data_A1APZ
# 
_chem_comp.id                                    A1APZ 
_chem_comp.name                                  "1'-{[5-chloro-1-(4,4,4-trifluorobutyl)-1H-1,3-benzimidazol-2-yl]methyl}-1-(methanesulfonyl)spiro[azetidine-3,3'-indol]-2'(1'H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H22 Cl F3 N4 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-26 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        526.959 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1APZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9BJM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1APZ C1   C1  C  0 1 Y N N N N N 22.180 16.964 23.003 1.633  3.764  2.636  C1   A1APZ 1  
A1APZ C10  C2  C  0 1 Y N N N N N 18.136 22.234 21.607 -2.306 -1.661 0.355  C10  A1APZ 2  
A1APZ C11  C3  C  0 1 Y N N N N N 21.203 18.626 21.095 1.021  2.094  0.501  C11  A1APZ 3  
A1APZ C12  C4  C  0 1 Y N N N N N 17.775 23.799 23.791 -2.325 -4.424 0.586  C12  A1APZ 4  
A1APZ C13  C5  C  0 1 Y N N N N N 20.009 21.434 20.721 -0.920 -0.340 -0.745 C13  A1APZ 5  
A1APZ C14  C6  C  0 1 N N N N N N 20.203 18.362 19.032 2.146  0.604  -0.803 C14  A1APZ 6  
A1APZ C15  C7  C  0 1 N N N N N N 19.207 15.962 19.497 3.963  0.181  0.968  C15  A1APZ 7  
A1APZ C16  C8  C  0 1 N N N N N N 21.092 15.944 18.677 4.430  1.718  -0.402 C16  A1APZ 8  
A1APZ C17  C9  C  0 1 N N N N N N 20.389 16.942 19.601 3.121  1.187  0.183  C17  A1APZ 9  
A1APZ C18  C10 C  0 1 N N N N N N 21.109 13.373 17.462 7.626  -0.129 0.477  C18  A1APZ 10 
A1APZ C19  C11 C  0 1 N N N N N N 20.842 20.672 19.761 -0.267 0.894  -1.311 C19  A1APZ 11 
A1APZ C2   C12 C  0 1 Y N N N N N 22.291 18.327 23.157 0.346  3.723  2.134  C2   A1APZ 12 
A1APZ C20  C13 C  0 1 N N N N N N 17.378 19.520 20.091 -3.991 1.034  -0.402 C20  A1APZ 13 
A1APZ C21  C14 C  0 1 N N N N N N 15.877 19.492 19.928 -4.838 2.190  0.135  C21  A1APZ 14 
A1APZ C22  C15 C  0 1 N N N N N N 17.905 20.825 19.548 -2.772 0.832  0.501  C22  A1APZ 15 
A1APZ C23  C16 C  0 1 N N N N N N 15.377 18.098 19.629 -6.116 2.314  -0.697 C23  A1APZ 16 
A1APZ C3   C17 C  0 1 Y N N N N N 21.578 16.430 21.888 2.619  2.975  2.068  C3   A1APZ 17 
A1APZ C4   C18 C  0 1 Y N N N N N 16.851 22.590 21.929 -3.289 -2.287 1.110  C4   A1APZ 18 
A1APZ C5   C19 C  0 1 Y N N N N N 21.797 19.187 22.201 0.036  2.895  1.074  C5   A1APZ 19 
A1APZ C6   C20 C  0 1 Y N N N N N 16.701 23.386 23.038 -3.295 -3.661 1.223  C6   A1APZ 20 
A1APZ C7   C21 C  0 1 Y N N N N N 19.053 23.431 23.444 -1.343 -3.819 -0.166 C7   A1APZ 21 
A1APZ C8   C22 C  0 1 Y N N N N N 21.076 17.267 20.918 2.317  2.152  1.007  C8   A1APZ 22 
A1APZ C9   C23 C  0 1 Y N N N N N 19.238 22.636 22.328 -1.322 -2.428 -0.291 C9   A1APZ 23 
A1APZ F31  F1  F  0 1 N N N N N N 16.317 17.125 19.820 -6.890 1.160  -0.537 F31  A1APZ 24 
A1APZ F32  F2  F  0 1 N N N N N N 14.941 18.044 18.336 -6.845 3.428  -0.267 F32  A1APZ 25 
A1APZ F33  F3  F  0 1 N N N N N N 14.348 17.820 20.467 -5.781 2.469  -2.046 F33  A1APZ 26 
A1APZ N24  N1  N  0 1 Y N N N N N 20.387 22.132 21.772 -0.508 -1.559 -0.944 N24  A1APZ 27 
A1APZ N25  N2  N  0 1 Y N N N N N 18.657 21.480 20.593 -2.021 -0.343 0.053  N25  A1APZ 28 
A1APZ N26  N3  N  0 1 N N N N N N 20.634 19.255 19.991 0.956  1.188  -0.560 N26  A1APZ 29 
A1APZ N27  N4  N  0 1 N N N N N N 19.761 15.522 18.182 4.988  0.389  -0.076 N27  A1APZ 30 
A1APZ O28  O1  O  0 1 N N N N N N 19.751 18.654 17.933 2.384  -0.228 -1.652 O28  A1APZ 31 
A1APZ O29  O2  O  0 1 N N N N N N 19.231 14.349 15.954 6.509  0.030  -1.941 O29  A1APZ 32 
A1APZ O30  O3  O  0 1 N N N N N N 18.578 13.205 18.111 5.834  -1.855 -0.488 O30  A1APZ 33 
A1APZ S34  S1  S  0 1 N N N N N N 19.477 14.050 17.351 6.256  -0.508 -0.650 S34  A1APZ 34 
A1APZ CL35 CL1 CL 0 0 N N N N N N 17.499 24.783 25.189 -2.351 -6.153 0.741  CL35 A1APZ 35 
A1APZ H1   H1  H  0 1 N N N N N N 22.570 16.307 23.766 1.871  4.413  3.466  H1   A1APZ 36 
A1APZ H2   H2  H  0 1 N N N N N N 18.219 16.442 19.440 4.262  0.533  1.956  H2   A1APZ 37 
A1APZ H3   H3  H  0 1 N N N N N N 19.191 15.181 20.271 3.546  -0.826 0.983  H3   A1APZ 38 
A1APZ H4   H4  H  0 1 N N N N N N 21.653 15.156 19.201 4.382  1.925  -1.471 H4   A1APZ 39 
A1APZ H5   H5  H  0 1 N N N N N N 21.735 16.406 17.914 4.869  2.535  0.171  H5   A1APZ 40 
A1APZ H6   H6  H  0 1 N N N N N N 21.336 13.131 18.511 7.837  0.940  0.446  H6   A1APZ 41 
A1APZ H7   H7  H  0 1 N N N N N N 21.168 12.458 16.854 7.351  -0.416 1.492  H7   A1APZ 42 
A1APZ H8   H8  H  0 1 N N N N N N 21.837 14.109 17.090 8.513  -0.683 0.170  H8   A1APZ 43 
A1APZ H9   H9  H  0 1 N N N N N N 21.903 20.920 19.912 -0.019 0.726  -2.359 H9   A1APZ 44 
A1APZ H10  H10 H  0 1 N N N N N N 20.549 20.927 18.732 -0.954 1.737  -1.231 H10  A1APZ 45 
A1APZ H11  H11 H  0 1 N N N N N N 22.771 18.727 24.038 -0.422 4.342  2.574  H11  A1APZ 46 
A1APZ H12  H12 H  0 1 N N N N N N 17.825 18.682 19.536 -4.587 0.122  -0.416 H12  A1APZ 47 
A1APZ H13  H13 H  0 1 N N N N N N 17.635 19.433 21.157 -3.658 1.266  -1.414 H13  A1APZ 48 
A1APZ H14  H14 H  0 1 N N N N N N 15.595 20.158 19.099 -5.098 1.996  1.176  H14  A1APZ 49 
A1APZ H15  H15 H  0 1 N N N N N N 15.410 19.847 20.859 -4.269 3.118  0.069  H15  A1APZ 50 
A1APZ H16  H16 H  0 1 N N N N N N 18.559 20.632 18.685 -2.132 1.713  0.450  H16  A1APZ 51 
A1APZ H17  H17 H  0 1 N N N N N N 17.066 21.464 19.237 -3.102 0.682  1.529  H17  A1APZ 52 
A1APZ H18  H18 H  0 1 N N N N N N 21.500 15.359 21.774 3.626  3.005  2.458  H18  A1APZ 53 
A1APZ H19  H19 H  0 1 N N N N N N 16.005 22.263 21.343 -4.046 -1.699 1.607  H19  A1APZ 54 
A1APZ H20  H20 H  0 1 N N N N N N 21.873 20.258 22.315 -0.974 2.863  0.694  H20  A1APZ 55 
A1APZ H21  H21 H  0 1 N N N N N N 15.708 23.697 23.328 -4.060 -4.147 1.810  H21  A1APZ 56 
A1APZ H22  H22 H  0 1 N N N N N N 19.898 23.757 24.033 -0.591 -4.419 -0.659 H22  A1APZ 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1APZ O29 S34  DOUB N N 1  
A1APZ S34 C18  SING N N 2  
A1APZ S34 O30  DOUB N N 3  
A1APZ S34 N27  SING N N 4  
A1APZ O28 C14  DOUB N N 5  
A1APZ N27 C16  SING N N 6  
A1APZ N27 C15  SING N N 7  
A1APZ F32 C23  SING N N 8  
A1APZ C16 C17  SING N N 9  
A1APZ C14 C17  SING N N 10 
A1APZ C14 N26  SING N N 11 
A1APZ C15 C17  SING N N 12 
A1APZ C22 C20  SING N N 13 
A1APZ C22 N25  SING N N 14 
A1APZ C17 C8   SING N N 15 
A1APZ C23 F31  SING N N 16 
A1APZ C23 C21  SING N N 17 
A1APZ C23 F33  SING N N 18 
A1APZ C19 N26  SING N N 19 
A1APZ C19 C13  SING N N 20 
A1APZ C21 C20  SING N N 21 
A1APZ N26 C11  SING N N 22 
A1APZ N25 C13  SING Y N 23 
A1APZ N25 C10  SING Y N 24 
A1APZ C13 N24  DOUB Y N 25 
A1APZ C8  C11  SING Y N 26 
A1APZ C8  C3   DOUB Y N 27 
A1APZ C11 C5   DOUB Y N 28 
A1APZ C10 C4   DOUB Y N 29 
A1APZ C10 C9   SING Y N 30 
A1APZ N24 C9   SING Y N 31 
A1APZ C3  C1   SING Y N 32 
A1APZ C4  C6   SING Y N 33 
A1APZ C5  C2   SING Y N 34 
A1APZ C9  C7   DOUB Y N 35 
A1APZ C1  C2   DOUB Y N 36 
A1APZ C6  C12  DOUB Y N 37 
A1APZ C7  C12  SING Y N 38 
A1APZ C12 CL35 SING N N 39 
A1APZ C1  H1   SING N N 40 
A1APZ C15 H2   SING N N 41 
A1APZ C15 H3   SING N N 42 
A1APZ C16 H4   SING N N 43 
A1APZ C16 H5   SING N N 44 
A1APZ C18 H6   SING N N 45 
A1APZ C18 H7   SING N N 46 
A1APZ C18 H8   SING N N 47 
A1APZ C19 H9   SING N N 48 
A1APZ C19 H10  SING N N 49 
A1APZ C2  H11  SING N N 50 
A1APZ C20 H12  SING N N 51 
A1APZ C20 H13  SING N N 52 
A1APZ C21 H14  SING N N 53 
A1APZ C21 H15  SING N N 54 
A1APZ C22 H16  SING N N 55 
A1APZ C22 H17  SING N N 56 
A1APZ C3  H18  SING N N 57 
A1APZ C4  H19  SING N N 58 
A1APZ C5  H20  SING N N 59 
A1APZ C6  H21  SING N N 60 
A1APZ C7  H22  SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1APZ SMILES           ACDLabs              12.01 "FC(F)(F)CCCn1c2ccc(Cl)cc2nc1CN1c2ccccc2C2(CN(C2)S(C)(=O)=O)C1=O"                                                                                                          
A1APZ InChI            InChI                1.06  "InChI=1S/C23H22ClF3N4O3S/c1-35(33,34)29-13-22(14-29)16-5-2-3-6-18(16)31(21(22)32)12-20-28-17-11-15(24)7-8-19(17)30(20)10-4-9-23(25,26)27/h2-3,5-8,11H,4,9-10,12-14H2,1H3" 
A1APZ InChIKey         InChI                1.06  FGAFKLPJKPDQGL-UHFFFAOYSA-N                                                                                                                                                
A1APZ SMILES_CANONICAL CACTVS               3.385 "C[S](=O)(=O)N1CC2(C1)C(=O)N(Cc3nc4cc(Cl)ccc4n3CCCC(F)(F)F)c5ccccc25"                                                                                                      
A1APZ SMILES           CACTVS               3.385 "C[S](=O)(=O)N1CC2(C1)C(=O)N(Cc3nc4cc(Cl)ccc4n3CCCC(F)(F)F)c5ccccc25"                                                                                                      
A1APZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)N1CC2(C1)c3ccccc3N(C2=O)Cc4nc5cc(ccc5n4CCCC(F)(F)F)Cl"                                                                                                          
A1APZ SMILES           "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)N1CC2(C1)c3ccccc3N(C2=O)Cc4nc5cc(ccc5n4CCCC(F)(F)F)Cl"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1APZ "SYSTEMATIC NAME" ACDLabs              12.01 "1'-{[5-chloro-1-(4,4,4-trifluorobutyl)-1H-1,3-benzimidazol-2-yl]methyl}-1-(methanesulfonyl)spiro[azetidine-3,3'-indol]-2'(1'H)-one" 
A1APZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1'-[[5-chloranyl-1-[4,4,4-tris(fluoranyl)butyl]benzimidazol-2-yl]methyl]-1-methylsulfonyl-spiro[azetidine-3,3'-indole]-2'-one"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1APZ "Create component" 2024-04-26 RCSB 
A1APZ "Initial release"  2024-07-10 RCSB 
# 
