data_6CZ
# 
_chem_comp.id                                    6CZ 
_chem_comp.name                                  "5'-{[(3S)-3-amino-3-carboxypropyl](3-ethoxy-2,3-dioxopropyl)amino}-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H27 N7 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-16 
_chem_comp.pdbx_modified_date                    2017-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        481.460 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6CZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ISD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6CZ N1  N1   N 0 1 Y N N 22.084 27.406 113.416 6.640  1.257  1.710  N1  6CZ 1  
6CZ C1  C4   C 0 1 Y N N 23.360 25.535 114.969 4.228  0.860  0.556  C1  6CZ 2  
6CZ C2  C5   C 0 1 Y N N 23.008 26.794 115.544 4.700  -0.055 1.513  C2  6CZ 3  
6CZ C3  C2   C 0 1 Y N N 22.433 26.208 112.918 6.155  2.088  0.807  C3  6CZ 4  
6CZ C4  C8   C 0 1 Y N N 23.996 25.588 117.088 2.754  -0.752 0.858  C4  6CZ 5  
6CZ C5  C6   C 0 1 Y N N 22.355 27.728 114.714 5.958  0.182  2.093  C5  6CZ 6  
6CZ N2  N3   N 0 1 Y N N 23.053 25.288 113.656 4.982  1.907  0.237  N2  6CZ 7  
6CZ O1  O    O 0 1 N N N 24.315 15.112 116.646 -1.772 -5.355 1.268  O1  6CZ 8  
6CZ C6  C    C 0 1 N N N 23.382 15.933 117.088 -1.858 -5.007 0.114  C6  6CZ 9  
6CZ C7  CA   C 0 1 N N S 23.589 17.415 116.905 -2.747 -3.849 -0.259 C7  6CZ 10 
6CZ N3  N    N 0 1 N N N 22.620 17.894 115.999 -3.817 -3.712 0.738  N3  6CZ 11 
6CZ C8  CB   C 0 1 N N N 23.452 18.217 118.221 -1.920 -2.563 -0.299 C8  6CZ 12 
6CZ C9  CG   C 0 1 N N N 24.728 19.059 118.505 -2.788 -1.414 -0.816 C9  6CZ 13 
6CZ N4  NA*  N 0 1 N N N 24.525 20.274 119.250 -1.980 -0.189 -0.900 N4  6CZ 14 
6CZ C10 C5*  C 0 1 N N N 24.074 21.449 118.513 -1.030 -0.261 -2.017 C10 6CZ 15 
6CZ C11 C4*  C 0 1 N N R 24.366 21.504 117.057 0.043  0.816  -1.844 C11 6CZ 16 
6CZ O2  O4*  O 0 1 N N N 23.580 22.600 116.451 0.745  0.612  -0.606 O2  6CZ 17 
6CZ C12 C1*  C 0 1 N N R 24.488 23.475 115.811 2.114  1.015  -0.826 C12 6CZ 18 
6CZ C13 C2*  C 0 1 N N R 25.765 23.252 116.458 2.424  0.483  -2.249 C13 6CZ 19 
6CZ O3  O2*  O 0 1 N N N 26.860 23.606 115.559 3.471  1.239  -2.859 O3  6CZ 20 
6CZ C14 C3*  C 0 1 N N S 25.772 21.827 116.749 1.077  0.714  -2.983 C14 6CZ 21 
6CZ O4  O3*  O 0 1 N N N 26.192 21.083 115.577 1.119  1.928  -3.736 O4  6CZ 22 
6CZ N5  N9   N 0 1 Y N N 23.979 24.826 115.961 3.000  0.394  0.162  N5  6CZ 23 
6CZ N6  N7   N 0 1 Y N N 23.422 26.776 116.847 3.753  -1.013 1.650  N6  6CZ 24 
6CZ N7  N6   N 0 1 N N N 21.975 29.016 115.248 6.475  -0.685 3.040  N7  6CZ 25 
6CZ O5  OXT  O 0 1 N N N 22.325 15.531 117.637 -1.161 -5.652 -0.835 O5  6CZ 26 
6CZ C15 CB*  C 0 1 N N N 23.712 20.029 120.438 -2.836 0.999  -1.011 C15 6CZ 27 
6CZ C16 CG*  C 0 1 N N N 24.108 20.802 121.637 -3.622 1.174  0.263  C16 6CZ 28 
6CZ C17 CD*  C 0 1 N N N 24.158 20.110 123.036 -4.570 2.316  0.403  C17 6CZ 29 
6CZ O6  OD1* O 0 1 N N N 24.375 21.984 121.540 -3.483 0.390  1.170  O6  6CZ 30 
6CZ O7  OE*  O 0 1 N N N 25.107 20.518 124.063 -5.272 2.472  1.541  O7  6CZ 31 
6CZ O8  OE1* O 0 1 N N N 23.194 19.392 123.393 -4.710 3.103  -0.508 O8  6CZ 32 
6CZ C18 CF*  C 0 1 N N N 25.778 19.424 124.693 -6.177 3.605  1.607  C18 6CZ 33 
6CZ C19 CH*  C 0 1 N N N 26.110 19.807 126.138 -6.880 3.618  2.965  C19 6CZ 34 
6CZ H1  H21  H 0 1 N N N 22.204 25.984 111.887 6.742  2.950  0.525  H1  6CZ 35 
6CZ H2  H81  H 0 1 N N N 24.411 25.281 118.037 1.862  -1.353 0.766  H2  6CZ 36 
6CZ H3  HA   H 0 1 N N N 24.599 17.584 116.502 -3.186 -4.029 -1.241 H3  6CZ 37 
6CZ H4  H    H 0 1 N N N 22.744 18.877 115.867 -3.436 -3.544 1.657  H4  6CZ 38 
6CZ H5  H2   H 0 1 N N N 22.723 17.424 115.122 -4.464 -2.984 0.476  H5  6CZ 39 
6CZ H7  HB2  H 0 1 N N N 22.588 18.892 118.141 -1.565 -2.327 0.705  H7  6CZ 40 
6CZ H8  HB3  H 0 1 N N N 23.293 17.515 119.053 -1.066 -2.700 -0.963 H8  6CZ 41 
6CZ H9  HG2  H 0 1 N N N 25.429 18.429 119.072 -3.171 -1.664 -1.805 H9  6CZ 42 
6CZ H10 HG3  H 0 1 N N N 25.177 19.328 117.537 -3.622 -1.253 -0.133 H10 6CZ 43 
6CZ H12 H5*1 H 0 1 N N N 24.545 22.328 118.976 -0.559 -1.244 -2.032 H12 6CZ 44 
6CZ H13 H5*2 H 0 1 N N N 22.982 21.513 118.632 -1.560 -0.098 -2.956 H13 6CZ 45 
6CZ H14 H4*1 H 0 1 N N N 24.092 20.547 116.588 -0.418 1.803  -1.850 H14 6CZ 46 
6CZ H15 H1*1 H 0 1 N N N 24.566 23.226 114.742 2.204  2.101  -0.792 H15 6CZ 47 
6CZ H16 H2*1 H 0 1 N N N 25.832 23.834 117.389 2.676  -0.577 -2.221 H16 6CZ 48 
6CZ H17 H2*2 H 0 1 N N N 27.690 23.455 115.996 3.701  0.944  -3.751 H17 6CZ 49 
6CZ H18 H3*1 H 0 1 N N N 26.419 21.604 117.610 0.846  -0.131 -3.632 H18 6CZ 50 
6CZ H19 H3*2 H 0 1 N N N 26.194 20.154 115.775 1.795  1.938  -4.427 H19 6CZ 51 
6CZ H20 H61  H 0 1 N N N 21.523 29.553 114.535 7.345  -0.511 3.433  H20 6CZ 52 
6CZ H21 H62  H 0 1 N N N 21.348 28.886 116.016 5.968  -1.466 3.311  H21 6CZ 53 
6CZ H22 H4   H 0 1 N N N 22.326 14.582 117.671 -0.605 -6.388 -0.548 H22 6CZ 54 
6CZ H23 HB*2 H 0 1 N N N 22.669 20.284 120.197 -2.216 1.880  -1.179 H23 6CZ 55 
6CZ H24 HB*1 H 0 1 N N N 23.781 18.959 120.684 -3.524 0.874  -1.848 H24 6CZ 56 
6CZ H25 HF*2 H 0 1 N N N 25.125 18.539 124.687 -5.612 4.529  1.482  H25 6CZ 57 
6CZ H26 HF*1 H 0 1 N N N 26.707 19.199 124.149 -6.920 3.524  0.813  H26 6CZ 58 
6CZ H27 HH*2 H 0 1 N N N 26.627 18.970 126.630 -6.137 3.699  3.759  H27 6CZ 59 
6CZ H28 HH*1 H 0 1 N N N 26.762 20.693 126.142 -7.560 4.469  3.015  H28 6CZ 60 
6CZ H29 HH*3 H 0 1 N N N 25.180 20.033 126.680 -7.446 2.694  3.090  H29 6CZ 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6CZ C3  N1  DOUB Y N 1  
6CZ C3  N2  SING Y N 2  
6CZ N1  C5  SING Y N 3  
6CZ N2  C1  DOUB Y N 4  
6CZ C5  N7  SING N N 5  
6CZ C5  C2  DOUB Y N 6  
6CZ C1  C2  SING Y N 7  
6CZ C1  N5  SING Y N 8  
6CZ C2  N6  SING Y N 9  
6CZ O3  C13 SING N N 10 
6CZ O4  C14 SING N N 11 
6CZ C12 N5  SING N N 12 
6CZ C12 O2  SING N N 13 
6CZ C12 C13 SING N N 14 
6CZ N5  C4  SING Y N 15 
6CZ N3  C7  SING N N 16 
6CZ O2  C11 SING N N 17 
6CZ C13 C14 SING N N 18 
6CZ O1  C6  DOUB N N 19 
6CZ C14 C11 SING N N 20 
6CZ N6  C4  DOUB Y N 21 
6CZ C7  C6  SING N N 22 
6CZ C7  C8  SING N N 23 
6CZ C11 C10 SING N N 24 
6CZ C6  O5  SING N N 25 
6CZ C8  C9  SING N N 26 
6CZ C9  N4  SING N N 27 
6CZ C10 N4  SING N N 28 
6CZ N4  C15 SING N N 29 
6CZ C15 C16 SING N N 30 
6CZ O6  C16 DOUB N N 31 
6CZ C16 C17 SING N N 32 
6CZ C17 O8  DOUB N N 33 
6CZ C17 O7  SING N N 34 
6CZ O7  C18 SING N N 35 
6CZ C18 C19 SING N N 36 
6CZ C3  H1  SING N N 37 
6CZ C4  H2  SING N N 38 
6CZ C7  H3  SING N N 39 
6CZ N3  H4  SING N N 40 
6CZ N3  H5  SING N N 41 
6CZ C8  H7  SING N N 42 
6CZ C8  H8  SING N N 43 
6CZ C9  H9  SING N N 44 
6CZ C9  H10 SING N N 45 
6CZ C10 H12 SING N N 46 
6CZ C10 H13 SING N N 47 
6CZ C11 H14 SING N N 48 
6CZ C12 H15 SING N N 49 
6CZ C13 H16 SING N N 50 
6CZ O3  H17 SING N N 51 
6CZ C14 H18 SING N N 52 
6CZ O4  H19 SING N N 53 
6CZ N7  H20 SING N N 54 
6CZ N7  H21 SING N N 55 
6CZ O5  H22 SING N N 56 
6CZ C15 H23 SING N N 57 
6CZ C15 H24 SING N N 58 
6CZ C18 H25 SING N N 59 
6CZ C18 H26 SING N N 60 
6CZ C19 H27 SING N N 61 
6CZ C19 H28 SING N N 62 
6CZ C19 H29 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6CZ SMILES           ACDLabs              12.01 "n3c(c1c(n(cn1)C2OC(CN(CCC(C(=O)O)N)CC(C(=O)OCC)=O)C(C2O)O)nc3)N" 
6CZ InChI            InChI                1.03  
"InChI=1S/C19H27N7O8/c1-2-33-19(32)10(27)5-25(4-3-9(20)18(30)31)6-11-13(28)14(29)17(34-11)26-8-24-12-15(21)22-7-23-16(12)26/h7-9,11,13-14,17,28-29H,2-6,20H2,1H3,(H,30,31)(H2,21,22,23)/t9-,11+,13+,14+,17+/m0/s1" 
6CZ InChIKey         InChI                1.03  IYHWPVZKSOPQIK-JHTGIODLSA-N 
6CZ SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)C(=O)CN(CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 
6CZ SMILES           CACTVS               3.385 "CCOC(=O)C(=O)CN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 
6CZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CCOC(=O)C(=O)CN(CC[C@@H](C(=O)O)N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 
6CZ SMILES           "OpenEye OEToolkits" 2.0.4 "CCOC(=O)C(=O)CN(CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6CZ "SYSTEMATIC NAME" ACDLabs              12.01 "5'-{[(3S)-3-amino-3-carboxypropyl](3-ethoxy-2,3-dioxopropyl)amino}-5'-deoxyadenosine"                                                                                 
6CZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-ethoxy-2,3-bis(oxidanylidene)propyl]amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6CZ "Create component" 2016-03-16 EBI  
6CZ "Initial release"  2017-03-15 RCSB 
# 
