data_L9Z
# 
_chem_comp.id                                    L9Z 
_chem_comp.name                                  "(1~{S},3~{S},4~{S},5~{R})-3-(aminomethyl)-3,4,5-tris(hydroxyl)cyclohexane-1-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H15 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-08-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        205.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L9Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6SFE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L9Z O16 O1  O 0 1 N N N N N N -17.088 -1.902 -14.662 -2.886 -1.401 0.710  O16 L9Z 1  
L9Z C14 C1  C 0 1 N N N N N N -16.757 -0.853 -14.022 -2.689 -0.433 0.014  C14 L9Z 2  
L9Z O15 O2  O 0 1 N N N N N N -16.368 0.199  -14.614 -3.725 0.292  -0.437 O15 L9Z 3  
L9Z C5  C2  C 0 1 N N S N N N -16.802 -0.854 -12.520 -1.280 -0.036 -0.344 C5  L9Z 4  
L9Z C6  C3  C 0 1 N N N N N N -15.393 -1.193 -12.027 -0.296 -1.017 0.297  C6  L9Z 5  
L9Z C1  C4  C 0 1 N N S N N N -15.314 -1.237 -10.500 1.135  -0.614 -0.066 C1  L9Z 6  
L9Z O28 O3  O 0 1 N N N N N N -15.399 0.084  -9.937  1.292  -0.642 -1.486 O28 L9Z 7  
L9Z C21 C5  C 0 1 N N N N N N -13.987 -1.891 -10.173 2.119  -1.594 0.575  C21 L9Z 8  
L9Z C4  C6  C 0 1 N N N N N N -17.824 -1.815 -11.927 -1.001 1.377  0.172  C4  L9Z 9  
L9Z C3  C7  C 0 1 N N R N N N -17.781 -1.734 -10.405 0.429  1.780  -0.191 C3  L9Z 10 
L9Z O19 O4  O 0 1 N N N N N N -18.791 -2.581 -9.839  0.689  3.099  0.292  O19 L9Z 11 
L9Z C2  C8  C 0 1 N N S N N N -16.403 -2.123 -9.898  1.414  0.799  0.450  C2  L9Z 12 
L9Z O17 O5  O 0 1 N N N N N N -16.331 -2.054 -8.466  2.750  1.176  0.111  O17 L9Z 13 
L9Z H1  H1  H 0 1 N N N N N N -16.374 0.055  -15.553 -4.610 0.000  -0.177 H1  L9Z 14 
L9Z H2  H2  H 0 1 N N N N N N -17.048 0.162  -12.179 -1.160 -0.058 -1.427 H2  L9Z 15 
L9Z H3  H3  H 0 1 N N N N N N -15.105 -2.177 -12.426 -0.415 -0.996 1.380  H3  L9Z 16 
L9Z H4  H4  H 0 1 N N N N N N -14.694 -0.428 -12.397 -0.494 -2.023 -0.071 H4  L9Z 17 
L9Z H5  H5  H 0 1 N N N N N N -15.348 0.029  -8.990  1.130  -1.508 -1.883 H5  L9Z 18 
L9Z H6  H6  H 0 1 N N N N N N -14.161 -2.595 -9.346  3.139  -1.307 0.317  H6  L9Z 19 
L9Z H7  H7  H 0 1 N N N N N N -13.664 -2.447 -11.066 2.000  -1.573 1.658  H7  L9Z 20 
L9Z H9  H9  H 0 1 N N N N N N -18.830 -1.543 -12.280 -1.702 2.075  -0.284 H9  L9Z 21 
L9Z H10 H10 H 0 1 N N N N N N -17.589 -2.841 -12.246 -1.121 1.398  1.256  H10 L9Z 22 
L9Z H11 H11 H 0 1 N N N N N N -17.974 -0.691 -10.112 0.549  1.758  -1.274 H11 L9Z 23 
L9Z H12 H12 H 0 1 N N N N N N -18.757 -2.525 -8.891  0.101  3.775  -0.074 H12 L9Z 24 
L9Z H13 H13 H 0 1 N N N N N N -16.207 -3.158 -10.216 1.294  0.821  1.534  H13 L9Z 25 
L9Z H14 H14 H 0 1 N N N N N N -17.007 -2.604 -8.088  2.996  2.062  0.408  H14 L9Z 26 
L9Z N1  N1  N 0 1 N Y N N N N -12.944 -1.063 -9.801  1.852  -2.951 0.079  N1  L9Z 27 
L9Z H8  H8  H 0 1 N N N N N N -12.131 -1.614 -9.614  1.893  -2.982 -0.928 H8  L9Z 28 
L9Z H15 H15 H 0 1 N N N N N N -12.748 -0.421 -10.542 2.490  -3.617 0.488  H15 L9Z 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L9Z O16 C14 DOUB N N 1  
L9Z O15 C14 SING N N 2  
L9Z C14 C5  SING N N 3  
L9Z C5  C6  SING N N 4  
L9Z C5  C4  SING N N 5  
L9Z C6  C1  SING N N 6  
L9Z C4  C3  SING N N 7  
L9Z C1  C21 SING N N 8  
L9Z C1  O28 SING N N 9  
L9Z C1  C2  SING N N 10 
L9Z C3  C2  SING N N 11 
L9Z C3  O19 SING N N 12 
L9Z C2  O17 SING N N 13 
L9Z O15 H1  SING N N 14 
L9Z C5  H2  SING N N 15 
L9Z C6  H3  SING N N 16 
L9Z C6  H4  SING N N 17 
L9Z O28 H5  SING N N 18 
L9Z C21 H6  SING N N 19 
L9Z C21 H7  SING N N 20 
L9Z C4  H9  SING N N 21 
L9Z C4  H10 SING N N 22 
L9Z C3  H11 SING N N 23 
L9Z O19 H12 SING N N 24 
L9Z C2  H13 SING N N 25 
L9Z O17 H14 SING N N 26 
L9Z C21 N1  SING N N 27 
L9Z N1  H8  SING N N 28 
L9Z N1  H15 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L9Z InChI            InChI                1.03  "InChI=1S/C8H15NO5/c9-3-8(14)2-4(7(12)13)1-5(10)6(8)11/h4-6,10-11,14H,1-3,9H2,(H,12,13)/t4-,5+,6-,8-/m0/s1" 
L9Z InChIKey         InChI                1.03  YNLZKDMNCIPLRS-GCJQMDKQSA-N                                                                                 
L9Z SMILES_CANONICAL CACTVS               3.385 "NC[C@@]1(O)C[C@H](C[C@@H](O)[C@@H]1O)C(O)=O"                                                               
L9Z SMILES           CACTVS               3.385 "NC[C]1(O)C[CH](C[CH](O)[CH]1O)C(O)=O"                                                                      
L9Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H](C[C@@]([C@H]([C@@H]1O)O)(CN)O)C(=O)O"                                                             
L9Z SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(CC(C(C1O)O)(CN)O)C(=O)O"                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           L9Z 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{S},3~{S},4~{S},5~{R})-3-(aminomethyl)-3,4,5-tris(oxidanyl)cyclohexane-1-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L9Z "Create component" 2019-08-01 EBI  
L9Z "Initial release"  2020-04-15 RCSB 
L9Z "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            L9Z 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C21 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
