data_DUZ
# 
_chem_comp.id                                    DUZ 
_chem_comp.name                                  
;5-(benzylcarbamoyl)-2'-deoxyuridine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C17 H20 N3 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               DU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-11-07 
_chem_comp.pdbx_modified_date                    2012-11-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        441.329 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DUZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HQX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DUZ P      P      P 0 1 N N N 19.414 -16.869 18.595 6.299  1.850  0.186  P      DUZ 1  
DUZ N1     N1     N 0 1 N N N 18.981 -13.807 14.073 0.270  -1.080 0.141  N1     DUZ 2  
DUZ C2     C2     C 0 1 N N N 19.001 -12.921 12.956 0.260  -0.655 -1.132 C2     DUZ 3  
DUZ O2     O2     O 0 1 N N N 18.866 -13.364 11.797 1.300  -0.656 -1.761 O2     DUZ 4  
DUZ N3     N3     N 0 1 N N N 19.168 -11.600 13.111 -0.863 -0.228 -1.734 N3     DUZ 5  
DUZ C4     C4     C 0 1 N N N 19.300 -11.071 14.333 -2.035 -0.214 -1.064 C4     DUZ 6  
DUZ O4     O4     O 0 1 N N N 19.444 -9.837  14.462 -3.056 0.170  -1.604 O4     DUZ 7  
DUZ C5     C5     C 0 1 N N N 19.291 -11.977 15.514 -2.051 -0.675 0.333  C5     DUZ 8  
DUZ C6     C6     C 0 1 N N N 19.097 -13.334 15.317 -0.862 -1.101 0.891  C6     DUZ 9  
DUZ "C1'"  "C1'"  C 0 1 N N R 18.759 -15.241 13.877 1.530  -1.538 0.733  "C1'"  DUZ 10 
DUZ "C2'"  "C2'"  C 0 1 N N N 19.858 -16.176 14.354 2.020  -2.805 0.006  "C2'"  DUZ 11 
DUZ C21    C21    C 0 1 N N N 19.399 -11.496 16.924 -3.298 -0.683 1.113  C21    DUZ 12 
DUZ O22    O22    O 0 1 N N N 19.442 -12.346 17.800 -3.314 -1.163 2.231  O22    DUZ 13 
DUZ N23    N23    N 0 1 N N N 19.392 -10.190 17.196 -4.424 -0.158 0.589  N23    DUZ 14 
DUZ C24    C24    C 0 1 N N N 19.420 -9.578  18.521 -5.637 -0.064 1.405  C24    DUZ 15 
DUZ C25    C25    C 0 1 Y N N 17.974 -9.237  18.849 -6.744 0.554  0.590  C25    DUZ 16 
DUZ C26    C26    C 0 1 Y N N 17.666 -8.381  19.901 -7.586 -0.250 -0.155 C26    DUZ 17 
DUZ C27    C27    C 0 1 Y N N 16.335 -8.063  20.182 -8.601 0.317  -0.902 C27    DUZ 18 
DUZ C28    C28    C 0 1 Y N N 15.287 -8.595  19.434 -8.774 1.688  -0.905 C28    DUZ 19 
DUZ C29    C29    C 0 1 Y N N 15.589 -9.455  18.383 -7.932 2.492  -0.160 C29    DUZ 20 
DUZ "C3'"  "C3'"  C 0 1 N N S 19.071 -17.401 14.776 3.420  -2.417 -0.531 "C3'"  DUZ 21 
DUZ "O3'"  "O3'"  O 0 1 N N N 18.750 -18.198 13.636 4.345  -3.494 -0.367 "O3'"  DUZ 22 
DUZ C30    C30    C 0 1 Y N N 16.920 -9.771  18.092 -6.921 1.925  0.592  C30    DUZ 23 
DUZ "C4'"  "C4'"  C 0 1 N N R 17.724 -16.874 15.232 3.797  -1.221 0.380  "C4'"  DUZ 24 
DUZ "O4'"  "O4'"  O 0 1 N N N 17.589 -15.588 14.630 2.542  -0.531 0.566  "O4'"  DUZ 25 
DUZ "C5'"  "C5'"  C 0 1 N N N 17.582 -16.759 16.743 4.813  -0.314 -0.316 "C5'"  DUZ 26 
DUZ "O5'"  "O5'"  O 0 1 N N N 18.758 -16.175 17.299 5.231  0.713  0.585  "O5'"  DUZ 27 
DUZ OP1    OP1    O 0 1 N N N 19.264 -18.365 18.419 7.542  1.210  -0.299 OP1    DUZ 28 
DUZ OP2    OP2    O 0 1 N N N 20.745 -16.239 18.902 5.685  2.779  -0.977 OP2    DUZ 29 
DUZ OP3    OP3    O 0 1 N Y N 18.354 -16.473 19.719 6.628  2.754  1.477  OP3    DUZ 30 
DUZ HN3    HN3    H 0 1 N N N 19.194 -11.005 12.307 -0.832 0.072  -2.656 HN3    DUZ 31 
DUZ H6     H6     H 0 1 N N N 19.040 -14.004 16.162 -0.832 -1.447 1.914  H6     DUZ 32 
DUZ "H1'"  "H1'"  H 0 1 N N N 18.579 -15.434 12.809 1.386  -1.750 1.792  "H1'"  DUZ 33 
DUZ "H2'"  "H2'"  H 0 1 N N N 20.561 -16.413 13.542 2.097  -3.639 0.704  "H2'"  DUZ 34 
DUZ "H2'A" "H2'A" H 0 0 N N N 20.410 -15.744 15.202 1.352  -3.056 -0.817 "H2'A" DUZ 35 
DUZ HN23   HN23   H 0 0 N N N 19.365 -9.568  16.414 -4.431 0.157  -0.328 HN23   DUZ 36 
DUZ H24    H24    H 0 1 N N N 19.825 -10.284 19.261 -5.936 -1.061 1.727  H24    DUZ 37 
DUZ H24A   H24A   H 0 0 N N N 20.036 -8.666  18.509 -5.439 0.556  2.279  H24A   DUZ 38 
DUZ H26    H26    H 0 1 N N N 18.458 -7.961  20.503 -7.450 -1.322 -0.153 H26    DUZ 39 
DUZ H27    H27    H 0 1 N N N 16.114 -7.390  20.997 -9.258 -0.312 -1.485 H27    DUZ 40 
DUZ H28    H28    H 0 1 N N N 14.262 -8.345  19.665 -9.567 2.131  -1.489 H28    DUZ 41 
DUZ H29    H29    H 0 1 N N N 14.793 -9.880  17.790 -8.068 3.564  -0.162 H29    DUZ 42 
DUZ "H3'"  "H3'"  H 0 1 N N N 19.582 -17.963 15.571 3.364  -2.109 -1.575 "H3'"  DUZ 43 
DUZ "HO3'" "HO3'" H 0 0 N N N 18.257 -18.962 13.912 4.102  -4.298 -0.847 "HO3'" DUZ 44 
DUZ H30    H30    H 0 1 N N N 17.140 -10.437 17.271 -6.266 2.553  1.178  H30    DUZ 45 
DUZ "H4'"  "H4'"  H 0 1 N N N 16.938 -17.546 14.857 4.189  -1.573 1.334  "H4'"  DUZ 46 
DUZ "H5'"  "H5'"  H 0 1 N N N 16.714 -16.127 16.980 5.678  -0.903 -0.621 "H5'"  DUZ 47 
DUZ "H5'A" "H5'A" H 0 0 N N N 17.434 -17.761 17.173 4.354  0.139  -1.195 "H5'A" DUZ 48 
DUZ HOP2   HOP2   H 0 0 N N N 21.410 -16.915 18.957 4.867  3.230  -0.729 HOP2   DUZ 49 
DUZ HOP3   HOP3   H 0 0 N Y N 17.890 -17.251 20.006 7.267  3.461  1.309  HOP3   DUZ 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DUZ "O5'" P      SING N N 1  
DUZ OP1   P      DOUB N N 2  
DUZ P     OP2    SING N N 3  
DUZ P     OP3    SING N N 4  
DUZ C2    N1     SING N N 5  
DUZ "C1'" N1     SING N N 6  
DUZ N1    C6     SING N N 7  
DUZ O2    C2     DOUB N N 8  
DUZ C2    N3     SING N N 9  
DUZ N3    C4     SING N N 10 
DUZ N3    HN3    SING N N 11 
DUZ C4    O4     DOUB N N 12 
DUZ C4    C5     SING N N 13 
DUZ C6    C5     DOUB N N 14 
DUZ C5    C21    SING N N 15 
DUZ C6    H6     SING N N 16 
DUZ "C1'" "C2'"  SING N N 17 
DUZ "C1'" "O4'"  SING N N 18 
DUZ "C1'" "H1'"  SING N N 19 
DUZ "C2'" "C3'"  SING N N 20 
DUZ "C2'" "H2'"  SING N N 21 
DUZ "C2'" "H2'A" SING N N 22 
DUZ C21   N23    SING N N 23 
DUZ C21   O22    DOUB N N 24 
DUZ N23   C24    SING N N 25 
DUZ N23   HN23   SING N N 26 
DUZ C24   C25    SING N N 27 
DUZ C24   H24    SING N N 28 
DUZ C24   H24A   SING N N 29 
DUZ C30   C25    DOUB Y N 30 
DUZ C25   C26    SING Y N 31 
DUZ C26   C27    DOUB Y N 32 
DUZ C26   H26    SING N N 33 
DUZ C28   C27    SING Y N 34 
DUZ C27   H27    SING N N 35 
DUZ C29   C28    DOUB Y N 36 
DUZ C28   H28    SING N N 37 
DUZ C30   C29    SING Y N 38 
DUZ C29   H29    SING N N 39 
DUZ "O3'" "C3'"  SING N N 40 
DUZ "C3'" "C4'"  SING N N 41 
DUZ "C3'" "H3'"  SING N N 42 
DUZ "O3'" "HO3'" SING N N 43 
DUZ C30   H30    SING N N 44 
DUZ "O4'" "C4'"  SING N N 45 
DUZ "C4'" "C5'"  SING N N 46 
DUZ "C4'" "H4'"  SING N N 47 
DUZ "C5'" "O5'"  SING N N 48 
DUZ "C5'" "H5'"  SING N N 49 
DUZ "C5'" "H5'A" SING N N 50 
DUZ OP2   HOP2   SING N N 51 
DUZ OP3   HOP3   SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DUZ SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(N2C(=O)NC(=O)C(C(=O)NCc1ccccc1)=C2)CC3O"                                                                                                                                        
DUZ InChI            InChI                1.03  "InChI=1S/C17H20N3O9P/c21-12-6-14(29-13(12)9-28-30(25,26)27)20-8-11(16(23)19-17(20)24)15(22)18-7-10-4-2-1-3-5-10/h1-5,8,12-14,21H,6-7,9H2,(H,18,22)(H,19,23,24)(H2,25,26,27)/t12-,13+,14+/m0/s1" 
DUZ InChIKey         InChI                1.03  RDNHEZYEIYMTCG-BFHYXJOUSA-N                                                                                                                                                                      
DUZ SMILES_CANONICAL CACTVS               3.370 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(C(=O)NCc3ccccc3)C(=O)NC2=O"                                                                                                                          
DUZ SMILES           CACTVS               3.370 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C(=O)NCc3ccccc3)C(=O)NC2=O"                                                                                                                               
DUZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)C2=CN(C(=O)NC2=O)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O"                                                                                                                         
DUZ SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)C2=CN(C(=O)NC2=O)C3CC(C(O3)COP(=O)(O)O)O"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DUZ "SYSTEMATIC NAME" ACDLabs              12.01 
;5-(benzylcarbamoyl)-2'-deoxyuridine 5'-(dihydrogen phosphate)
;
DUZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-[2,4-bis(oxidanylidene)-5-[(phenylmethyl)carbamoyl]pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DUZ "Create component" 2012-11-07 RCSB 
DUZ "Initial release"  2012-11-16 RCSB 
# 
