data_A1IIZ
# 
_chem_comp.id                                    A1IIZ 
_chem_comp.name                                  "2,4-bis(oxidanylidene)-1-[2-oxidanylidene-2-[[(2S)-3-oxidanylidene-3-(propylamino)-2-[3-(3-pyridin-3-yl-1,2,4-oxadiazol-5-yl)propanoylamino]propyl]amino]ethyl]pyrimidine-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H27 N9 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-07-26 
_chem_comp.pdbx_modified_date                    2024-08-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        541.517 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IIZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9G7H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IIZ C2  C1  C 0 1 N N N N N N -21.343 28.665 23.593 -5.234 2.128  0.828  C2  A1IIZ 1  
A1IIZ C3  C2  C 0 1 N N N N N N -23.191 28.971 22.101 -2.899 1.545  0.447  C3  A1IIZ 2  
A1IIZ C4  C3  C 0 1 N N N N N N -18.968 28.602 23.099 -6.447 3.352  -0.909 C4  A1IIZ 3  
A1IIZ C5  C4  C 0 1 N N N N N N -20.040 28.512 24.044 -6.415 2.713  0.416  C5  A1IIZ 4  
A1IIZ C6  C5  C 0 1 N N N N N N -23.600 28.737 20.647 -2.873 0.103  0.008  C6  A1IIZ 5  
A1IIZ C7  C6  C 0 1 N N N N N N -19.991 28.214 25.409 -7.608 2.698  1.277  C7  A1IIZ 6  
A1IIZ N8  N1  N 0 1 Y N N N N N -24.432 23.974 10.380 7.107  -0.116 -0.717 N8  A1IIZ 7  
A1IIZ N9  N2  N 0 1 Y N N N N N -29.207 23.821 9.260  7.762  4.411  0.872  N9  A1IIZ 8  
A1IIZ C10 C7  C 0 1 N N N N N N -23.903 24.353 19.220 -0.396 -4.125 -0.210 C10 A1IIZ 9  
A1IIZ C11 C8  C 0 1 N N N N N N -24.014 26.062 15.981 1.839  -1.982 0.481  C11 A1IIZ 10 
A1IIZ C12 C9  C 0 1 N N N N N N -24.023 25.580 14.473 3.006  -1.176 -0.031 C12 A1IIZ 11 
A1IIZ C14 C10 C 0 1 N N N N N N -25.118 24.572 14.187 4.218  -1.402 0.876  C14 A1IIZ 12 
A1IIZ C16 C11 C 0 1 Y N N N N N -25.059 24.315 12.657 5.384  -0.596 0.364  C16 A1IIZ 13 
A1IIZ C18 C12 C 0 1 Y N N N N N -25.805 23.982 10.597 6.803  0.936  -0.002 C18 A1IIZ 14 
A1IIZ C19 C13 C 0 1 Y N N N N N -26.845 23.783 9.723  7.542  2.223  0.031  C19 A1IIZ 15 
A1IIZ C20 C14 C 0 1 Y N N N N N -28.159 24.063 10.149 7.107  3.269  0.842  C20 A1IIZ 16 
A1IIZ C21 C15 C 0 1 Y N N N N N -26.684 23.338 8.392  8.686  2.404  -0.750 C21 A1IIZ 17 
A1IIZ C22 C16 C 0 1 Y N N N N N -27.720 23.087 7.504  9.341  3.623  -0.684 C22 A1IIZ 18 
A1IIZ C23 C17 C 0 1 Y N N N N N -29.010 23.340 7.934  8.845  4.611  0.146  C23 A1IIZ 19 
A1IIZ N7  N3  N 0 1 Y N N N N N -26.119 24.113 11.916 5.688  0.632  0.701  N7  A1IIZ 20 
A1IIZ O7  O1  O 0 1 Y N N N N N -23.848 24.238 11.734 6.303  -1.002 -0.518 O7  A1IIZ 21 
A1IIZ O6  O2  O 0 1 N N N N N N -24.527 27.168 16.285 1.965  -2.668 1.472  O6  A1IIZ 22 
A1IIZ N5  N4  N 0 1 N N N N N N -23.425 25.265 16.927 0.656  -1.939 -0.164 N5  A1IIZ 23 
A1IIZ C9  C18 C 0 1 N N S N N N -23.319 25.618 18.403 -0.477 -2.722 0.333  C9  A1IIZ 24 
A1IIZ O5  O3  O 0 1 N N N N N N -23.399 23.205 19.051 0.519  -4.440 -0.941 O5  A1IIZ 25 
A1IIZ N6  N5  N 0 1 N N N N N N -25.013 24.542 20.053 -1.340 -5.030 0.116  N6  A1IIZ 26 
A1IIZ C13 C19 C 0 1 N N N N N N -25.565 23.388 20.866 -1.261 -6.394 -0.413 C13 A1IIZ 27 
A1IIZ C15 C20 C 0 1 N N N N N N -26.344 22.449 19.941 -2.445 -7.212 0.107  C15 A1IIZ 28 
A1IIZ C17 C21 C 0 1 N N N N N N -25.679 21.103 19.654 -2.362 -8.636 -0.445 C17 A1IIZ 29 
A1IIZ C8  C22 C 0 1 N N N N N N -23.859 27.013 18.762 -1.785 -2.073 -0.125 C8  A1IIZ 30 
A1IIZ N3  N6  N 0 1 N N N N N N -23.478 27.443 20.156 -1.811 -0.672 0.302  N3  A1IIZ 31 
A1IIZ O3  O4  O 0 1 N N N N N N -24.037 29.708 20.024 -3.808 -0.359 -0.610 O3  A1IIZ 32 
A1IIZ N1  N7  N 0 1 N N N N N N -21.682 28.958 22.241 -4.152 2.166  0.009  N1  A1IIZ 33 
A1IIZ C1  C23 C 0 1 N N N N N N -20.677 29.057 21.323 -4.203 2.760  -1.194 C1  A1IIZ 34 
A1IIZ O1  O5  O 0 1 N N N N N N -20.891 29.271 20.119 -3.205 2.771  -1.888 O1  A1IIZ 35 
A1IIZ N2  N8  N 0 1 N N N N N N -19.287 28.880 21.724 -5.321 3.347  -1.654 N2  A1IIZ 36 
A1IIZ O2  O6  O 0 1 N N N N N N -17.768 28.470 23.378 -7.462 3.881  -1.320 O2  A1IIZ 37 
A1IIZ O4  O7  O 0 1 N N N N N N -19.634 28.998 26.296 -7.595 2.077  2.323  O4  A1IIZ 38 
A1IIZ N4  N9  N 0 1 N N N N N N -20.530 27.025 25.643 -8.715 3.372  0.907  N4  A1IIZ 39 
A1IIZ H1  H1  H 0 1 N N N N N N -22.146 28.556 24.307 -5.170 1.649  1.794  H1  A1IIZ 40 
A1IIZ H2  H2  H 0 1 N N N N N N -23.576 29.947 22.432 -2.830 1.595  1.534  H2  A1IIZ 41 
A1IIZ H3  H3  H 0 1 N N N N N N -23.619 28.176 22.729 -2.056 2.075  0.004  H3  A1IIZ 42 
A1IIZ H4  H4  H 0 1 N N N N N N -23.051 25.118 14.246 3.248  -1.492 -1.046 H4  A1IIZ 43 
A1IIZ H5  H5  H 0 1 N N N N N N -24.173 26.456 13.825 2.744  -0.118 -0.032 H5  A1IIZ 44 
A1IIZ H6  H6  H 0 1 N N N N N N -26.099 24.980 14.470 3.976  -1.087 1.891  H6  A1IIZ 45 
A1IIZ H7  H7  H 0 1 N N N N N N -24.935 23.639 14.740 4.479  -2.460 0.876  H7  A1IIZ 46 
A1IIZ H8  H8  H 0 1 N N N N N N -28.350 24.454 11.137 6.224  3.141  1.451  H8  A1IIZ 47 
A1IIZ H9  H9  H 0 1 N N N N N N -25.676 23.181 8.038  9.051  1.614  -1.390 H9  A1IIZ 48 
A1IIZ H10 H10 H 0 1 N N N N N N -27.526 22.707 6.512  10.228 3.799  -1.273 H10 A1IIZ 49 
A1IIZ H11 H11 H 0 1 N N N N N N -29.851 23.176 7.277  9.353  5.563  0.201  H11 A1IIZ 50 
A1IIZ H12 H12 H 0 1 N N N N N N -23.039 24.393 16.627 0.556  -1.390 -0.957 H12 A1IIZ 51 
A1IIZ H13 H13 H 0 1 N N N N N N -22.244 25.640 18.636 -0.449 -2.752 1.422  H13 A1IIZ 52 
A1IIZ H14 H14 H 0 1 N N N N N N -25.443 25.443 20.112 -2.072 -4.778 0.700  H14 A1IIZ 53 
A1IIZ H15 H15 H 0 1 N N N N N N -26.236 23.776 21.647 -1.290 -6.364 -1.502 H15 A1IIZ 54 
A1IIZ H16 H16 H 0 1 N N N N N N -24.736 22.838 21.335 -0.329 -6.856 -0.086 H16 A1IIZ 55 
A1IIZ H17 H17 H 0 1 N N N N N N -26.491 22.965 18.981 -2.416 -7.242 1.196  H17 A1IIZ 56 
A1IIZ H18 H18 H 0 1 N N N N N N -27.322 22.251 20.405 -3.377 -6.749 -0.220 H18 A1IIZ 57 
A1IIZ H19 H19 H 0 1 N N N N N N -26.320 20.512 18.984 -2.391 -8.606 -1.534 H19 A1IIZ 58 
A1IIZ H20 H20 H 0 1 N N N N N N -24.704 21.271 19.174 -1.431 -9.099 -0.119 H20 A1IIZ 59 
A1IIZ H21 H21 H 0 1 N N N N N N -25.534 20.557 20.598 -3.206 -9.219 -0.075 H21 A1IIZ 60 
A1IIZ H22 H22 H 0 1 N N N N N N -23.454 27.742 18.045 -1.855 -2.123 -1.211 H22 A1IIZ 61 
A1IIZ H23 H23 H 0 1 N N N N N N -24.956 26.996 18.686 -2.628 -2.603 0.318  H23 A1IIZ 62 
A1IIZ H24 H24 H 0 1 N N N N N N -23.111 26.746 20.772 -1.063 -0.302 0.797  H24 A1IIZ 63 
A1IIZ H25 H25 H 0 1 N N N N N N -18.557 28.952 21.045 -5.320 3.766  -2.529 H25 A1IIZ 64 
A1IIZ H26 H26 H 0 1 N N N N N N -20.669 26.715 26.584 -8.751 3.806  0.040  H26 A1IIZ 65 
A1IIZ H27 H27 H 0 1 N N N N N N -20.797 26.438 24.879 -9.475 3.423  1.508  H27 A1IIZ 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IIZ C22 C23 DOUB Y N 1  
A1IIZ C22 C21 SING Y N 2  
A1IIZ C23 N9  SING Y N 3  
A1IIZ C21 C19 DOUB Y N 4  
A1IIZ N9  C20 DOUB Y N 5  
A1IIZ C19 C20 SING Y N 6  
A1IIZ C19 C18 SING N N 7  
A1IIZ N8  C18 DOUB Y N 8  
A1IIZ N8  O7  SING Y N 9  
A1IIZ C18 N7  SING Y N 10 
A1IIZ O7  C16 SING Y N 11 
A1IIZ N7  C16 DOUB Y N 12 
A1IIZ C16 C14 SING N N 13 
A1IIZ C14 C12 SING N N 14 
A1IIZ C12 C11 SING N N 15 
A1IIZ C11 O6  DOUB N N 16 
A1IIZ C11 N5  SING N N 17 
A1IIZ N5  C9  SING N N 18 
A1IIZ C9  C8  SING N N 19 
A1IIZ C9  C10 SING N N 20 
A1IIZ C8  N3  SING N N 21 
A1IIZ O5  C10 DOUB N N 22 
A1IIZ C10 N6  SING N N 23 
A1IIZ C17 C15 SING N N 24 
A1IIZ C15 C13 SING N N 25 
A1IIZ O3  C6  DOUB N N 26 
A1IIZ N6  C13 SING N N 27 
A1IIZ O1  C1  DOUB N N 28 
A1IIZ N3  C6  SING N N 29 
A1IIZ C6  C3  SING N N 30 
A1IIZ C1  N2  SING N N 31 
A1IIZ C1  N1  SING N N 32 
A1IIZ N2  C4  SING N N 33 
A1IIZ C3  N1  SING N N 34 
A1IIZ N1  C2  SING N N 35 
A1IIZ C4  O2  DOUB N N 36 
A1IIZ C4  C5  SING N N 37 
A1IIZ C2  C5  DOUB N N 38 
A1IIZ C5  C7  SING N N 39 
A1IIZ C7  N4  SING N N 40 
A1IIZ C7  O4  DOUB N N 41 
A1IIZ C2  H1  SING N N 42 
A1IIZ C3  H2  SING N N 43 
A1IIZ C3  H3  SING N N 44 
A1IIZ C12 H4  SING N N 45 
A1IIZ C12 H5  SING N N 46 
A1IIZ C14 H6  SING N N 47 
A1IIZ C14 H7  SING N N 48 
A1IIZ C20 H8  SING N N 49 
A1IIZ C21 H9  SING N N 50 
A1IIZ C22 H10 SING N N 51 
A1IIZ C23 H11 SING N N 52 
A1IIZ N5  H12 SING N N 53 
A1IIZ C9  H13 SING N N 54 
A1IIZ N6  H14 SING N N 55 
A1IIZ C13 H15 SING N N 56 
A1IIZ C13 H16 SING N N 57 
A1IIZ C15 H17 SING N N 58 
A1IIZ C15 H18 SING N N 59 
A1IIZ C17 H19 SING N N 60 
A1IIZ C17 H20 SING N N 61 
A1IIZ C17 H21 SING N N 62 
A1IIZ C8  H22 SING N N 63 
A1IIZ C8  H23 SING N N 64 
A1IIZ N3  H24 SING N N 65 
A1IIZ N2  H25 SING N N 66 
A1IIZ N4  H26 SING N N 67 
A1IIZ N4  H27 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IIZ InChI            InChI                1.06  "InChI=1S/C23H27N9O7/c1-2-7-26-22(37)15(10-27-17(34)12-32-11-14(19(24)35)21(36)30-23(32)38)28-16(33)5-6-18-29-20(31-39-18)13-4-3-8-25-9-13/h3-4,8-9,11,15H,2,5-7,10,12H2,1H3,(H2,24,35)(H,26,37)(H,27,34)(H,28,33)(H,30,36,38)/t15-/m0/s1" 
A1IIZ InChIKey         InChI                1.06  WGTNFHHLZQGSEM-HNNXBMFYSA-N                                                                                                                                                                                                                
A1IIZ SMILES_CANONICAL CACTVS               3.385 "CCCNC(=O)[C@H](CNC(=O)CN1C=C(C(N)=O)C(=O)NC1=O)NC(=O)CCc2onc(n2)c3cccnc3"                                                                                                                                                                 
A1IIZ SMILES           CACTVS               3.385 "CCCNC(=O)[CH](CNC(=O)CN1C=C(C(N)=O)C(=O)NC1=O)NC(=O)CCc2onc(n2)c3cccnc3"                                                                                                                                                                  
A1IIZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCNC(=O)[C@H](CNC(=O)CN1C=C(C(=O)NC1=O)C(=O)N)NC(=O)CCc2nc(no2)c3cccnc3"                                                                                                                                                                 
A1IIZ SMILES           "OpenEye OEToolkits" 2.0.7 "CCCNC(=O)C(CNC(=O)CN1C=C(C(=O)NC1=O)C(=O)N)NC(=O)CCc2nc(no2)c3cccnc3"                                                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           A1IIZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2,4-bis(oxidanylidene)-1-[2-oxidanylidene-2-[[(2~{S})-3-oxidanylidene-3-(propylamino)-2-[3-(3-pyridin-3-yl-1,2,4-oxadiazol-5-yl)propanoylamino]propyl]amino]ethyl]pyrimidine-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IIZ "Create component" 2024-07-26 PDBE 
A1IIZ "Initial release"  2024-08-14 RCSB 
# 
