data_JVZ
#

_chem_comp.id                                   JVZ
_chem_comp.name                                 "(2~{S})-1-(benzimidazol-1-yl)-3-(2,3-dihydro-1~{H}-inden-5-yloxy)propan-2-ol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 N2 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-05
_chem_comp.pdbx_modified_date                   2019-12-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       308.374
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JVZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6R9W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JVZ  C02   C1   C  0  1  N  N  S   7.348  -46.120  89.498  -0.914  -0.377   0.141  C02   JVZ   1  
JVZ  C03   C2   C  0  1  N  N  N   6.554  -46.253  88.141   0.497  -0.511  -0.437  C03   JVZ   2  
JVZ  C05   C3   C  0  1  Y  N  N   4.467  -45.170  88.870   2.753  -0.014   0.125  C05   JVZ   3  
JVZ  C06   C4   C  0  1  Y  N  N   4.129  -46.267  89.733   3.726   0.486   0.976  C06   JVZ   4  
JVZ  C07   C5   C  0  1  Y  N  N   3.020  -46.214  90.615   5.060   0.439   0.611  C07   JVZ   5  
JVZ  C08   C6   C  0  1  N  N  N   2.411  -47.252  91.619   6.295   0.911   1.348  C08   JVZ   6  
JVZ  C09   C7   C  0  1  N  N  N   0.987  -46.746  91.979   7.476   0.203   0.652  C09   JVZ   7  
JVZ  C10   C8   C  0  1  N  N  N   1.109  -45.234  91.714   6.926  -0.040  -0.770  C10   JVZ   8  
JVZ  C11   C9   C  0  1  Y  N  N   2.249  -45.053  90.660   5.423  -0.108  -0.607  C11   JVZ   9  
JVZ  C12   C10  C  0  1  Y  N  N   2.605  -43.977  89.815   4.450  -0.608  -1.457  C12   JVZ  10  
JVZ  C13   C11  C  0  1  Y  N  N   3.700  -44.027  88.939   3.119  -0.562  -1.095  C13   JVZ  11  
JVZ  C14   C12  C  0  1  N  N  N   8.439  -45.020  89.516  -1.914  -1.064  -0.790  C14   JVZ  12  
JVZ  C16   C13  C  0  1  Y  N  N   9.490  -44.754  87.111  -4.161  -0.009  -0.255  C16   JVZ  13  
JVZ  C17   C14  C  0  1  Y  N  N   8.533  -44.097  86.370  -4.165   1.239  -0.862  C17   JVZ  14  
JVZ  C18   C15  C  0  1  Y  N  N   8.783  -43.801  85.044  -5.271   2.054  -0.742  C18   JVZ  15  
JVZ  C19   C16  C  0  1  Y  N  N  10.030  -44.162  84.433  -6.379   1.634  -0.021  C19   JVZ  16  
JVZ  C20   C17  C  0  1  Y  N  N  10.989  -44.814  85.171  -6.393   0.408   0.584  C20   JVZ  17  
JVZ  C21   C18  C  0  1  Y  N  N  10.748  -45.125  86.532  -5.281  -0.431   0.481  C21   JVZ  18  
JVZ  C23   C19  C  0  1  Y  N  N  10.756  -45.781  88.635  -3.809  -2.029   0.565  C23   JVZ  19  
JVZ  N15   N1   N  0  1  Y  N  N   9.524  -45.191  88.470  -3.246  -1.040  -0.180  N15   JVZ  20  
JVZ  N22   N2   N  0  1  Y  N  N  11.514  -45.769  87.530  -4.998  -1.672   0.955  N22   JVZ  21  
JVZ  O01   O1   O  0  1  N  N  N   8.015  -47.299  89.700  -1.249   1.007   0.262  O01   JVZ  22  
JVZ  O04   O2   O  0  1  N  N  N   5.560  -45.225  87.998   1.444   0.028   0.488  O04   JVZ  23  
JVZ  H021  H1   H  0  0  N  N  N   6.628  -45.921  90.306  -0.950  -0.847   1.124  H021  JVZ  24  
JVZ  H031  H2   H  0  0  N  N  N   6.057  -47.234  88.115   0.719  -1.564  -0.612  H031  JVZ  25  
JVZ  H032  H3   H  0  0  N  N  N   7.265  -46.179  87.305   0.557   0.035  -1.378  H032  JVZ  26  
JVZ  H061  H4   H  0  0  N  N  N   4.738  -47.159  89.710   3.443   0.913   1.927  H061  JVZ  27  
JVZ  H081  H5   H  0  0  N  N  N   2.352  -48.245  91.148   6.398   1.993   1.260  H081  JVZ  28  
JVZ  H082  H6   H  0  0  N  N  N   3.032  -47.312  92.525   6.244   0.620   2.397  H082  JVZ  29  
JVZ  H091  H7   H  0  0  N  N  N   0.224  -47.205  91.333   8.353   0.849   0.623  H091  JVZ  30  
JVZ  H092  H8   H  0  0  N  N  N   0.745  -46.949  93.033   7.708  -0.740   1.147  H092  JVZ  31  
JVZ  H101  H9   H  0  0  N  N  N   1.365  -44.706  92.644   7.199   0.786  -1.427  H101  JVZ  32  
JVZ  H102  H10  H  0  0  N  N  N   0.161  -44.841  91.318   7.308  -0.980  -1.167  H102  JVZ  33  
JVZ  H121  H11  H  0  0  N  N  N   2.008  -43.077  89.845   4.735  -1.034  -2.408  H121  JVZ  34  
JVZ  H131  H12  H  0  0  N  N  N   3.941  -43.174  88.322   2.364  -0.952  -1.762  H131  JVZ  35  
JVZ  H141  H13  H  0  0  N  N  N   8.915  -45.024  90.508  -1.942  -0.538  -1.745  H141  JVZ  36  
JVZ  H142  H14  H  0  0  N  N  N   7.950  -44.049  89.348  -1.608  -2.097  -0.953  H142  JVZ  37  
JVZ  H171  H15  H  0  0  N  N  N   7.594  -43.815  86.822  -3.305   1.571  -1.424  H171  JVZ  38  
JVZ  H181  H16  H  0  0  N  N  N   8.031  -43.292  84.460  -5.275   3.025  -1.214  H181  JVZ  39  
JVZ  H191  H17  H  0  0  N  N  N  10.215  -43.922  83.396  -7.238   2.282   0.065  H191  JVZ  40  
JVZ  H201  H18  H  0  0  N  N  N  11.927  -45.090  84.713  -7.261   0.092   1.144  H201  JVZ  41  
JVZ  H231  H19  H  0  0  N  N  N  11.082  -46.214  89.569  -3.337  -2.970   0.803  H231  JVZ  42  
JVZ  H011  H20  H  0  0  N  N  N   8.505  -47.251  90.513  -1.237   1.490  -0.576  H011  JVZ  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JVZ  C19  C18   DOUB  Y  N   1  
JVZ  C19  C20   SING  Y  N   2  
JVZ  C18  C17   SING  Y  N   3  
JVZ  C20  C21   DOUB  Y  N   4  
JVZ  C17  C16   DOUB  Y  N   5  
JVZ  C21  C16   SING  Y  N   6  
JVZ  C21  N22   SING  Y  N   7  
JVZ  C16  N15   SING  Y  N   8  
JVZ  N22  C23   DOUB  Y  N   9  
JVZ  O04  C03   SING  N  N  10  
JVZ  O04  C05   SING  N  N  11  
JVZ  C03  C02   SING  N  N  12  
JVZ  N15  C23   SING  Y  N  13  
JVZ  N15  C14   SING  N  N  14  
JVZ  C05  C13   DOUB  Y  N  15  
JVZ  C05  C06   SING  Y  N  16  
JVZ  C13  C12   SING  Y  N  17  
JVZ  C02  C14   SING  N  N  18  
JVZ  C02  O01   SING  N  N  19  
JVZ  C06  C07   DOUB  Y  N  20  
JVZ  C12  C11   DOUB  Y  N  21  
JVZ  C07  C11   SING  Y  N  22  
JVZ  C07  C08   SING  N  N  23  
JVZ  C11  C10   SING  N  N  24  
JVZ  C08  C09   SING  N  N  25  
JVZ  C10  C09   SING  N  N  26  
JVZ  C02  H021  SING  N  N  27  
JVZ  C03  H031  SING  N  N  28  
JVZ  C03  H032  SING  N  N  29  
JVZ  C06  H061  SING  N  N  30  
JVZ  C08  H081  SING  N  N  31  
JVZ  C08  H082  SING  N  N  32  
JVZ  C09  H091  SING  N  N  33  
JVZ  C09  H092  SING  N  N  34  
JVZ  C10  H101  SING  N  N  35  
JVZ  C10  H102  SING  N  N  36  
JVZ  C12  H121  SING  N  N  37  
JVZ  C13  H131  SING  N  N  38  
JVZ  C14  H141  SING  N  N  39  
JVZ  C14  H142  SING  N  N  40  
JVZ  C17  H171  SING  N  N  41  
JVZ  C18  H181  SING  N  N  42  
JVZ  C19  H191  SING  N  N  43  
JVZ  C20  H201  SING  N  N  44  
JVZ  C23  H231  SING  N  N  45  
JVZ  O01  H011  SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JVZ  InChI             InChI                 1.03   "InChI=1S/C19H20N2O2/c22-16(11-21-13-20-18-6-1-2-7-19(18)21)12-23-17-9-8-14-4-3-5-15(14)10-17/h1-2,6-10,13,16,22H,3-5,11-12H2/t16-/m0/s1"  
JVZ  InChIKey          InChI                 1.03   OZCCXUVVMPVMIB-INIZCTEOSA-N  
JVZ  SMILES_CANONICAL  CACTVS                3.385  "O[C@H](COc1ccc2CCCc2c1)Cn3cnc4ccccc34"  
JVZ  SMILES            CACTVS                3.385  "O[CH](COc1ccc2CCCc2c1)Cn3cnc4ccccc34"  
JVZ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)ncn2C[C@@H](COc3ccc4c(c3)CCC4)O"  
JVZ  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)ncn2CC(COc3ccc4c(c3)CCC4)O"  
#
_pdbx_chem_comp_identifier.comp_id          JVZ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-1-(benzimidazol-1-yl)-3-(2,3-dihydro-1~{H}-inden-5-yloxy)propan-2-ol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JVZ  "Create component"  2019-04-05  RCSB  
JVZ  "Initial release"   2019-12-25  RCSB  
##
