31.064 -4.724 -2.479 -2.715 H33 X9Z 74 
X9Z H34 H34 H 0 1 N N N N N N -20.583 15.078 -32.103 -4.565 -0.768 -2.251 H34 X9Z 75 
X9Z H35 H35 H 0 1 N N N N N N -21.791 13.786 -31.787 -3.122 -1.703 -2.710 H35 X9Z 76 
X9Z H36 H36 H 0 1 N N N N N N -16.869 12.672 -22.514 5.979  -0.393 0.235  H36 X9Z 77 
X9Z H37 H37 H 0 1 N N N N N N -17.150 10.184 -24.214 4.302  -2.551 -0.996 H37 X9Z 78 
X9Z H38 H38 H 0 1 N N N N N N -16.084 11.510 -24.791 4.719  -2.555 0.735  H38 X9Z 79 
X9Z H39 H39 H 0 1 N N N N N N -19.199 9.815  -28.712 -0.338 -3.958 -0.301 H39 X9Z 80 
X9Z H40 H40 H 0 1 N N N N N N -18.468 8.469  -27.773 0.983  -5.169 -0.193 H40 X9Z 81 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X9Z F1  C16 SING N N 1  
X9Z F3  C16 SING N N 2  
X9Z C16 F2  SING N N 3  
X9Z C16 C15 SING N N 4  
X9Z C14 C11 SING N N 5  
X9Z C15 O2  DOUB N N 6  
X9Z C15 N2  SING N N 7  
X9Z C13 C11 SING N N 8  
X9Z N2  C10 SING N N 9  
X9Z C11 C10 SING N N 10 
X9Z C11 C12 SING N N 11 
X9Z C10 C9  SING N N 12 
X9Z C26 C25 SING N N 13 
X9Z C26 C27 SING N N 14 
X9Z O3  C9  DOUB N N 15 
X9Z C9  N1  SING N N 16 
X9Z C25 C24 SING N N 17 
X9Z C27 O6  DOUB N N 18 
X9Z C27 N5  SING N N 19 
X9Z N1  C8  SING N N 20 
X9Z N1  C2  SING N N 21 
X9Z C8  C4  SING N N 22 
X9Z C24 N5  SING N N 23 
X9Z N5  C23 SING N N 24 
X9Z C6  C5  SING N N 25 
X9Z C2  C1  SING N N 26 
X9Z C2  C3  SING N N 27 
X9Z O1  C1  DOUB N N 28 
X9Z C4  C5  SING N N 29 
X9Z C4  C3  SING N N 30 
X9Z C1  N3  SING N N 31 
X9Z C5  C3  SING N N 32 
X9Z C5  C7  SING N N 33 
X9Z N3  C17 SING N N 34 
X9Z C23 C17 SING N N 35 
X9Z C17 C18 SING N N 36 
X9Z C18 O4  SING N N 37 
X9Z C18 C19 SING N N 38 
X9Z O5  C19 DOUB N N 39 
X9Z C19 N4  SING N N 40 
X9Z N4  C22 SING N N 41 
X9Z N4  C20 SING N N 42 
X9Z C22 C21 SING N N 43 
X9Z C21 C20 SING N N 44 
X9Z N3  H1  SING N N 45 
X9Z C4  H2  SING N N 46 
X9Z C6  H3  SING N N 47 
X9Z C6  H4  SING N N 48 
X9Z C6  H5  SING N N 49 
X9Z C7  H6  SING N N 50 
X9Z C7  H7  SING N N 51 
X9Z C7  H8  SING N N 52 
X9Z C8  H9  SING N N 53 
X9Z C8  H10 SING N N 54 
X9Z C10 H11 SING N N 55 
X9Z C13 H12 SING N N 56 
X9Z C13 H13 SING N N 57 
X9Z C13 H14 SING N N 58 
X9Z C17 H15 SING N N 59 
X9Z C20 H16 SING N N 60 
X9Z C20 H17 SING N N 61 
X9Z C21 H18 SING N N 62 
X9Z C21 H19 SING N N 63 
X9Z C22 H20 SING N N 64 
X9Z C22 H21 SING N N 65 
X9Z C24 H22 SING N N 66 
X9Z C24 H23 SING N N 67 
X9Z C26 H24 SING N N 68 
X9Z C26 H25 SING N N 69 
X9Z C2  H26 SING N N 70 
X9Z N2  H27 SING N N 71 
X9Z C3  H28 SING N N 72 
X9Z O4  H29 SING N N 73 
X9Z C12 H30 SING N N 74 
X9Z C12 H31 SING N N 75 
X9Z C12 H32 SING N N 76 
X9Z C14 H33 SING N N 77 
X9Z C14 H34 SING N N 78 
X9Z C14 H35 SING N N 79 
X9Z C18 H36 SING N N 80 
X9Z C23 H37 SING N N 81 
X9Z C23 H38 SING N N 82 
X9Z C25 H39 SING N N 83 
X9Z C25 H40 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X9Z SMILES           ACDLabs              12.01 "CC1(C)C2C(C(=O)NC(CN3CCCC3=O)C(O)C(=O)N3CCC3)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C"                                                                                                                                                   
X9Z InChI            InChI                1.06  "InChI=1S/C27H40F3N5O6/c1-25(2,3)20(32-24(41)27(28,29)30)23(40)35-12-14-17(26(14,4)5)18(35)21(38)31-15(13-34-9-6-8-16(34)36)19(37)22(39)33-10-7-11-33/h14-15,17-20,37H,6-13H2,1-5H3,(H,31,38)(H,32,41)/t14-,15-,17-,18-,19+,20+/m0/s1" 
X9Z InChIKey         InChI                1.06  XDHKGBBFOISQMJ-AMQFHODYSA-N                                                                                                                                                                                                            
X9Z SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](CN3CCCC3=O)[C@@H](O)C(=O)N4CCC4)C2(C)C"                                                                                                                          
X9Z SMILES           CACTVS               3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](CN3CCCC3=O)[CH](O)C(=O)N4CCC4)C2(C)C"                                                                                                                                   
X9Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](CN3CCCC3=O)[C@H](C(=O)N4CCC4)O)C"                                                                                                                         
X9Z SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CN3CCCC3=O)C(C(=O)N4CCC4)O)C"                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X9Z "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-N-[(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-(2-oxopyrrolidin-1-yl)butan-2-yl]-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                                                       
X9Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S},3~{R})-4-(azetidin-1-yl)-3-oxidanyl-4-oxidanylidene-1-(2-oxidanylidenepyrrolidin-1-yl)butan-2-yl]-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X9Z "Create component" 2022-11-08 RCSB 
X9Z "Initial release"  2023-10-11 RCSB 
X9Z "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            X9Z 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C18 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
