data_RUZ
#

_chem_comp.id                                   RUZ
_chem_comp.name                                 "[(2~{R},3~{S},4~{R},5~{R})-5-[7-azanyl-5-(hydroxymethyl)benzimidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-oxidanyl-propanoyl]sulfamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H23 N5 O9 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SerS7HMDDA
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-21
_chem_comp.pdbx_modified_date                   2020-11-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       461.447
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RUZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AP1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RUZ  C1     C1   C  0  1  Y  N  N  -11.324  -33.228   1.573   5.800  -0.064   0.544  C1     RUZ   1  
RUZ  C2     C2   C  0  1  Y  N  N  -11.958  -32.919   2.772   6.032  -1.348   0.072  C2     RUZ   2  
RUZ  C3     C3   C  0  1  Y  N  N  -11.557  -31.801   3.493   5.019  -2.086  -0.468  C3     RUZ   3  
RUZ  C4     C4   C  0  1  Y  N  N  -10.517  -30.996   3.030   3.729  -1.550  -0.551  C4     RUZ   4  
RUZ  C5     C5   C  0  1  Y  N  N   -9.853  -31.305   1.828   3.488  -0.253  -0.075  C5     RUZ   5  
RUZ  C6     C6   C  0  1  Y  N  N  -10.279  -32.446   1.063   4.532   0.487   0.479  C6     RUZ   6  
RUZ  C8     C7   C  0  1  Y  N  N   -9.046  -29.481   2.749   1.621  -1.123  -0.870  C8     RUZ   7  
RUZ  N      N1   N  0  1  N  N  N  -10.065  -29.839  -7.752  -3.221  -3.624  -0.003  N      RUZ   8  
RUZ  CA     C8   C  0  1  N  N  S   -8.981  -30.688  -7.231  -4.134  -2.602  -0.533  CA     RUZ   9  
RUZ  CB     C9   C  0  1  N  N  N   -7.717  -29.843  -7.068  -5.573  -3.118  -0.465  CB     RUZ  10  
RUZ  OG     O1   O  0  1  N  N  N   -7.824  -28.910  -5.990  -5.717  -4.242  -1.335  OG     RUZ  11  
RUZ  C      C10  C  0  1  N  N  N   -9.369  -31.310  -5.905  -4.012  -1.345   0.289  C      RUZ  12  
RUZ  O      O2   O  0  1  N  N  N  -10.445  -31.047  -5.374  -3.543  -1.394   1.406  O      RUZ  13  
RUZ  N3S    N2   N  0  1  N  N  N   -8.473  -32.170  -5.342  -4.423  -0.166  -0.219  N3S    RUZ  14  
RUZ  S      S1   S  0  1  N  N  N   -8.648  -32.888  -3.935  -4.289   1.216   0.684  S      RUZ  15  
RUZ  O1S    O3   O  0  1  N  N  N   -7.458  -33.612  -3.668  -4.769   2.276  -0.131  O1S    RUZ  16  
RUZ  O2S    O4   O  0  1  N  N  N   -9.917  -33.523  -3.880  -4.829   0.913   1.964  O2S    RUZ  17  
RUZ  "O5'"  O5   O  0  1  N  N  N   -8.804  -31.705  -2.869  -2.804   1.474   0.895  "O5'"  RUZ  18  
RUZ  "C5'"  C11  C  0  1  N  N  N   -7.878  -30.580  -2.933  -2.133   1.983  -0.260  "C5'"  RUZ  19  
RUZ  "C4'"  C12  C  0  1  N  N  R   -7.354  -30.342  -1.540  -0.654   2.203   0.066  "C4'"  RUZ  20  
RUZ  "O4'"  O6   O  0  1  N  N  N   -8.438  -30.101  -0.624   0.017   0.936   0.240  "O4'"  RUZ  21  
RUZ  "C1'"  C13  C  0  1  N  N  R   -7.854  -30.183   0.657   1.420   1.218   0.043  "C1'"  RUZ  22  
RUZ  "C2'"  C14  C  0  1  N  N  R   -6.809  -31.307   0.599   1.461   2.207  -1.143  "C2'"  RUZ  23  
RUZ  "O2'"  O7   O  0  1  N  N  N   -5.615  -30.841   1.211   2.483   3.186  -0.943  "O2'"  RUZ  24  
RUZ  "C3'"  C15  C  0  1  N  N  S   -6.601  -31.514  -0.914   0.065   2.870  -1.128  "C3'"  RUZ  25  
RUZ  "O3'"  O8   O  0  1  N  N  N   -5.229  -31.498  -1.284   0.182   4.279  -0.919  "O3'"  RUZ  26  
RUZ  N7     N3   N  0  1  Y  N  N   -8.892  -30.321   1.677   2.145  -0.010  -0.291  N7     RUZ  27  
RUZ  N9     N4   N  0  1  Y  N  N   -9.988  -29.837   3.583   2.547  -2.024  -1.023  N9     RUZ  28  
RUZ  N6     N5   N  0  1  N  N  N   -9.761  -32.785  -0.177   4.301   1.781   0.956  N6     RUZ  29  
RUZ  C2M    C16  C  0  1  N  N  N  -13.091  -33.768   3.274   7.418  -1.934   0.156  C2M    RUZ  30  
RUZ  O2M    O9   O  0  1  N  N  N  -14.263  -32.988   3.389   7.571  -2.618   1.401  O2M    RUZ  31  
RUZ  H1     H1   H  0  1  N  N  N  -11.647  -34.097   1.018   6.613   0.507   0.969  H1     RUZ  32  
RUZ  H2     H2   H  0  1  N  N  N  -12.055  -31.554   4.419   5.213  -3.085  -0.832  H2     RUZ  33  
RUZ  H3     H3   H  0  1  N  N  N   -8.440  -28.599   2.893   0.588  -1.242  -1.161  H3     RUZ  34  
RUZ  H4     H4   H  0  1  N  N  N  -10.895  -30.386  -7.861  -3.441  -3.842   0.957  H4     RUZ  35  
RUZ  H5     H5   H  0  1  N  N  N  -10.240  -29.092  -7.111  -3.237  -4.455  -0.576  H5     RUZ  36  
RUZ  H7     H7   H  0  1  N  N  N   -8.773  -31.493  -7.951  -3.874  -2.386  -1.569  H7     RUZ  37  
RUZ  H8     H8   H  0  1  N  N  N   -6.866  -30.513  -6.873  -5.803  -3.418   0.558  H8     RUZ  38  
RUZ  H9     H9   H  0  1  N  N  N   -7.540  -29.287  -8.001  -6.257  -2.329  -0.774  H9     RUZ  39  
RUZ  H10    H10  H  0  1  N  N  N   -7.020  -28.408  -5.924  -6.606  -4.622  -1.342  H10    RUZ  40  
RUZ  H11    H11  H  0  1  N  N  N   -7.638  -32.365  -5.856  -4.798  -0.127  -1.112  H11    RUZ  41  
RUZ  H12    H12  H  0  1  N  N  N   -7.045  -30.817  -3.612  -2.222   1.267  -1.077  H12    RUZ  42  
RUZ  H13    H13  H  0  1  N  N  N   -8.402  -29.683  -3.295  -2.585   2.929  -0.555  H13    RUZ  43  
RUZ  H14    H14  H  0  1  N  N  N   -6.685  -29.469  -1.559  -0.551   2.816   0.961  H14    RUZ  44  
RUZ  H15    H15  H  0  1  N  N  N   -7.309  -29.248   0.854   1.843   1.677   0.937  H15    RUZ  45  
RUZ  H16    H16  H  0  1  N  N  N   -7.195  -32.224   1.068   1.623   1.673  -2.079  H16    RUZ  46  
RUZ  H17    H17  H  0  1  N  N  N   -5.762  -30.719   2.142   2.553   3.833  -1.658  H17    RUZ  47  
RUZ  H18    H18  H  0  1  N  N  N   -7.078  -32.458  -1.218  -0.465   2.664  -2.057  H18    RUZ  48  
RUZ  H19    H19  H  0  1  N  N  N   -4.784  -32.235  -0.883   0.627   4.748  -1.638  H19    RUZ  49  
RUZ  H20    H20  H  0  1  N  N  N   -9.027  -32.149  -0.417   5.004   2.257   1.426  H20    RUZ  50  
RUZ  H21    H21  H  0  1  N  N  N   -9.398  -33.716  -0.143   3.439   2.203   0.817  H21    RUZ  51  
RUZ  H22    H22  H  0  1  N  N  N  -13.270  -34.592   2.568   7.567  -2.635  -0.665  H22    RUZ  52  
RUZ  H23    H23  H  0  1  N  N  N  -12.829  -34.180   4.260   8.156  -1.134   0.089  H23    RUZ  53  
RUZ  H24    H24  H  0  1  N  N  N  -14.975  -33.531   3.707   8.441  -3.022   1.524  H24    RUZ  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RUZ  N      CA     SING  N  N   1  
RUZ  CA     CB     SING  N  N   2  
RUZ  CA     C      SING  N  N   3  
RUZ  CB     OG     SING  N  N   4  
RUZ  C      O      DOUB  N  N   5  
RUZ  C      N3S    SING  N  N   6  
RUZ  N3S    S      SING  N  N   7  
RUZ  S      O2S    DOUB  N  N   8  
RUZ  S      O1S    DOUB  N  N   9  
RUZ  S      "O5'"  SING  N  N  10  
RUZ  "C5'"  "O5'"  SING  N  N  11  
RUZ  "C5'"  "C4'"  SING  N  N  12  
RUZ  "C4'"  "C3'"  SING  N  N  13  
RUZ  "C4'"  "O4'"  SING  N  N  14  
RUZ  "O3'"  "C3'"  SING  N  N  15  
RUZ  "C3'"  "C2'"  SING  N  N  16  
RUZ  "O4'"  "C1'"  SING  N  N  17  
RUZ  N6     C6     SING  N  N  18  
RUZ  "C2'"  "C1'"  SING  N  N  19  
RUZ  "C2'"  "O2'"  SING  N  N  20  
RUZ  "C1'"  N7     SING  N  N  21  
RUZ  C6     C1     DOUB  Y  N  22  
RUZ  C6     C5     SING  Y  N  23  
RUZ  C1     C2     SING  Y  N  24  
RUZ  N7     C5     SING  Y  N  25  
RUZ  N7     C8     SING  Y  N  26  
RUZ  C5     C4     DOUB  Y  N  27  
RUZ  C8     N9     DOUB  Y  N  28  
RUZ  C2     C2M    SING  N  N  29  
RUZ  C2     C3     DOUB  Y  N  30  
RUZ  C4     C3     SING  Y  N  31  
RUZ  C4     N9     SING  Y  N  32  
RUZ  C2M    O2M    SING  N  N  33  
RUZ  C1     H1     SING  N  N  34  
RUZ  C3     H2     SING  N  N  35  
RUZ  C8     H3     SING  N  N  36  
RUZ  N      H4     SING  N  N  37  
RUZ  N      H5     SING  N  N  38  
RUZ  CA     H7     SING  N  N  39  
RUZ  CB     H8     SING  N  N  40  
RUZ  CB     H9     SING  N  N  41  
RUZ  OG     H10    SING  N  N  42  
RUZ  N3S    H11    SING  N  N  43  
RUZ  "C5'"  H12    SING  N  N  44  
RUZ  "C5'"  H13    SING  N  N  45  
RUZ  "C4'"  H14    SING  N  N  46  
RUZ  "C1'"  H15    SING  N  N  47  
RUZ  "C2'"  H16    SING  N  N  48  
RUZ  "O2'"  H17    SING  N  N  49  
RUZ  "C3'"  H18    SING  N  N  50  
RUZ  "O3'"  H19    SING  N  N  51  
RUZ  N6     H20    SING  N  N  52  
RUZ  N6     H21    SING  N  N  53  
RUZ  C2M    H22    SING  N  N  54  
RUZ  C2M    H23    SING  N  N  55  
RUZ  O2M    H24    SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RUZ  InChI             InChI                 1.03   "InChI=1S/C16H23N5O9S/c17-8-1-7(3-22)2-10-12(8)21(6-19-10)16-14(25)13(24)11(30-16)5-29-31(27,28)20-15(26)9(18)4-23/h1-2,6,9,11,13-14,16,22-25H,3-5,17-18H2,(H,20,26)/t9-,11+,13+,14+,16+/m0/s1"  
RUZ  InChIKey          InChI                 1.03   YZMBOMBSTSCXHY-LMOQKQACSA-N  
RUZ  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CO)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3cc(CO)cc(N)c23"  
RUZ  SMILES            CACTVS                3.385  "N[CH](CO)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3cc(CO)cc(N)c23"  
RUZ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c(cc2c(c1N)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COS(=O)(=O)NC(=O)[C@H](CO)N)O)O)CO"  
RUZ  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c(cc2c(c1N)n(cn2)C3C(C(C(O3)COS(=O)(=O)NC(=O)C(CO)N)O)O)CO"  
#
_pdbx_chem_comp_identifier.comp_id          RUZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-[7-azanyl-5-(hydroxymethyl)benzimidazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(2~{S})-2-azanyl-3-oxidanyl-propanoyl]sulfamate"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RUZ
_pdbx_chem_comp_synonyms.name        SerS7HMDDA
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RUZ  "Create component"  2020-10-21  PDBE  
RUZ  "Initial release"   2020-11-11  RCSB  
##
