data_VKZ
# 
_chem_comp.id                                    VKZ 
_chem_comp.name                                  "4-[2-(4-azanyl-9-chloranyl-2',3',4',5',6'-pentamethyl-7-oxidanylidene-spiro[1$l^{4},8-diaza-9$l^{8}-iridabicyclo[4.3.0]nona-1,3,5-triene-9,1'-1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane]-8-yl)ethyl]benzenesulfonamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H30 Cl Ir N4 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2021-05-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        682.255 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VKZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ONM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VKZ O1  O1  O  0 1 N N N N N N -1.127 11.359 20.294 -1.127 11.359 20.294 O1  VKZ 1  
VKZ C13 C1  C  0 1 N N N N N N -5.374 1.841  20.787 -5.374 1.841  20.787 C13 VKZ 2  
VKZ C14 C2  C  0 1 N N N N N N -4.722 1.776  22.136 -4.722 1.776  22.136 C14 VKZ 3  
VKZ C21 C3  C  0 1 N N N N N N -4.443 2.920  23.096 -4.443 2.920  23.096 C21 VKZ 4  
VKZ C15 C4  C  0 1 N N N N N N -4.425 0.343  22.418 -4.425 0.343  22.418 C15 VKZ 5  
VKZ C20 C5  C  0 1 N N N N N N -3.821 -0.232 23.695 -3.821 -0.232 23.695 C20 VKZ 6  
VKZ C16 C6  C  0 1 N N N N N N -4.883 -0.441 21.255 -4.883 -0.441 21.255 C16 VKZ 7  
VKZ C19 C7  C  0 1 N N N N N N -4.793 -1.937 21.176 -4.793 -1.937 21.176 C19 VKZ 8  
VKZ C22 C8  C  0 1 N N N N N N -5.894 3.099  20.094 -5.894 3.099  20.094 C22 VKZ 9  
VKZ C17 C9  C  0 1 N N N N N N -5.457 0.472  20.234 -5.457 0.472  20.234 C17 VKZ 10 
VKZ C18 C10 C  0 1 N N N N N N -6.091 0.090  18.882 -6.091 0.090  18.882 C18 VKZ 11 
VKZ IR1 IR1 IR 0 0 N N N N N N -3.381 0.996  20.647 -3.381 0.996  20.647 IR1 VKZ 12 
VKZ CL1 CL1 CL 0 0 N N N N N N -2.641 0.254  18.437 -2.641 0.254  18.437 CL1 VKZ 13 
VKZ N1  N1  N  1 1 Y N N N N N -1.590 0.244  21.027 -1.590 0.244  21.027 N1  VKZ 14 
VKZ C1  C11 C  0 1 Y N N N N N -1.256 -0.923 21.447 -1.256 -0.923 21.447 C1  VKZ 15 
VKZ C2  C12 C  0 1 Y N N N N N 0.035  -1.264 21.607 0.035  -1.264 21.607 C2  VKZ 16 
VKZ C5  C13 C  0 1 Y N N N N N -0.576 1.181  20.742 -0.576 1.181  20.742 C5  VKZ 17 
VKZ N4  N2  N  0 1 N N N N N N 2.518  -0.867 21.549 2.518  -0.867 21.549 N4  VKZ 18 
VKZ C3  C14 C  0 1 Y N N N N N 1.085  -0.441 21.346 1.085  -0.441 21.346 C3  VKZ 19 
VKZ C4  C15 C  0 1 Y N N N N N 0.848  0.798  20.925 0.848  0.798  20.925 C4  VKZ 20 
VKZ S1  S1  S  0 1 N N N N N N -0.627 10.415 19.330 -0.627 10.415 19.330 S1  VKZ 21 
VKZ C10 C16 C  0 1 Y N N N N N -1.224 8.906  19.669 -1.224 8.906  19.669 C10 VKZ 22 
VKZ O2  O2  O  0 1 N N N N N N 0.791  10.274 19.258 0.791  10.274 19.258 O2  VKZ 23 
VKZ C11 C17 C  0 1 Y N N N N N -0.382 7.830  20.158 -0.382 7.830  20.158 C11 VKZ 24 
VKZ C12 C18 C  0 1 Y N N N N N -0.933 6.612  20.455 -0.933 6.612  20.455 C12 VKZ 25 
VKZ C9  C19 C  0 1 Y N N N N N -2.630 8.545  19.520 -2.630 8.545  19.520 C9  VKZ 26 
VKZ C8  C20 C  0 1 Y N N N N N -3.066 7.297  19.769 -3.066 7.297  19.769 C8  VKZ 27 
VKZ C23 C21 C  0 1 N N N N N N -2.643 4.051  19.662 -2.643 4.051  19.662 C23 VKZ 28 
VKZ C24 C22 C  0 1 N N N N N N -2.785 5.101  20.515 -2.785 5.101  20.515 C24 VKZ 29 
VKZ N3  N3  N  0 1 N N N N N N -1.028 10.944 18.020 -1.028 10.944 18.020 N3  VKZ 30 
VKZ C7  C23 C  0 1 Y N N N N N -2.248 6.335  20.239 -2.248 6.335  20.239 C7  VKZ 31 
VKZ N2  N4  N  0 1 N N N N N N -2.380 2.756  20.177 -2.380 2.756  20.177 N2  VKZ 32 
VKZ C6  C24 C  0 1 N N N N N N -1.003 2.507  20.259 -1.003 2.507  20.259 C6  VKZ 33 
VKZ O3  O3  O  0 1 N N N N N N -0.098 3.304  20.030 -0.098 3.304  20.030 O3  VKZ 34 
VKZ H1  H1  H  0 1 N N N N N N -3.952 2.530  24.000 -3.952 2.530  24.000 H1  VKZ 35 
VKZ H2  H2  H  0 1 N N N N N N -3.784 3.654  22.609 -3.784 3.654  22.610 H2  VKZ 36 
VKZ H3  H3  H  0 1 N N N N N N -5.391 3.405  23.374 -5.391 3.405  23.374 H3  VKZ 37 
VKZ H4  H4  H  0 1 N N N N N N -3.725 -1.323 23.597 -3.725 -1.323 23.597 H4  VKZ 38 
VKZ H5  H5  H  0 1 N N N N N N -2.827 0.210  23.862 -2.827 0.210  23.862 H5  VKZ 39 
VKZ H6  H6  H  0 1 N N N N N N -4.475 0.003  24.548 -4.475 0.003  24.548 H6  VKZ 40 
VKZ H7  H7  H  0 1 N N N N N N -5.198 -2.279 20.212 -5.198 -2.279 20.212 H7  VKZ 41 
VKZ H8  H8  H  0 1 N N N N N N -3.741 -2.246 21.261 -3.741 -2.246 21.261 H8  VKZ 42 
VKZ H9  H9  H  0 1 N N N N N N -5.374 -2.383 21.997 -5.374 -2.383 21.997 H9  VKZ 43 
VKZ H10 H10 H  0 1 N N N N N N -6.319 2.830  19.116 -6.319 2.830  19.116 H10 VKZ 44 
VKZ H11 H11 H  0 1 N N N N N N -6.672 3.565  20.716 -6.672 3.565  20.716 H11 VKZ 45 
VKZ H12 H12 H  0 1 N N N N N N -5.065 3.808  19.951 -5.065 3.808  19.951 H12 VKZ 46 
VKZ H13 H13 H  0 1 N N N N N N -6.009 -0.997 18.732 -6.009 -0.997 18.732 H13 VKZ 47 
VKZ H14 H14 H  0 1 N N N N N N -7.152 0.382  18.879 -7.152 0.382  18.879 H14 VKZ 48 
VKZ H15 H15 H  0 1 N N N N N N -5.565 0.613  18.070 -5.565 0.613  18.070 H15 VKZ 49 
VKZ H16 H16 H  0 1 N N N N N N -2.027 -1.644 21.676 -2.027 -1.644 21.676 H16 VKZ 50 
VKZ H17 H17 H  0 1 N N N N N N 0.252  -2.259 21.967 0.252  -2.259 21.967 H17 VKZ 51 
VKZ H18 H18 H  0 1 N N N N N N 3.128  -0.115 21.299 3.128  -0.115 21.299 H18 VKZ 52 
VKZ H19 H19 H  0 1 N N N N N N 2.661  -1.107 22.509 2.661  -1.107 22.509 H19 VKZ 53 
VKZ H20 H20 H  0 1 N N N N N N 1.651  1.492  20.726 1.651  1.492  20.726 H20 VKZ 54 
VKZ H21 H21 H  0 1 N N N N N N 0.678  7.990  20.288 0.678  7.990  20.288 H21 VKZ 55 
VKZ H22 H22 H  0 1 N N N N N N -0.301 5.844  20.876 -0.301 5.844  20.876 H22 VKZ 56 
VKZ H23 H23 H  0 1 N N N N N N -3.337 9.297  19.202 -3.337 9.297  19.202 H23 VKZ 57 
VKZ H24 H24 H  0 1 N N N N N N -4.103 7.059  19.587 -4.103 7.059  19.587 H24 VKZ 58 
VKZ H25 H25 H  0 1 N N N N N N -3.577 3.981  19.085 -3.577 3.981  19.085 H25 VKZ 59 
VKZ H26 H26 H  0 1 N N N N N N -1.812 4.300  18.986 -1.812 4.300  18.986 H26 VKZ 60 
VKZ H27 H27 H  0 1 N N N N N N -3.867 5.255  20.638 -3.867 5.255  20.638 H27 VKZ 61 
VKZ H28 H28 H  0 1 N N N N N N -2.349 4.782  21.473 -2.349 4.782  21.473 H28 VKZ 62 
VKZ H29 H29 H  0 1 N N N N N N -0.708 10.329 17.299 -0.708 10.329 17.299 H29 VKZ 63 
VKZ H30 H30 H  0 1 N N N N N N -2.025 11.014 17.980 -2.025 11.014 17.980 H30 VKZ 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VKZ O1  S1  DOUB N N 1  
VKZ C13 C14 SING N N 2  
VKZ C13 C22 SING N N 3  
VKZ C13 C17 SING N N 4  
VKZ C13 IR1 SING N N 5  
VKZ C14 C21 SING N N 6  
VKZ C14 C15 SING N N 7  
VKZ C14 IR1 SING N N 8  
VKZ C15 C20 SING N N 9  
VKZ C15 C16 SING N N 10 
VKZ C15 IR1 SING N N 11 
VKZ C16 C19 SING N N 12 
VKZ C16 C17 SING N N 13 
VKZ C16 IR1 SING N N 14 
VKZ C17 C18 SING N N 15 
VKZ C17 IR1 SING N N 16 
VKZ IR1 N1  SING N N 17 
VKZ IR1 N2  SING N N 18 
VKZ N1  C1  DOUB Y N 19 
VKZ N1  C5  SING Y N 20 
VKZ C1  C2  SING Y N 21 
VKZ C2  C3  DOUB Y N 22 
VKZ C5  C4  DOUB Y N 23 
VKZ C5  C6  SING N N 24 
VKZ N4  C3  SING N N 25 
VKZ C3  C4  SING Y N 26 
VKZ S1  C10 SING N N 27 
VKZ S1  O2  DOUB N N 28 
VKZ S1  N3  SING N N 29 
VKZ C10 C11 DOUB Y N 30 
VKZ C10 C9  SING Y N 31 
VKZ C11 C12 SING Y N 32 
VKZ C12 C7  DOUB Y N 33 
VKZ C9  C8  DOUB Y N 34 
VKZ C8  C7  SING Y N 35 
VKZ C23 C24 SING N N 36 
VKZ C23 N2  SING N N 37 
VKZ C24 C7  SING N N 38 
VKZ N2  C6  SING N N 39 
VKZ C6  O3  DOUB N N 40 
VKZ IR1 CL1 SING N N 41 
VKZ C21 H1  SING N N 42 
VKZ C21 H2  SING N N 43 
VKZ C21 H3  SING N N 44 
VKZ C20 H4  SING N N 45 
VKZ C20 H5  SING N N 46 
VKZ C20 H6  SING N N 47 
VKZ C19 H7  SING N N 48 
VKZ C19 H8  SING N N 49 
VKZ C19 H9  SING N N 50 
VKZ C22 H10 SING N N 51 
VKZ C22 H11 SING N N 52 
VKZ C22 H12 SING N N 53 
VKZ C18 H13 SING N N 54 
VKZ C18 H14 SING N N 55 
VKZ C18 H15 SING N N 56 
VKZ C1  H16 SING N N 57 
VKZ C2  H17 SING N N 58 
VKZ N4  H18 SING N N 59 
VKZ N4  H19 SING N N 60 
VKZ C4  H20 SING N N 61 
VKZ C11 H21 SING N N 62 
VKZ C12 H22 SING N N 63 
VKZ C9  H23 SING N N 64 
VKZ C8  H24 SING N N 65 
VKZ C23 H25 SING N N 66 
VKZ C23 H26 SING N N 67 
VKZ C24 H27 SING N N 68 
VKZ C24 H28 SING N N 69 
VKZ N3  H29 SING N N 70 
VKZ N3  H30 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VKZ InChI            InChI                1.03  "InChI=1S/C14H16N4O3S.C10H15.ClH.Ir/c15-11-6-8-17-13(9-11)14(19)18-7-5-10-1-3-12(4-2-10)22(16,20)21;1-6-7(2)9(4)10(5)8(6)3;;/h1-4,6,8-9H,5,7H2,(H5,15,16,17,18,19,20,21);1-5H3;1H;/q;;;+3/p-2" 
VKZ InChIKey         InChI                1.03  OZNKLFOMSCDAEE-UHFFFAOYSA-L                                                                                                                                                                    
VKZ SMILES_CANONICAL CACTVS               3.385 "CC1C(C)C(C)C(C)C1C.Nc2cc[n+]3[Ir](Cl)N(CCc4ccc(cc4)[S](N)(=O)=O)C(=O)c3c2"                                                                                                                    
VKZ SMILES           CACTVS               3.385 "CC1C(C)C(C)C(C)C1C.Nc2cc[n+]3[Ir](Cl)N(CCc4ccc(cc4)[S](N)(=O)=O)C(=O)c3c2"                                                                                                                    
VKZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC12C3([Ir]1456(C2(C4(C53C)C)C)([n+]7ccc(cc7C(=O)N6CCc8ccc(cc8)S(=O)(=O)N)N)Cl)C"                                                                                                             
VKZ SMILES           "OpenEye OEToolkits" 2.0.7 "CC12C3([Ir]1456(C2(C4(C53C)C)C)([n+]7ccc(cc7C(=O)N6CCc8ccc(cc8)S(=O)(=O)N)N)Cl)C"                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           VKZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[2-(4'-azanyl-1-chloranyl-2,3,4,5,6-pentamethyl-7'-oxidanylidene-spiro[1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane-1,9'-8-aza-1-azonia-9$l^{8}-iridabicyclo[4.3.0]nona-1,3,5-triene]-8'-yl)ethyl]benzenesulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VKZ "Create component" 2021-05-26 PDBE 
VKZ "Initial release"  2021-12-01 RCSB 
VKZ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VKZ 
_pdbx_chem_comp_pcm.modified_residue_id                VI3 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               N4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
