data_R1Z
#

_chem_comp.id                                   R1Z
_chem_comp.name                                 "Delta-[Ru(bpy)2dppz]2+"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C38 H26 N8 Ru"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-03-15
_chem_comp.pdbx_modified_date                   2013-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       695.737
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R1Z
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       4E1U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R1Z  RU1   RU1   RU  0  0  N  N  N  14.065   4.821  15.444  ?  ?  ?  RU1   R1Z   1  
R1Z  N7    N7    N   0  1  Y  N  N  12.887   4.131  16.990  ?  ?  ?  N7    R1Z   2  
R1Z  C29   C29   C   0  1  Y  N  N  11.707   4.643  17.379  ?  ?  ?  C29   R1Z   3  
R1Z  C30   C30   C   0  1  Y  N  N  10.927   4.025  18.344  ?  ?  ?  C30   R1Z   4  
R1Z  C31   C31   C   0  1  Y  N  N  11.381   2.861  18.940  ?  ?  ?  C31   R1Z   5  
R1Z  C32   C32   C   0  1  Y  N  N  12.603   2.323  18.555  ?  ?  ?  C32   R1Z   6  
R1Z  C33   C33   C   0  1  Y  N  N  13.326   2.994  17.583  ?  ?  ?  C33   R1Z   7  
R1Z  C34   C34   C   0  1  Y  N  N  14.648   2.503  17.144  ?  ?  ?  C34   R1Z   8  
R1Z  N8    N8    N   0  1  Y  N  N  15.226   3.310  16.124  ?  ?  ?  N8    R1Z   9  
R1Z  C38   C38   C   0  1  Y  N  N  16.417   2.972  15.654  ?  ?  ?  C38   R1Z  10  
R1Z  C37   C37   C   0  1  Y  N  N  17.149   1.808  16.219  ?  ?  ?  C37   R1Z  11  
R1Z  C36   C36   C   0  1  Y  N  N  16.609   1.083  17.192  ?  ?  ?  C36   R1Z  12  
R1Z  C35   C35   C   0  1  Y  N  N  15.291   1.437  17.689  ?  ?  ?  C35   R1Z  13  
R1Z  N6    N6    N   0  1  Y  N  N  13.375   3.489  14.020  ?  ?  ?  N6    R1Z  14  
R1Z  C28   C28   C   0  1  Y  N  N  12.363   2.627  14.194  ?  ?  ?  C28   R1Z  15  
R1Z  C27   C27   C   0  1  Y  N  N  11.982   1.733  13.212  ?  ?  ?  C27   R1Z  16  
R1Z  C26   C26   C   0  1  Y  N  N  12.673   1.733  12.015  ?  ?  ?  C26   R1Z  17  
R1Z  C25   C25   C   0  1  Y  N  N  13.717   2.615  11.814  ?  ?  ?  C25   R1Z  18  
R1Z  C24   C24   C   0  1  Y  N  N  14.028   3.458  12.853  ?  ?  ?  C24   R1Z  19  
R1Z  C23   C23   C   0  1  Y  N  N  15.113   4.438  12.720  ?  ?  ?  C23   R1Z  20  
R1Z  N5    N5    N   0  1  Y  N  N  15.266   5.260  13.877  ?  ?  ?  N5    R1Z  21  
R1Z  C19   C19   C   0  1  Y  N  N  16.180   6.213  13.849  ?  ?  ?  C19   R1Z  22  
R1Z  C20   C20   C   0  1  Y  N  N  17.058   6.406  12.675  ?  ?  ?  C20   R1Z  23  
R1Z  C21   C21   C   0  1  Y  N  N  16.935   5.613  11.615  ?  ?  ?  C21   R1Z  24  
R1Z  C22   C22   C   0  1  Y  N  N  15.906   4.582  11.620  ?  ?  ?  C22   R1Z  25  
R1Z  C10   C10   C   0  1  Y  N  N  11.562  13.213  16.779  ?  ?  ?  C10   R1Z  26  
R1Z  C11   C11   C   0  1  Y  N  N  12.304  12.030  16.901  ?  ?  ?  C11   R1Z  27  
R1Z  N4    N4    N   0  1  Y  N  N  11.891  10.927  16.219  ?  ?  ?  N4    R1Z  28  
R1Z  C12   C12   C   0  1  Y  N  N  12.645   9.826  16.322  ?  ?  ?  C12   R1Z  29  
R1Z  C1    C1    C   0  1  Y  N  N  12.287   8.648  15.603  ?  ?  ?  C1    R1Z  30  
R1Z  C13   C13   C   0  1  Y  N  N  11.148   8.593  14.756  ?  ?  ?  C13   R1Z  31  
R1Z  C14   C14   C   0  1  Y  N  N  10.890   7.420  14.038  ?  ?  ?  C14   R1Z  32  
R1Z  C15   C15   C   0  1  Y  N  N  11.740   6.353  14.225  ?  ?  ?  C15   R1Z  33  
R1Z  N1    N1    N   0  1  Y  N  N  12.790   6.369  15.037  ?  ?  ?  N1    R1Z  34  
R1Z  C2    C2    C   0  1  Y  N  N  13.067   7.488  15.724  ?  ?  ?  C2    R1Z  35  
R1Z  C3    C3    C   0  1  Y  N  N  14.183   7.470  16.561  ?  ?  ?  C3    R1Z  36  
R1Z  C9    C9    C   0  1  Y  N  N  11.961  14.329  17.477  ?  ?  ?  C9    R1Z  37  
R1Z  C8    C8    C   0  1  Y  N  N  13.074  14.295  18.289  ?  ?  ?  C8    R1Z  38  
R1Z  C7    C7    C   0  1  Y  N  N  13.856  13.160  18.400  ?  ?  ?  C7    R1Z  39  
R1Z  C6    C6    C   0  1  Y  N  N  13.480  12.015  17.694  ?  ?  ?  C6    R1Z  40  
R1Z  N3    N3    N   0  1  Y  N  N  14.216  10.876  17.815  ?  ?  ?  N3    R1Z  41  
R1Z  C5    C5    C   0  1  Y  N  N  13.811   9.794  17.132  ?  ?  ?  C5    R1Z  42  
R1Z  C4    C4    C   0  1  Y  N  N  14.583   8.603  17.248  ?  ?  ?  C4    R1Z  43  
R1Z  C18   C18   C   0  1  Y  N  N  15.749   8.486  18.063  ?  ?  ?  C18   R1Z  44  
R1Z  C17   C17   C   0  1  Y  N  N  16.425   7.268  18.153  ?  ?  ?  C17   R1Z  45  
R1Z  C16   C16   C   0  1  Y  N  N  15.940   6.215  17.409  ?  ?  ?  C16   R1Z  46  
R1Z  N2    N2    N   0  1  Y  N  N  14.865   6.298  16.632  ?  ?  ?  N2    R1Z  47  
R1Z  H291  H291  H   0  0  N  N  N  11.357   5.560  16.928  ?  ?  ?  H291  R1Z  48  
R1Z  H301  H301  H   0  0  N  N  N   9.975   4.447  18.628  ?  ?  ?  H301  R1Z  49  
R1Z  H311  H311  H   0  0  N  N  N  10.789   2.374  19.700  ?  ?  ?  H311  R1Z  50  
R1Z  H321  H321  H   0  0  N  N  N  12.976   1.412  18.999  ?  ?  ?  H321  R1Z  51  
R1Z  H381  H381  H   0  0  N  N  N  16.860   3.546  14.854  ?  ?  ?  H381  R1Z  52  
R1Z  H371  H371  H   0  0  N  N  N  18.125   1.550  15.836  ?  ?  ?  H371  R1Z  53  
R1Z  H361  H361  H   0  0  N  N  N  17.143   0.241  17.608  ?  ?  ?  H361  R1Z  54  
R1Z  H351  H351  H   0  0  N  N  N  14.830   0.863  18.479  ?  ?  ?  H351  R1Z  55  
R1Z  H281  H281  H   0  0  N  N  N  11.828   2.632  15.132  ?  ?  ?  H281  R1Z  56  
R1Z  H271  H271  H   0  0  N  N  N  11.162   1.049  13.376  ?  ?  ?  H271  R1Z  57  
R1Z  H261  H261  H   0  0  N  N  N  12.396   1.041  11.234  ?  ?  ?  H261  R1Z  58  
R1Z  H251  H251  H   0  0  N  N  N  14.264   2.641  10.883  ?  ?  ?  H251  R1Z  59  
R1Z  H191  H191  H   0  0  N  N  N  16.289   6.866  14.703  ?  ?  ?  H191  R1Z  60  
R1Z  H201  H201  H   0  0  N  N  N  17.799   7.191  12.679  ?  ?  ?  H201  R1Z  61  
R1Z  H211  H211  H   0  0  N  N  N  17.588   5.731  10.763  ?  ?  ?  H211  R1Z  62  
R1Z  H221  H221  H   0  0  N  N  N  15.773   3.939  10.762  ?  ?  ?  H221  R1Z  63  
R1Z  H101  H101  H   0  0  N  N  N  10.688  13.248  16.145  ?  ?  ?  H101  R1Z  64  
R1Z  H131  H131  H   0  0  N  N  N  10.490   9.445  14.667  ?  ?  ?  H131  R1Z  65  
R1Z  H141  H141  H   0  0  N  N  N  10.052   7.354  13.360  ?  ?  ?  H141  R1Z  66  
R1Z  H151  H151  H   0  0  N  N  N  11.540   5.445  13.676  ?  ?  ?  H151  R1Z  67  
R1Z  H91   H91   H   0  1  N  N  N  11.395  15.244  17.388  ?  ?  ?  H91   R1Z  68  
R1Z  H81   H81   H   0  1  N  N  N  13.342  15.176  18.852  ?  ?  ?  H81   R1Z  69  
R1Z  H71   H71   H   0  1  N  N  N  14.740  13.159  19.020  ?  ?  ?  H71   R1Z  70  
R1Z  H181  H181  H   0  0  N  N  N  16.110   9.343  18.612  ?  ?  ?  H181  R1Z  71  
R1Z  H171  H171  H   0  0  N  N  N  17.295   7.155  18.782  ?  ?  ?  H171  R1Z  72  
R1Z  H161  H161  H   0  0  N  N  N  16.462   5.271  17.460  ?  ?  ?  H161  R1Z  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R1Z  C21  C22   DOUB  Y  N   1  
R1Z  C21  C20   SING  Y  N   2  
R1Z  C22  C23   SING  Y  N   3  
R1Z  C25  C26   DOUB  Y  N   4  
R1Z  C25  C24   SING  Y  N   5  
R1Z  C26  C27   SING  Y  N   6  
R1Z  C20  C19   DOUB  Y  N   7  
R1Z  C23  C24   SING  N  N   8  
R1Z  C23  N5    DOUB  Y  N   9  
R1Z  C24  N6    DOUB  Y  N  10  
R1Z  C27  C28   DOUB  Y  N  11  
R1Z  C19  N5    SING  Y  N  12  
R1Z  N5   RU1   SING  N  N  13  
R1Z  N6   C28   SING  Y  N  14  
R1Z  N6   RU1   SING  N  N  15  
R1Z  C14  C15   DOUB  Y  N  16  
R1Z  C14  C13   SING  Y  N  17  
R1Z  C15  N1    SING  Y  N  18  
R1Z  C13  C1    DOUB  Y  N  19  
R1Z  N1   RU1   SING  N  N  20  
R1Z  N1   C2    DOUB  Y  N  21  
R1Z  RU1  N8    SING  N  N  22  
R1Z  RU1  N2    SING  N  N  23  
R1Z  RU1  N7    SING  N  N  24  
R1Z  C1   C2    SING  Y  N  25  
R1Z  C1   C12   SING  Y  N  26  
R1Z  C38  N8    DOUB  Y  N  27  
R1Z  C38  C37   SING  Y  N  28  
R1Z  C2   C3    SING  Y  N  29  
R1Z  N8   C34   SING  Y  N  30  
R1Z  N4   C12   DOUB  Y  N  31  
R1Z  N4   C11   SING  Y  N  32  
R1Z  C37  C36   DOUB  Y  N  33  
R1Z  C12  C5    SING  Y  N  34  
R1Z  C3   N2    DOUB  Y  N  35  
R1Z  C3   C4    SING  Y  N  36  
R1Z  N2   C16   SING  Y  N  37  
R1Z  C10  C11   DOUB  Y  N  38  
R1Z  C10  C9    SING  Y  N  39  
R1Z  C11  C6    SING  Y  N  40  
R1Z  N7   C29   DOUB  Y  N  41  
R1Z  N7   C33   SING  Y  N  42  
R1Z  C5   C4    SING  Y  N  43  
R1Z  C5   N3    DOUB  Y  N  44  
R1Z  C34  C33   SING  N  N  45  
R1Z  C34  C35   DOUB  Y  N  46  
R1Z  C36  C35   SING  Y  N  47  
R1Z  C4   C18   DOUB  Y  N  48  
R1Z  C29  C30   SING  Y  N  49  
R1Z  C16  C17   DOUB  Y  N  50  
R1Z  C9   C8    DOUB  Y  N  51  
R1Z  C33  C32   DOUB  Y  N  52  
R1Z  C6   N3    SING  Y  N  53  
R1Z  C6   C7    DOUB  Y  N  54  
R1Z  C18  C17   SING  Y  N  55  
R1Z  C8   C7    SING  Y  N  56  
R1Z  C30  C31   DOUB  Y  N  57  
R1Z  C32  C31   SING  Y  N  58  
R1Z  C29  H291  SING  N  N  59  
R1Z  C30  H301  SING  N  N  60  
R1Z  C31  H311  SING  N  N  61  
R1Z  C32  H321  SING  N  N  62  
R1Z  C38  H381  SING  N  N  63  
R1Z  C37  H371  SING  N  N  64  
R1Z  C36  H361  SING  N  N  65  
R1Z  C35  H351  SING  N  N  66  
R1Z  C28  H281  SING  N  N  67  
R1Z  C27  H271  SING  N  N  68  
R1Z  C26  H261  SING  N  N  69  
R1Z  C25  H251  SING  N  N  70  
R1Z  C19  H191  SING  N  N  71  
R1Z  C20  H201  SING  N  N  72  
R1Z  C21  H211  SING  N  N  73  
R1Z  C22  H221  SING  N  N  74  
R1Z  C10  H101  SING  N  N  75  
R1Z  C13  H131  SING  N  N  76  
R1Z  C14  H141  SING  N  N  77  
R1Z  C15  H151  SING  N  N  78  
R1Z  C9   H91   SING  N  N  79  
R1Z  C8   H81   SING  N  N  80  
R1Z  C7   H71   SING  N  N  81  
R1Z  C18  H181  SING  N  N  82  
R1Z  C17  H171  SING  N  N  83  
R1Z  C16  H161  SING  N  N  84  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R1Z  SMILES            ACDLabs               12.01  "n1c3c9c8c4c(c3nc2c1cccc2)cccn4[Ru]7%12(n5ccccc5c6ccccn67)(n8ccc9)n%10ccccc%10c%11ccccn%11%12"  
R1Z  InChI             InChI                 1.03   "InChI=1S/C18H10N4.2C10H8N2.Ru/c1-2-8-14-13(7-1)21-17-11-5-3-9-19-15(11)16-12(18(17)22-14)6-4-10-20-16;2*1-3-7-11-9(5-1)10-6-2-4-8-12-10;/h1-10H;2*1-8H;"  
R1Z  InChIKey          InChI                 1.03   NGWQAIWPRVFOPE-UHFFFAOYSA-N  
R1Z  SMILES_CANONICAL  CACTVS                3.370  "[Ru]|1|2|3(|n4ccccc4c5ccccn|15)(|n6ccccc6c7ccccn|27)|n8cccc9c8c%10n|3cccc%10c%11nc%12ccccc%12nc9%11"  
R1Z  SMILES            CACTVS                3.370  "[Ru]|1|2|3(|n4ccccc4c5ccccn|15)(|n6ccccc6c7ccccn|27)|n8cccc9c8c%10n|3cccc%10c%11nc%12ccccc%12nc9%11"  
R1Z  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1ccc2c(c1)nc3c(n2)C4=CC=C[N]5=C4C6=[N]([Ru]578([N]9=C(C=CC=C9)C1=[N]7C=CC=C1)[N]1=CC=CC=C1C1=CC=CC=[N]81)C=CC=C36"  
R1Z  SMILES            "OpenEye OEToolkits"  1.7.6  "c1ccc2c(c1)nc3c(n2)C4=CC=C[N]5=C4C6=[N]([Ru]578([N]9=C(C=CC=C9)C1=[N]7C=CC=C1)[N]1=CC=CC=C1C1=CC=CC=[N]81)C=CC=C36"  
#
_pdbx_chem_comp_identifier.comp_id          R1Z
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)(dipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)ruthenium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R1Z  "Create component"  2012-03-15  RCSB  
R1Z  "Modify name"       2013-02-14  RCSB  
##
