data_K1Z
#

_chem_comp.id                                   K1Z
_chem_comp.name                                 "[(2~{R},3~{R},4~{R},5~{R})-2-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] dihydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H27 N10 O11 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-16
_chem_comp.pdbx_modified_date                   2020-05-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       650.495
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K1Z
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RGE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K1Z  O3   O1   O  0  1  N  N  N  16.379   6.874  11.624  -2.203   4.900   0.389  O3   K1Z   1  
K1Z  C4   C1   C  0  1  Y  N  N  17.495   5.197   7.539   6.638  -2.207  -0.778  C4   K1Z   2  
K1Z  C5   C2   C  0  1  N  N  R  16.820   8.509   8.849   4.577   0.704  -0.012  C5   K1Z   3  
K1Z  O4   O2   O  0  1  N  N  N  18.625   7.258  15.846  -2.842   1.615   3.576  O4   K1Z   4  
K1Z  C6   C3   C  0  1  N  N  R  15.266   9.981   9.690   2.966   2.270  -0.486  C6   K1Z   5  
K1Z  N1   N1   N  0  1  Y  N  N  19.685   4.361   7.813   8.096  -3.011   0.880  N1   K1Z   6  
K1Z  C7   C4   C  0  1  N  N  N  13.881  10.085  10.281   1.978   2.745  -1.553  C7   K1Z   7  
K1Z  C8   C5   C  0  1  N  N  N  14.033  10.813  12.580  -0.255   2.411  -2.359  C8   K1Z   8  
K1Z  N2   N2   N  0  1  Y  N  N  19.149   6.522   8.734   6.784  -1.162   1.330  N2   K1Z   9  
K1Z  C9   C6   C  0  1  N  N  N  15.453  11.156  12.683  -1.478   1.628  -2.118  C9   K1Z  10  
K1Z  O5   O3   O  0  1  N  N  N  18.106   9.773  16.313  -3.337  -0.619   2.338  O5   K1Z  11  
K1Z  C10  C7   C  0  1  N  N  N  16.620  11.389  12.720  -2.454   1.005  -1.926  C10  K1Z  12  
K1Z  O6   O4   O  0  1  N  N  N  15.811  10.543  17.055  -3.100  -2.659   0.871  O6   K1Z  13  
K1Z  C11  C8   C  0  1  Y  N  N  18.033  11.564  12.739  -3.644   0.243  -1.692  C11  K1Z  14  
K1Z  C12  C9   C  0  1  Y  N  N  19.976  12.360  12.326  -5.307  -1.122  -2.004  C12  K1Z  15  
K1Z  N3   N3   N  0  1  Y  N  N  16.845   7.161   8.291   5.293  -0.459  -0.542  N3   K1Z  16  
K1Z  C13  C10  C  0  1  Y  N  N  21.112  13.068  11.890  -6.277  -2.039  -2.449  C13  K1Z  17  
K1Z  O7   O5   O  0  1  N  N  N  17.860  11.066  18.435  -1.268  -2.227   2.552  O7   K1Z  18  
K1Z  C14  C11  C  0  1  Y  N  N  22.384  11.365  12.809  -7.336  -1.856  -0.406  C14  K1Z  19  
K1Z  O8   O6   O  0  1  N  N  N  17.012   8.692  18.279  -3.651  -3.045   3.303  O8   K1Z  20  
K1Z  C15  C12  C  0  1  Y  N  N  20.194  11.168  12.994  -5.431  -0.604  -0.703  C15  K1Z  21  
K1Z  N4   N4   N  0  1  Y  N  N  16.161   5.332   7.174   5.934  -2.025  -1.921  N4   K1Z  22  
K1Z  N    N5   N  0  1  N  N  N  18.185   3.060   6.635   8.043  -4.139  -1.191  N    K1Z  23  
K1Z  C    C13  C  0  1  Y  N  N  18.441   4.178   7.319   7.607  -3.130  -0.351  C    K1Z  24  
K1Z  O    O7   O  0  1  N  N  N  15.725   8.618   9.737   3.330   0.891  -0.716  O    K1Z  25  
K1Z  C1   C14  C  0  1  Y  N  N  19.955   5.490   8.473   7.686  -2.051   1.689  C1   K1Z  26  
K1Z  C16  C15  C  0  1  N  N  R  18.746   9.390  13.958  -4.075   1.030   0.677  C16  K1Z  27  
K1Z  C17  C16  C  0  1  N  N  R  17.587   7.391  13.658  -2.869   2.842   1.467  C17  K1Z  28  
K1Z  C18  C17  C  0  1  N  N  N  16.244   7.288  12.973  -1.699   3.712   1.002  C18  K1Z  29  
K1Z  C19  C18  C  0  1  N  N  R  17.520   7.798  15.131  -2.338   1.619   2.239  C19  K1Z  30  
K1Z  C2   C19  C  0  1  Y  N  N  17.924   6.314   8.234   6.235  -1.204   0.120  C2   K1Z  31  
K1Z  C20  C20  C  0  1  N  N  R  17.653   9.314  15.021  -2.886   0.405   1.450  C20  K1Z  32  
K1Z  C21  C21  C  0  1  N  N  S  15.389  10.353   8.224   4.294   3.052  -0.596  C21  K1Z  33  
K1Z  C22  C22  C  0  1  N  N  R  16.671   9.620   7.794   5.378   1.998  -0.277  C22  K1Z  34  
K1Z  C3   C23  C  0  1  Y  N  N  15.827   6.508   7.647   5.144  -1.000  -1.785  C3   K1Z  35  
K1Z  N5   N6   N  0  1  Y  N  N  18.618  12.607  12.177  -4.202  -0.573  -2.555  N5   K1Z  36  
K1Z  N6   N7   N  0  1  N  N  N  21.060  14.236  11.243  -6.209  -2.583  -3.719  N6   K1Z  37  
K1Z  N7   N8   N  0  1  Y  N  N  22.324  12.526  12.147  -7.262  -2.370  -1.620  N7   K1Z  38  
K1Z  N8   N9   N  0  1  Y  N  N  21.384  10.615  13.277  -6.452  -0.995   0.053  N8   K1Z  39  
K1Z  N9   N10  N  0  1  Y  N  N  18.939  10.653  13.265  -4.372   0.252  -0.528  N9   K1Z  40  
K1Z  O1   O8   O  0  1  N  N  N  13.926   9.732  11.659   0.743   2.040  -1.406  O1   K1Z  41  
K1Z  O10  O9   O  0  1  N  N  N  17.799  10.488   7.809   6.118   2.377   0.885  O10  K1Z  42  
K1Z  O2   O10  O  0  1  N  N  N  18.385   8.407  13.005  -3.596   2.347   0.330  O2   K1Z  43  
K1Z  O9   O11  O  0  1  N  N  N  15.508  11.763   8.072   4.329   4.115   0.357  O9   K1Z  44  
K1Z  P    P1   P  0  1  N  N  N  17.134  10.036  17.593  -2.844  -2.148   2.236  P    K1Z  45  
K1Z  H1   H1   H  0  1  N  N  N  15.520   6.819  11.222  -1.515   5.500   0.070  H1   K1Z  46  
K1Z  H2   H2   H  0  1  N  N  N  17.757   8.686   9.397   4.396   0.582   1.056  H2   K1Z  47  
K1Z  H3   H3   H  0  1  N  N  N  18.570   7.518  16.758  -2.578   2.384   4.099  H3   K1Z  48  
K1Z  H4   H4   H  0  1  N  N  N  15.946  10.620  10.272   2.536   2.388   0.509  H4   K1Z  49  
K1Z  H5   H5   H  0  1  N  N  N  13.515  11.117  10.179   1.802   3.814  -1.434  H5   K1Z  50  
K1Z  H6   H6   H  0  1  N  N  N  13.203   9.401   9.749   2.391   2.552  -2.543  H6   K1Z  51  
K1Z  H7   H7   H  0  1  N  N  N  13.462  11.679  12.213   0.112   2.211  -3.366  H7   K1Z  52  
K1Z  H8   H8   H  0  1  N  N  N  13.646  10.509  13.564  -0.477   3.473  -2.258  H8   K1Z  53  
K1Z  H9   H9   H  0  1  N  N  N  17.344  11.863  18.476  -1.027  -1.908   3.432  H9   K1Z  54  
K1Z  H10  H10  H  0  1  N  N  N  23.378  10.982  12.989  -8.153  -2.153   0.235  H10  K1Z  55  
K1Z  H11  H11  H  0  1  N  N  N  16.108   8.401  18.248  -3.404  -3.980   3.297  H11  K1Z  56  
K1Z  H12  H12  H  0  1  N  N  N  19.011   2.497   6.594   7.678  -4.216  -2.087  H12  K1Z  57  
K1Z  H13  H13  H  0  1  N  N  N  17.456   2.550   7.091   8.713  -4.770  -0.884  H13  K1Z  58  
K1Z  H14  H14  H  0  1  N  N  N  20.964   5.581   8.847   8.109  -1.991   2.680  H14  K1Z  59  
K1Z  H15  H15  H  0  1  N  N  N  19.695   9.101  14.433  -4.955   1.098   1.316  H15  K1Z  60  
K1Z  H16  H16  H  0  1  N  N  N  18.096   6.419  13.587  -3.532   3.425   2.106  H16  K1Z  61  
K1Z  H17  H17  H  0  1  N  N  N  15.754   8.273  12.997  -1.099   3.158   0.280  H17  K1Z  62  
K1Z  H18  H18  H  0  1  N  N  N  15.624   6.556  13.511  -1.081   3.978   1.859  H18  K1Z  63  
K1Z  H19  H19  H  0  1  N  N  N  16.552   7.518  15.573  -1.248   1.614   2.243  H19  K1Z  64  
K1Z  H20  H20  H  0  1  N  N  N  16.718   9.790  14.690  -2.135   0.018   0.762  H20  K1Z  65  
K1Z  H21  H21  H  0  1  N  N  N  14.529   9.959   7.662   4.425   3.441  -1.606  H21  K1Z  66  
K1Z  H22  H22  H  0  1  N  N  N  16.525   9.170   6.801   6.046   1.868  -1.129  H22  K1Z  67  
K1Z  H23  H23  H  0  1  N  N  N  14.837   6.925   7.539   4.470  -0.632  -2.544  H23  K1Z  68  
K1Z  H24  H24  H  0  1  N  N  N  21.988  14.545  11.037  -6.884  -3.214  -4.014  H24  K1Z  69  
K1Z  H25  H25  H  0  1  N  N  N  20.550  14.122  10.390  -5.485  -2.334  -4.315  H25  K1Z  70  
K1Z  H26  H26  H  0  1  N  N  N  18.573  10.007   7.539   6.592   3.215   0.794  H26  K1Z  71  
K1Z  H27  H27  H  0  1  N  N  N  14.700  12.181   8.346   5.142   4.640   0.332  H27  K1Z  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K1Z  N    C    SING  N  N   1  
K1Z  N4   C4   SING  Y  N   2  
K1Z  N4   C3   DOUB  Y  N   3  
K1Z  C    C4   DOUB  Y  N   4  
K1Z  C    N1   SING  Y  N   5  
K1Z  C4   C2   SING  Y  N   6  
K1Z  C3   N3   SING  Y  N   7  
K1Z  C22  O10  SING  N  N   8  
K1Z  C22  C21  SING  N  N   9  
K1Z  C22  C5   SING  N  N  10  
K1Z  N1   C1   DOUB  Y  N  11  
K1Z  O9   C21  SING  N  N  12  
K1Z  C21  C6   SING  N  N  13  
K1Z  C2   N3   SING  Y  N  14  
K1Z  C2   N2   DOUB  Y  N  15  
K1Z  N3   C5   SING  N  N  16  
K1Z  C1   N2   SING  Y  N  17  
K1Z  C5   O    SING  N  N  18  
K1Z  C6   O    SING  N  N  19  
K1Z  C6   C7   SING  N  N  20  
K1Z  C7   O1   SING  N  N  21  
K1Z  N6   C13  SING  N  N  22  
K1Z  O3   C18  SING  N  N  23  
K1Z  O1   C8   SING  N  N  24  
K1Z  C13  N7   DOUB  Y  N  25  
K1Z  C13  C12  SING  Y  N  26  
K1Z  N7   C14  SING  Y  N  27  
K1Z  N5   C12  SING  Y  N  28  
K1Z  N5   C11  DOUB  Y  N  29  
K1Z  C12  C15  DOUB  Y  N  30  
K1Z  C8   C9   SING  N  N  31  
K1Z  C9   C10  TRIP  N  N  32  
K1Z  C10  C11  SING  N  N  33  
K1Z  C11  N9   SING  Y  N  34  
K1Z  C14  N8   DOUB  Y  N  35  
K1Z  C18  C17  SING  N  N  36  
K1Z  C15  N9   SING  Y  N  37  
K1Z  C15  N8   SING  Y  N  38  
K1Z  O2   C17  SING  N  N  39  
K1Z  O2   C16  SING  N  N  40  
K1Z  N9   C16  SING  N  N  41  
K1Z  C17  C19  SING  N  N  42  
K1Z  C16  C20  SING  N  N  43  
K1Z  C20  C19  SING  N  N  44  
K1Z  C20  O5   SING  N  N  45  
K1Z  C19  O4   SING  N  N  46  
K1Z  O5   P    SING  N  N  47  
K1Z  O6   P    DOUB  N  N  48  
K1Z  P    O8   SING  N  N  49  
K1Z  P    O7   SING  N  N  50  
K1Z  O3   H1   SING  N  N  51  
K1Z  C5   H2   SING  N  N  52  
K1Z  O4   H3   SING  N  N  53  
K1Z  C6   H4   SING  N  N  54  
K1Z  C7   H5   SING  N  N  55  
K1Z  C7   H6   SING  N  N  56  
K1Z  C8   H7   SING  N  N  57  
K1Z  C8   H8   SING  N  N  58  
K1Z  O7   H9   SING  N  N  59  
K1Z  C14  H10  SING  N  N  60  
K1Z  O8   H11  SING  N  N  61  
K1Z  N    H12  SING  N  N  62  
K1Z  N    H13  SING  N  N  63  
K1Z  C1   H14  SING  N  N  64  
K1Z  C16  H15  SING  N  N  65  
K1Z  C17  H16  SING  N  N  66  
K1Z  C18  H17  SING  N  N  67  
K1Z  C18  H18  SING  N  N  68  
K1Z  C19  H19  SING  N  N  69  
K1Z  C20  H20  SING  N  N  70  
K1Z  C21  H21  SING  N  N  71  
K1Z  C22  H22  SING  N  N  72  
K1Z  C3   H23  SING  N  N  73  
K1Z  N6   H24  SING  N  N  74  
K1Z  N6   H25  SING  N  N  75  
K1Z  O10  H26  SING  N  N  76  
K1Z  O9   H27  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K1Z  InChI             InChI                 1.03   "InChI=1S/C23H27N10O11P/c24-18-12-20(28-6-26-18)32(8-30-12)22-16(37)14(35)10(43-22)5-41-3-1-2-11-31-13-19(25)27-7-29-21(13)33(11)23-17(44-45(38,39)40)15(36)9(4-34)42-23/h6-10,14-17,22-23,34-37H,3-5H2,(H2,24,26,28)(H2,25,27,29)(H2,38,39,40)/t9-,10-,14-,15-,16-,17-,22-,23-/m1/s1"  
K1Z  InChIKey          InChI                 1.03   KWDXFYHXTKUVMJ-MKWZPUSRSA-N  
K1Z  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](COCC#Cc4nc5c(N)ncnc5n4[C@@H]6O[C@H](CO)[C@@H](O)[C@H]6O[P](O)(O)=O)[C@@H](O)[C@H]3O"  
K1Z  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](COCC#Cc4nc5c(N)ncnc5n4[CH]6O[CH](CO)[CH](O)[CH]6O[P](O)(O)=O)[CH](O)[CH]3O"  
K1Z  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COCC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CO)O)OP(=O)(O)O)N)O)O)N"  
K1Z  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COCC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CO)O)OP(=O)(O)O)N)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          K1Z
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{R},4~{R},5~{R})-2-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K1Z  "Create component"  2019-04-16  RCSB  
K1Z  "Initial release"   2020-05-13  RCSB  
##
