data_7JZ
# 
_chem_comp.id                                    7JZ 
_chem_comp.name                                  2-deoxy-2,2-difluoro-beta-D-lyxo-hexopyranose 
_chem_comp.type                                  "D-saccharide, beta linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H10 F2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;2-DEOXY-2,2-DIFLUORO-BETA-D-GALACTOPYRANOSYL-ENZYME INTERMEDIATE; 2-deoxy-2,2-difluoro-beta-D-lyxo-hexose;
2-deoxy-2,2-difluoro-D-lyxo-hexose; 2-deoxy-2,2-difluoro-lyxo-hexose
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-05-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        200.137 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7JZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3HG4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 7JZ "2-DEOXY-2,2-DIFLUORO-BETA-D-GALACTOPYRANOSYL-ENZYME INTERMEDIATE" PDB ? 
2 7JZ 2-deoxy-2,2-difluoro-beta-D-lyxo-hexose                            PDB ? 
3 7JZ 2-deoxy-2,2-difluoro-D-lyxo-hexose                                 PDB ? 
4 7JZ 2-deoxy-2,2-difluoro-lyxo-hexose                                   PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7JZ F2A F2A F 0 1 N N N N N N 20.046 68.685 84.175 1.464  0.071  1.296  F2A 7JZ 1  
7JZ C2  C2  C 0 1 N N N N N N 19.805 68.996 85.442 1.359  0.282  -0.082 C2  7JZ 2  
7JZ F2B F2B F 0 1 N N N N N N 18.792 69.855 85.521 2.606  0.653  -0.596 F2B 7JZ 3  
7JZ C1  C1  C 0 1 N N R N N N 21.069 69.658 85.994 0.343  1.396  -0.353 C1  7JZ 4  
7JZ C3  C3  C 0 1 N N S N N N 19.451 67.737 86.257 0.887  -1.006 -0.763 C3  7JZ 5  
7JZ O3  O3  O 0 1 N N N N N N 18.676 66.801 85.501 1.792  -2.068 -0.455 O3  7JZ 6  
7JZ C4  C4  C 0 1 N N R N N N 20.698 67.047 86.816 -0.512 -1.360 -0.249 C4  7JZ 7  
7JZ O4  O4  O 0 1 N N N N N N 21.541 66.607 85.742 -0.453 -1.619 1.155  O4  7JZ 8  
7JZ C5  C5  C 0 1 N N R N N N 21.452 68.000 87.750 -1.456 -0.184 -0.513 C5  7JZ 9  
7JZ O5  O5  O 0 1 N N N N N N 21.244 69.385 87.390 -0.942 0.992  0.122  O5  7JZ 10 
7JZ C6  C6  C 0 1 N N N N N N 22.942 67.664 87.838 -2.842 -0.505 0.051  C6  7JZ 11 
7JZ O6  O6  O 0 1 N N N N N N 23.490 68.190 89.057 -3.752 0.540  -0.296 O6  7JZ 12 
7JZ O1  O1  O 0 1 N Y N N N N 22.201 69.152 85.282 0.749  2.586  0.326  O1  7JZ 13 
7JZ H1  H1  H 0 1 N N N N N N 20.971 70.746 85.866 0.291  1.588  -1.424 H1  7JZ 14 
7JZ H3  H3  H 0 1 N N N N N N 18.838 68.088 87.100 0.854  -0.857 -1.842 H3  7JZ 15 
7JZ HO3 HO3 H 0 1 N Y N N N N 18.504 67.156 84.637 2.700  -1.908 -0.746 HO3 7JZ 16 
7JZ H4  H4  H 0 1 N N N N N N 20.393 66.165 87.397 -0.878 -2.245 -0.768 H4  7JZ 17 
7JZ HO4 HO4 H 0 1 N Y N N N N 21.023 66.510 84.952 0.132  -2.350 1.396  HO4 7JZ 18 
7JZ H5  H5  H 0 1 N N N N N N 21.028 67.854 88.754 -1.532 -0.013 -1.587 H5  7JZ 19 
7JZ H61 H6  H 0 1 N N N N N N 23.071 66.572 87.822 -3.194 -1.448 -0.366 H61 7JZ 20 
7JZ H62 H6A H 0 1 N N N N N N 23.466 68.113 86.981 -2.781 -0.588 1.137  H62 7JZ 21 
7JZ HO6 HO6 H 0 1 N N N N N N 24.428 68.306 88.959 -4.652 0.403  0.030  HO6 7JZ 22 
7JZ HO1 H10 H 0 1 N Y N N N N 21.975 69.040 84.366 0.151  3.335  0.198  HO1 7JZ 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7JZ F2A C2  SING N N 1  
7JZ C2  F2B SING N N 2  
7JZ C2  C1  SING N N 3  
7JZ C2  C3  SING N N 4  
7JZ C1  O5  SING N N 5  
7JZ C1  O1  SING N N 6  
7JZ C1  H1  SING N N 7  
7JZ C3  O3  SING N N 8  
7JZ C3  C4  SING N N 9  
7JZ C3  H3  SING N N 10 
7JZ O3  HO3 SING N N 11 
7JZ C4  O4  SING N N 12 
7JZ C4  C5  SING N N 13 
7JZ C4  H4  SING N N 14 
7JZ O4  HO4 SING N N 15 
7JZ C5  O5  SING N N 16 
7JZ C5  C6  SING N N 17 
7JZ C5  H5  SING N N 18 
7JZ C6  O6  SING N N 19 
7JZ C6  H61 SING N N 20 
7JZ C6  H62 SING N N 21 
7JZ O6  HO6 SING N N 22 
7JZ O1  HO1 SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7JZ SMILES           ACDLabs              10.04 "FC1(F)C(O)C(O)C(OC1O)CO"                                                               
7JZ SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1O[C@@H](O)C(F)(F)[C@@H](O)[C@H]1O"                                             
7JZ SMILES           CACTVS               3.341 "OC[CH]1O[CH](O)C(F)(F)[CH](O)[CH]1O"                                                   
7JZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@@H]([C@@H](C([C@@H](O1)O)(F)F)O)O)O"                                       
7JZ SMILES           "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)(F)F)O)O)O"                                                           
7JZ InChI            InChI                1.03  "InChI=1S/C6H10F2O5/c7-6(8)4(11)3(10)2(1-9)13-5(6)12/h2-5,9-12H,1H2/t2-,3+,4+,5-/m1/s1" 
7JZ InChIKey         InChI                1.03  SHBCJQOMZTUYEL-MGCNEYSASA-N                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7JZ "SYSTEMATIC NAME" ACDLabs              10.04 2-deoxy-2,2-difluoro-beta-D-lyxo-hexopyranose                   
7JZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,4S,5R,6R)-3,3-difluoro-6-(hydroxymethyl)oxane-2,4,5-triol" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
7JZ "CARBOHYDRATE ISOMER"                 D        PDB ? 
7JZ "CARBOHYDRATE RING"                   pyranose PDB ? 
7JZ "CARBOHYDRATE ANOMER"                 beta     PDB ? 
7JZ "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7JZ "Create component"         2009-05-19 RCSB 
7JZ "Modify descriptor"        2011-06-04 RCSB 
7JZ "Other modification"       2020-07-03 RCSB 
7JZ "Modify synonyms"          2020-07-17 RCSB 
7JZ "Modify linking type"      2020-07-17 RCSB 
7JZ "Modify atom id"           2020-07-17 RCSB 
7JZ "Modify component atom id" 2020-07-17 RCSB 
7JZ "Modify leaving atom flag" 2020-07-17 RCSB 
7JZ "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            7JZ 
_pdbx_chem_comp_pcm.modified_residue_id                ASP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OD2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
