data_A9Z
# 
_chem_comp.id                                    A9Z 
_chem_comp.name                                  
;2'-deoxy-2'-(4-ethyl-1H-1,2,3-triazol-1-yl)adenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C14 H19 N8 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-01-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        426.324 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A9Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4II9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A9Z OP1   OP1 O 0 1 N N N N N N 15.569 19.022 21.672 -6.412 0.922  -0.298 OP1 A9Z 1  
A9Z P     P   P 0 1 N N N N N N 15.200 18.097 22.884 -5.680 -0.295 0.119  P   A9Z 2  
A9Z OP2   OP2 O 0 1 N N N N N N 16.441 17.745 23.649 -5.644 -1.344 -1.102 OP2 A9Z 3  
A9Z "O5'" O5* O 0 1 N N N N N N 14.171 16.862 22.182 -4.175 0.098  0.533  O5* A9Z 4  
A9Z "C5'" C5* C 0 1 N N N N N N 14.474 16.443 20.875 -3.289 0.806  -0.336 C5* A9Z 5  
A9Z "C4'" C4* C 0 1 N N R N N N 13.808 15.090 20.806 -1.946 1.016  0.366  C4* A9Z 6  
A9Z "C3'" C3* C 0 1 N N S N N N 12.280 15.094 20.655 -1.019 1.871  -0.520 C3* A9Z 7  
A9Z "O3'" O3* O 0 1 N N N N N N 12.045 14.296 19.506 -0.652 3.075  0.156  O3* A9Z 8  
A9Z "C2'" C2* C 0 1 N N R N N N 11.727 14.460 21.959 0.224  0.975  -0.744 C2* A9Z 9  
A9Z N1T   N1T N 0 1 Y N N N N N 10.529 13.800 21.790 1.457  1.762  -0.662 N1T A9Z 10 
A9Z C5T   C5T C 0 1 Y N N N N N 10.112 12.575 21.387 2.118  2.084  0.474  C5T A9Z 11 
A9Z C4T   C4T C 0 1 Y N N N N N 8.668  12.578 21.347 3.193  2.812  0.092  C4T A9Z 12 
A9Z C6T   C6T C 0 1 N N N N N N 7.689  11.422 21.014 4.245  3.407  0.991  C6T A9Z 13 
A9Z C7T   C7T C 0 1 N N N N N N 7.264  11.094 22.414 5.628  2.929  0.544  C7T A9Z 14 
A9Z N3T   N3T N 0 1 Y N N N N N 8.316  13.846 21.722 3.138  2.898  -1.242 N3T A9Z 15 
A9Z N2T   N2T N 0 1 Y N N N N N 9.407  14.631 22.006 2.101  2.262  -1.658 N2T A9Z 16 
A9Z "C1'" C1* C 0 1 N N R N N N 12.898 13.480 22.231 0.124  -0.021 0.438  C1* A9Z 17 
A9Z "O4'" O4* O 0 1 N N N N N N 14.094 14.303 22.009 -1.296 -0.251 0.566  O4* A9Z 18 
A9Z N9    N9  N 0 1 Y N N N N N 12.913 13.136 23.620 0.822  -1.270 0.121  N9  A9Z 19 
A9Z C4    C4  C 0 1 Y N N N N N 12.617 11.933 24.169 2.162  -1.515 0.285  C4  A9Z 20 
A9Z C5    C5  C 0 1 Y N N N N N 12.819 12.053 25.604 2.370  -2.835 -0.150 C5  A9Z 21 
A9Z N7    N7  N 0 1 Y N N N N N 13.278 13.357 25.806 1.168  -3.318 -0.548 N7  A9Z 22 
A9Z C8    C8  C 0 1 Y N N N N N 13.333 13.974 24.620 0.258  -2.403 -0.385 C8  A9Z 23 
A9Z N3    N3  N 0 1 Y N N N N N 12.220 10.783 23.605 3.197  -0.811 0.731  N3  A9Z 24 
A9Z C2    C2  C 0 1 Y N N N N N 11.929 9.742  24.431 4.402  -1.339 0.767  C2  A9Z 25 
A9Z N1    N1  N 0 1 Y N N N N N 12.075 9.709  25.748 4.646  -2.575 0.370  N1  A9Z 26 
A9Z C6    C6  C 0 1 Y N N N N N 12.542 10.866 26.401 3.674  -3.355 -0.091 C6  A9Z 27 
A9Z N6    N6  N 0 1 N N N N N N 12.715 10.922 27.705 3.940  -4.648 -0.505 N6  A9Z 28 
A9Z OP3   OP3 O 0 1 N Y N N N N 13.925 19.003 23.613 -6.426 -0.965 1.379  OP3 A9Z 29 
A9Z H1    H1  H 0 1 N N N N N N 17.193 18.156 23.240 -5.179 -2.167 -0.900 H1  A9Z 30 
A9Z H2    H2  H 0 1 N N N N N N 15.561 16.360 20.726 -3.136 0.229  -1.248 H2  A9Z 31 
A9Z H3    H3  H 0 1 N N N N N N 14.053 17.132 20.128 -3.722 1.775  -0.587 H3  A9Z 32 
A9Z H4    H4  H 0 1 N N N N N N 14.223 14.556 19.938 -2.102 1.508  1.326  H4  A9Z 33 
A9Z H5    H5  H 0 1 N N N N N N 11.904 16.121 20.538 -1.502 2.098  -1.470 H5  A9Z 34 
A9Z H6    H6  H 0 1 N N N N N N 11.111 14.246 19.340 -1.401 3.648  0.374  H6  A9Z 35 
A9Z H7    H7  H 0 1 N N N N N N 11.682 15.219 22.754 0.160  0.454  -1.699 H7  A9Z 36 
A9Z H8    H8  H 0 1 N N N N N N 10.750 11.740 21.138 1.842  1.814  1.483  H8  A9Z 37 
A9Z H9    H9  H 0 1 N N N N N N 6.846  11.757 20.391 4.200  4.494  0.933  H9  A9Z 38 
A9Z H10   H10 H 0 1 N N N N N N 8.194  10.577 20.524 4.066  3.090  2.019  H10 A9Z 39 
A9Z H11   H11 H 0 1 N N N N N N 6.541  10.265 22.394 5.807  3.246  -0.484 H11 A9Z 40 
A9Z H12   H12 H 0 1 N N N N N N 8.144  10.798 23.004 6.390  3.359  1.195  H12 A9Z 41 
A9Z H13   H13 H 0 1 N N N N N N 6.796  11.978 22.872 5.673  1.841  0.602  H13 A9Z 42 
A9Z H14   H14 H 0 1 N N N N N N 12.854 12.605 21.565 0.527  0.422  1.349  H14 A9Z 43 
A9Z H15   H15 H 0 1 N N N N N N 13.663 14.992 24.471 -0.790 -2.523 -0.618 H15 A9Z 44 
A9Z H16   H16 H 0 1 N N N N N N 11.538 8.849  23.965 5.221  -0.740 1.135  H16 A9Z 45 
A9Z H17   H17 H 0 1 N N N N N N 12.467 10.043 28.113 3.221  -5.208 -0.839 H17 A9Z 46 
A9Z H18   H18 H 0 1 N N N N N N 13.674 11.124 27.906 4.844  -4.996 -0.460 H18 A9Z 47 
A9Z H19   H19 H 0 1 N Y N N N N 13.777 19.799 23.116 -7.339 -1.228 1.201  H19 A9Z 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A9Z "O3'" "C3'" SING N N 1  
A9Z "C3'" "C4'" SING N N 2  
A9Z "C3'" "C2'" SING N N 3  
A9Z "C4'" "C5'" SING N N 4  
A9Z "C4'" "O4'" SING N N 5  
A9Z "C5'" "O5'" SING N N 6  
A9Z C6T   C4T   SING N N 7  
A9Z C6T   C7T   SING N N 8  
A9Z C4T   C5T   DOUB Y N 9  
A9Z C4T   N3T   SING Y N 10 
A9Z C5T   N1T   SING Y N 11 
A9Z OP1   P     DOUB N N 12 
A9Z N3T   N2T   DOUB Y N 13 
A9Z N1T   "C2'" SING N N 14 
A9Z N1T   N2T   SING Y N 15 
A9Z "C2'" "C1'" SING N N 16 
A9Z "O4'" "C1'" SING N N 17 
A9Z "O5'" P     SING N N 18 
A9Z "C1'" N9    SING N N 19 
A9Z P     OP3   SING N N 20 
A9Z P     OP2   SING N N 21 
A9Z N3    C4    DOUB Y N 22 
A9Z N3    C2    SING Y N 23 
A9Z N9    C4    SING Y N 24 
A9Z N9    C8    SING Y N 25 
A9Z C4    C5    SING Y N 26 
A9Z C2    N1    DOUB Y N 27 
A9Z C8    N7    DOUB Y N 28 
A9Z C5    N7    SING Y N 29 
A9Z C5    C6    DOUB Y N 30 
A9Z N1    C6    SING Y N 31 
A9Z C6    N6    SING N N 32 
A9Z OP2   H1    SING N N 33 
A9Z "C5'" H2    SING N N 34 
A9Z "C5'" H3    SING N N 35 
A9Z "C4'" H4    SING N N 36 
A9Z "C3'" H5    SING N N 37 
A9Z "O3'" H6    SING N N 38 
A9Z "C2'" H7    SING N N 39 
A9Z C5T   H8    SING N N 40 
A9Z C6T   H9    SING N N 41 
A9Z C6T   H10   SING N N 42 
A9Z C7T   H11   SING N N 43 
A9Z C7T   H12   SING N N 44 
A9Z C7T   H13   SING N N 45 
A9Z "C1'" H14   SING N N 46 
A9Z C8    H15   SING N N 47 
A9Z C2    H16   SING N N 48 
A9Z N6    H17   SING N N 49 
A9Z N6    H18   SING N N 50 
A9Z OP3   H19   SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A9Z SMILES           ACDLabs              12.01 "O=P(O)(O)OCC4OC(n2cnc1c(ncnc12)N)C(n3nnc(c3)CC)C4O"                                                                                                                                             
A9Z InChI            InChI                1.03  "InChI=1S/C14H19N8O6P/c1-2-7-3-22(20-19-7)10-11(23)8(4-27-29(24,25)26)28-14(10)21-6-18-9-12(15)16-5-17-13(9)21/h3,5-6,8,10-11,14,23H,2,4H2,1H3,(H2,15,16,17)(H2,24,25,26)/t8-,10-,11-,14-/m1/s1" 
A9Z InChIKey         InChI                1.03  TWWQOUJMYDQJOB-IDTAVKCVSA-N                                                                                                                                                                      
A9Z SMILES_CANONICAL CACTVS               3.370 "CCc1cn(nn1)[C@@H]2[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]2n3cnc4c(N)ncnc34"                                                                                                                         
A9Z SMILES           CACTVS               3.370 "CCc1cn(nn1)[CH]2[CH](O)[CH](CO[P](O)(O)=O)O[CH]2n3cnc4c(N)ncnc34"                                                                                                                               
A9Z SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCc1cn(nn1)[C@@H]2[C@@H]([C@H](O[C@H]2n3cnc4c3ncnc4N)COP(=O)(O)O)O"                                                                                                                             
A9Z SMILES           "OpenEye OEToolkits" 1.7.6 "CCc1cn(nn1)C2C(C(OC2n3cnc4c3ncnc4N)COP(=O)(O)O)O"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A9Z "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-2'-(4-ethyl-1H-1,2,3-triazol-1-yl)adenosine 5'-(dihydrogen phosphate)
;
A9Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-(4-ethyl-1,2,3-triazol-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A9Z "Create component" 2013-01-16 PDBJ 
A9Z "Initial release"  2013-07-03 RCSB 
A9Z "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A9Z 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7T 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
