data_AZZ
#

_chem_comp.id                                   AZZ
_chem_comp.name                                 "3'-azido-3'-deoxythymidine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C10 H13 N5 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Azidothymidine; Zidovudine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-11-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       267.241
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AZZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3B9L
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AZZ  "O5'"   "O5'"   O   0  1  N  N  N  35.524  2.484  18.430   2.898   3.324   0.013  "O5'"   AZZ   1  
AZZ  "C5'"   "C5'"   C   0  1  N  N  N  35.628  2.473  17.017   2.924   1.994  -0.508  "C5'"   AZZ   2  
AZZ  "C4'"   "C4'"   C   0  1  N  N  S  34.662  1.459  16.443   2.232   1.048   0.475  "C4'"   AZZ   3  
AZZ  "O4'"   "O4'"   O   0  1  N  N  N  33.310  1.849  16.765   0.823   1.350   0.565  "O4'"   AZZ   4  
AZZ  "C3'"   "C3'"   C   0  1  N  N  S  34.770  1.446  14.915   2.257  -0.407  -0.059  "C3'"   AZZ   5  
AZZ  "N3'"   "N3'"   N   0  1  N  N  N  35.796  0.495  14.451   3.499  -1.083   0.322  "N3'"   AZZ   6  
AZZ  "N4'"   "N4'"   N   1  1  N  N  N  36.020  0.377  13.345   3.715  -2.119  -0.057  "N4'"   AZZ   7  
AZZ  "N5'"   "N5'"   N  -1  1  N  N  N  36.254  0.269  12.246   3.930  -3.155  -0.436  "N5'"   AZZ   8  
AZZ  "C2'"   "C2'"   C   0  1  N  N  N  33.328  1.114  14.453   1.041  -1.038   0.663  "C2'"   AZZ   9  
AZZ  "C1'"   "C1'"   C   0  1  N  N  R  32.438  1.417  15.698   0.172   0.169   1.065  "C1'"   AZZ  10  
AZZ  N1      N1      N   0  1  N  N  N  31.435  2.521  15.454  -1.160   0.045   0.469  N1      AZZ  11  
AZZ  C2      C2      C   0  1  N  N  N  30.669  2.985  16.510  -1.297   0.073  -0.870  C2      AZZ  12  
AZZ  O2      O2      O   0  1  N  N  N  30.798  2.505  17.630  -0.311   0.201  -1.570  O2      AZZ  13  
AZZ  N3      N3      N   0  1  N  N  N  29.755  3.991  16.316  -2.509  -0.039  -1.444  N3      AZZ  14  
AZZ  C4      C4      C   0  1  N  N  N  29.574  4.562  15.080  -3.612  -0.182  -0.681  C4      AZZ  15  
AZZ  O4      O4      O   0  1  N  N  N  28.752  5.459  14.937  -4.709  -0.284  -1.200  O4      AZZ  16  
AZZ  C5      C5      C   0  1  N  N  N  30.357  4.100  13.963  -3.482  -0.213   0.728  C5      AZZ  17  
AZZ  C5A     C5A     C   0  1  N  N  N  30.188  4.706  12.589  -4.699  -0.372   1.603  C5A     AZZ  18  
AZZ  C6      C6      C   0  1  N  N  N  31.268  3.092  14.171  -2.254  -0.104   1.278  C6      AZZ  19  
AZZ  "HO5'"  "HO5'"  H   0  0  N  N  N  36.131  3.121  18.788   3.320   3.979  -0.560  "HO5'"  AZZ  20  
AZZ  "H5'"   "H5'"   H   0  1  N  N  N  35.386  3.472  16.625   2.403   1.968  -1.465  "H5'"   AZZ  21  
AZZ  "H5'A"  "H5'A"  H   0  0  N  N  N  36.655  2.204  16.728   3.958   1.679  -0.649  "H5'A"  AZZ  22  
AZZ  "H4'"   "H4'"   H   0  1  N  N  N  34.888  0.458  16.840   2.701   1.107   1.457  "H4'"   AZZ  23  
AZZ  "H3'"   "H3'"   H   0  1  N  N  N  35.024  2.459  14.569   2.121  -0.427  -1.140  "H3'"   AZZ  24  
AZZ  "H2'"   "H2'"   H   0  1  N  N  N  33.036  1.749  13.603   0.493  -1.694  -0.014  "H2'"   AZZ  25  
AZZ  "H2'A"  "H2'A"  H   0  0  N  N  N  33.246  0.055  14.165   1.365  -1.586   1.548  "H2'A"  AZZ  26  
AZZ  "H1'"   "H1'"   H   0  1  N  N  N  31.907  0.498  15.986   0.091   0.223   2.151  "H1'"   AZZ  27  
AZZ  HN3     HN3     H   0  1  N  N  N  29.210  4.314  17.090  -2.589  -0.017  -2.410  HN3     AZZ  28  
AZZ  H5A     H5A     H   0  1  N  N  N  30.875  4.215  11.884  -5.589  -0.447   0.979  H5A     AZZ  29  
AZZ  H5AA    H5AA    H   0  0  N  N  N  29.151  4.563  12.250  -4.599  -1.276   2.204  H5AA    AZZ  30  
AZZ  H5AB    H5AB    H   0  0  N  N  N  30.415  5.781  12.632  -4.789   0.493   2.260  H5AB    AZZ  31  
AZZ  H6      H6      H   0  1  N  N  N  31.863  2.732  13.345  -2.135  -0.130   2.351  H6      AZZ  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AZZ  "O5'"  "C5'"   SING  N  N   1  
AZZ  "C5'"  "C4'"   SING  N  N   2  
AZZ  "C4'"  "O4'"   SING  N  N   3  
AZZ  "C4'"  "C3'"   SING  N  N   4  
AZZ  "O4'"  "C1'"   SING  N  N   5  
AZZ  "C3'"  "N3'"   SING  N  N   6  
AZZ  "C3'"  "C2'"   SING  N  N   7  
AZZ  "N3'"  "N4'"   DOUB  N  N   8  
AZZ  "N4'"  "N5'"   DOUB  N  N   9  
AZZ  "C2'"  "C1'"   SING  N  N  10  
AZZ  "C1'"  N1      SING  N  N  11  
AZZ  N1     C2      SING  N  N  12  
AZZ  N1     C6      SING  N  N  13  
AZZ  C2     O2      DOUB  N  N  14  
AZZ  C2     N3      SING  N  N  15  
AZZ  N3     C4      SING  N  N  16  
AZZ  C4     O4      DOUB  N  N  17  
AZZ  C4     C5      SING  N  N  18  
AZZ  C5     C5A     SING  N  N  19  
AZZ  C5     C6      DOUB  N  N  20  
AZZ  "O5'"  "HO5'"  SING  N  N  21  
AZZ  "C5'"  "H5'"   SING  N  N  22  
AZZ  "C5'"  "H5'A"  SING  N  N  23  
AZZ  "C4'"  "H4'"   SING  N  N  24  
AZZ  "C3'"  "H3'"   SING  N  N  25  
AZZ  "C2'"  "H2'"   SING  N  N  26  
AZZ  "C2'"  "H2'A"  SING  N  N  27  
AZZ  "C1'"  "H1'"   SING  N  N  28  
AZZ  N3     HN3     SING  N  N  29  
AZZ  C5A    H5A     SING  N  N  30  
AZZ  C5A    H5AA    SING  N  N  31  
AZZ  C5A    H5AB    SING  N  N  32  
AZZ  C6     H6      SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AZZ  SMILES            ACDLabs               12.01  "O=C1NC(=O)N(C=C1C)C2OC(C(\N=[N+]=[N-])C2)CO"  
AZZ  InChI             InChI                 1.03   "InChI=1S/C10H13N5O4/c1-5-3-15(10(18)12-9(5)17)8-2-6(13-14-11)7(4-16)19-8/h3,6-8,16H,2,4H2,1H3,(H,12,17,18)/t6-,7+,8+/m0/s1"  
AZZ  InChIKey          InChI                 1.03   HBOMLICNUCNMMY-XLPZGREQSA-N  
AZZ  SMILES_CANONICAL  CACTVS                3.370  "CC1=CN([C@H]2C[C@H](N=[N+]=[N-])[C@@H](CO)O2)C(=O)NC1=O"  
AZZ  SMILES            CACTVS                3.370  "CC1=CN([CH]2C[CH](N=[N+]=[N-])[CH](CO)O2)C(=O)NC1=O"  
AZZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)N=[N+]=[N-]"  
AZZ  SMILES            "OpenEye OEToolkits"  1.7.6  "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)N=[N+]=[N-]"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AZZ  "SYSTEMATIC NAME"  ACDLabs               12.01  "3'-azido-3'-deoxythymidine"  
AZZ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AZZ  "Create component"   2007-11-14  PDBJ  
AZZ  "Modify descriptor"  2011-06-04  RCSB  
AZZ  "Modify synonyms"    2012-07-12  RCSB  
AZZ  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AZZ  Azidothymidine  ?  ?  
2  AZZ  Zidovudine      ?  ?  
##
