data_5YZ
# 
_chem_comp.id                                    5YZ 
_chem_comp.name                                  "6-[(5-cyclopropyl-1~{H}-pyrazol-3-yl)amino]-2-[4-[(3-methyl-4-oxidanyl-phenyl)methyl]piperazin-1-yl]-~{N}-prop-2-ynyl-pyrimidine-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H30 N8 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        486.569 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FIC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5YZ C1  C1  C 0 1 N N N N N N -36.996 9.800  -1.214  -5.011 -1.359 -0.569 C1  5YZ 1  
5YZ C10 C2  C 0 1 N N N N N N -33.114 9.627  -5.962  -0.671 -1.933 1.236  C10 5YZ 2  
5YZ C11 C3  C 0 1 Y N N N N N -31.162 7.505  -1.818  -1.955 3.985  -0.432 C11 5YZ 3  
5YZ C12 C4  C 0 1 N N N N N N -33.655 12.467 -6.127  1.851  -0.644 0.816  C12 5YZ 4  
5YZ C13 C5  C 0 1 N N N N N N -32.220 10.666 -6.630  0.617  -2.418 1.906  C13 5YZ 5  
5YZ C14 C6  C 0 1 Y N N N N N -30.485 8.169  -2.837  -0.721 3.606  0.121  C14 5YZ 6  
5YZ C15 C7  C 0 1 Y N N N N N -29.199 7.621  -2.731  0.088  4.689  0.111  C15 5YZ 7  
5YZ C16 C8  C 0 1 N N N N N N -32.256 12.605 -8.079  3.014  -2.609 1.621  C16 5YZ 8  
5YZ C17 C9  C 0 1 N N N N N N -28.125 8.111  -3.658  1.509  4.740  0.612  C17 5YZ 9  
5YZ C18 C10 C 0 1 Y N N N N N -31.463 11.777 -9.066  4.124  -2.477 0.610  C18 5YZ 10 
5YZ C19 C11 C 0 1 N N N N N N -28.617 8.391  -5.075  1.979  6.037  1.273  C19 5YZ 11 
5YZ C2  C12 C 0 1 Y N N N N N -35.668 9.492  -1.915  -3.901 -0.408 -0.305 C2  5YZ 12 
5YZ C20 C13 C 0 1 N N N N N N -27.935 7.068  -4.742  2.484  5.662  -0.122 C20 5YZ 13 
5YZ C21 C14 C 0 1 Y N N N N N -30.072 11.718 -8.927  4.889  -1.325 0.571  C21 5YZ 14 
5YZ C22 C15 C 0 1 Y N N N N N -32.103 11.098 -10.104 4.379  -3.509 -0.273 C22 5YZ 15 
5YZ C23 C16 C 0 1 Y N N N N N -29.323 10.960 -9.813  5.906  -1.202 -0.355 C23 5YZ 16 
5YZ C24 C17 C 0 1 Y N N N N N -31.337 10.346 -10.991 5.399  -3.393 -1.197 C24 5YZ 17 
5YZ C25 C18 C 0 1 Y N N N N N -29.954 10.285 -10.842 6.161  -2.234 -1.246 C25 5YZ 18 
5YZ C26 C19 C 0 1 N N N N N N -27.830 10.888 -9.663  6.739  0.054  -0.398 C26 5YZ 19 
5YZ C3  C20 C 0 1 N N N N N N -38.239 9.895  0.967   -5.955 -3.605 -0.542 C3  5YZ 20 
5YZ C4  C21 C 0 1 Y N N N N N -34.673 8.691  -1.325  -4.047 0.943  -0.597 C4  5YZ 21 
5YZ C5  C22 C 0 1 N N N N N N -38.816 11.204 0.628   -5.544 -4.962 -0.147 C5  5YZ 22 
5YZ C6  C23 C 0 1 Y N N N N N -34.257 9.799  -3.786  -1.762 0.002  0.463  C6  5YZ 23 
5YZ C7  C24 C 0 1 Y N N N N N -33.462 8.477  -2.009  -2.973 1.799  -0.330 C7  5YZ 24 
5YZ C8  C25 C 0 1 N N N N N N -39.372 12.335 0.384   -5.216 -6.044 0.169  C8  5YZ 25 
5YZ C9  C26 C 0 1 N N N N N N -34.704 11.562 -5.488  0.563  -0.159 0.146  C9  5YZ 26 
5YZ N1  N1  N 0 1 N N N N N N -37.102 9.649  0.054   -4.860 -2.667 -0.282 N1  5YZ 27 
5YZ N2  N2  N 0 1 Y N N N N N -35.430 10.030 -3.137  -2.754 -0.838 0.220  N2  5YZ 28 
5YZ N3  N3  N 0 1 Y N N N N N -33.294 9.030  -3.222  -1.859 1.295  0.189  N3  5YZ 29 
5YZ N4  N4  N 0 1 N N N N N N -34.021 10.343 -5.069  -0.585 -0.485 1.004  N4  5YZ 30 
5YZ N5  N5  N 0 1 N N N N N N -32.472 7.650  -1.442  -3.069 3.154  -0.604 N5  5YZ 31 
5YZ N6  N6  N 0 1 Y N N N N N -30.403 6.631  -1.139  -1.883 5.254  -0.756 N6  5YZ 32 
5YZ N7  N7  N 0 1 N N N N N N -33.056 11.713 -7.232  1.765  -2.092 1.048  N7  5YZ 33 
5YZ N8  N8  N 0 1 Y N N N N N -29.128 6.724  -1.729  -0.602 5.717  -0.427 N8  5YZ 34 
5YZ O1  O1  O 0 1 N N N N N N -37.935 10.236 -1.900  -6.057 -0.956 -1.038 O1  5YZ 35 
5YZ O2  O2  O 0 1 N N N N N N -29.195 9.552  -11.696 7.165  -2.118 -2.154 O2  5YZ 36 
5YZ H1  H1  H 0 1 N N N N N N -33.689 9.080  -6.724  -0.801 -2.447 0.284  H1  5YZ 37 
5YZ H2  H2  H 0 1 N N N N N N -32.501 8.918  -5.386  -1.521 -2.148 1.884  H2  5YZ 38 
5YZ H3  H3  H 0 1 N N N N N N -32.884 12.732 -5.389  2.701  -0.429 0.167  H3  5YZ 39 
5YZ H4  H4  H 0 1 N N N N N N -34.128 13.384 -6.508  1.981  -0.130 1.768  H4  5YZ 40 
5YZ H5  H5  H 0 1 N N N N N N -31.617 10.183 -7.413  0.733  -1.924 2.871  H5  5YZ 41 
5YZ H6  H6  H 0 1 N N N N N N -31.554 11.115 -5.878  0.567  -3.496 2.053  H6  5YZ 42 
5YZ H7  H7  H 0 1 N N N N N N -30.854 8.912  -3.528  -0.464 2.624  0.490  H7  5YZ 43 
5YZ H8  H8  H 0 1 N N N N N N -31.567 13.188 -7.451  2.886  -3.659 1.885  H8  5YZ 44 
5YZ H9  H9  H 0 1 N N N N N N -32.922 13.289 -8.625  3.267  -2.038 2.515  H9  5YZ 45 
5YZ H10 H10 H 0 1 N N N N N N -27.257 8.658  -3.263  1.902  3.803  1.006  H10 5YZ 46 
5YZ H11 H11 H 0 1 N N N N N N -28.102 9.135  -5.701  1.261  6.854  1.346  H11 5YZ 47 
5YZ H12 H12 H 0 1 N N N N N N -29.696 8.416  -5.289  2.682  5.953  2.102  H12 5YZ 48 
5YZ H13 H13 H 0 1 N N N N N N -28.522 6.138  -4.718  3.519  5.333  -0.211 H13 5YZ 49 
5YZ H14 H14 H 0 1 N N N N N N -26.928 6.856  -5.130  2.098  6.233  -0.967 H14 5YZ 50 
5YZ H15 H15 H 0 1 N N N N N N -29.584 12.261 -8.132  4.689  -0.521 1.264  H15 5YZ 51 
5YZ H16 H16 H 0 1 N N N N N N -33.176 11.155 -10.217 3.781  -4.408 -0.240 H16 5YZ 52 
5YZ H17 H17 H 0 1 N N N N N N -31.817 9.809  -11.796 5.596  -4.198 -1.890 H17 5YZ 53 
5YZ H18 H18 H 0 1 N N N N N N -27.363 11.700 -10.241 7.599  -0.058 0.262  H18 5YZ 54 
5YZ H19 H19 H 0 1 N N N N N N -27.563 10.993 -8.601  7.083  0.227  -1.417 H19 5YZ 55 
5YZ H20 H20 H 0 1 N N N N N N -27.470 9.918  -10.037 6.136  0.900  -0.068 H20 5YZ 56 
5YZ H21 H21 H 0 1 N N N N N N -38.997 9.108  0.840   -6.198 -3.594 -1.605 H21 5YZ 57 
5YZ H22 H22 H 0 1 N N N N N N -37.887 9.900  2.009   -6.832 -3.308 0.034  H22 5YZ 58 
5YZ H23 H23 H 0 1 N N N N N N -34.837 8.244  -0.356  -4.965 1.322  -1.019 H23 5YZ 59 
5YZ H24 H24 H 0 1 N N N N N N -39.831 13.269 0.183   -4.923 -7.011 0.451  H24 5YZ 60 
5YZ H25 H25 H 0 1 N N N N N N -35.153 12.061 -4.617  0.613  0.920  -0.001 H25 5YZ 61 
5YZ H26 H26 H 0 1 N N N N N N -35.491 11.322 -6.219  0.447  -0.653 -0.819 H26 5YZ 62 
5YZ H27 H27 H 0 1 N N N N N N -36.276 9.307  0.502   -4.027 -2.988 0.096  H27 5YZ 63 
5YZ H28 H28 H 0 1 N N N N N N -32.764 7.096  -0.662  -3.909 3.527  -0.915 H28 5YZ 64 
5YZ H31 H31 H 0 1 N N N N N N -28.281 9.623  -11.448 6.889  -1.735 -2.999 H31 5YZ 65 
5YZ H29 H29 H 0 1 N N N N N N -28.313 6.214  -1.453  -0.270 6.619  -0.559 H29 5YZ 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5YZ O2  C25 SING N N 1  
5YZ C24 C25 DOUB Y N 2  
5YZ C24 C22 SING Y N 3  
5YZ C25 C23 SING Y N 4  
5YZ C22 C18 DOUB Y N 5  
5YZ C23 C26 SING N N 6  
5YZ C23 C21 DOUB Y N 7  
5YZ C18 C21 SING Y N 8  
5YZ C18 C16 SING N N 9  
5YZ C16 N7  SING N N 10 
5YZ N7  C13 SING N N 11 
5YZ N7  C12 SING N N 12 
5YZ C13 C10 SING N N 13 
5YZ C12 C9  SING N N 14 
5YZ C10 N4  SING N N 15 
5YZ C9  N4  SING N N 16 
5YZ C19 C20 SING N N 17 
5YZ C19 C17 SING N N 18 
5YZ N4  C6  SING N N 19 
5YZ C20 C17 SING N N 20 
5YZ C6  N3  SING Y N 21 
5YZ C6  N2  DOUB Y N 22 
5YZ C17 C15 SING N N 23 
5YZ N3  C7  DOUB Y N 24 
5YZ N2  C2  SING Y N 25 
5YZ C14 C15 DOUB Y N 26 
5YZ C14 C11 SING Y N 27 
5YZ C15 N8  SING Y N 28 
5YZ C7  N5  SING N N 29 
5YZ C7  C4  SING Y N 30 
5YZ C2  C4  DOUB Y N 31 
5YZ C2  C1  SING N N 32 
5YZ O1  C1  DOUB N N 33 
5YZ C11 N5  SING N N 34 
5YZ C11 N6  DOUB Y N 35 
5YZ N8  N6  SING Y N 36 
5YZ C1  N1  SING N N 37 
5YZ N1  C3  SING N N 38 
5YZ C8  C5  TRIP N N 39 
5YZ C5  C3  SING N N 40 
5YZ C10 H1  SING N N 41 
5YZ C10 H2  SING N N 42 
5YZ C12 H3  SING N N 43 
5YZ C12 H4  SING N N 44 
5YZ C13 H5  SING N N 45 
5YZ C13 H6  SING N N 46 
5YZ C14 H7  SING N N 47 
5YZ C16 H8  SING N N 48 
5YZ C16 H9  SING N N 49 
5YZ C17 H10 SING N N 50 
5YZ C19 H11 SING N N 51 
5YZ C19 H12 SING N N 52 
5YZ C20 H13 SING N N 53 
5YZ C20 H14 SING N N 54 
5YZ C21 H15 SING N N 55 
5YZ C22 H16 SING N N 56 
5YZ C24 H17 SING N N 57 
5YZ C26 H18 SING N N 58 
5YZ C26 H19 SING N N 59 
5YZ C26 H20 SING N N 60 
5YZ C3  H21 SING N N 61 
5YZ C3  H22 SING N N 62 
5YZ C4  H23 SING N N 63 
5YZ C8  H24 SING N N 64 
5YZ C9  H25 SING N N 65 
5YZ C9  H26 SING N N 66 
5YZ N1  H27 SING N N 67 
5YZ N5  H28 SING N N 68 
5YZ O2  H31 SING N N 69 
5YZ N8  H29 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5YZ InChI            InChI                1.03  "InChI=1S/C26H30N8O2/c1-3-8-27-25(36)21-15-23(29-24-14-20(31-32-24)19-5-6-19)30-26(28-21)34-11-9-33(10-12-34)16-18-4-7-22(35)17(2)13-18/h1,4,7,13-15,19,35H,5-6,8-12,16H2,2H3,(H,27,36)(H2,28,29,30,31,32)" 
5YZ InChIKey         InChI                1.03  VCHMYWXCLCHLBE-UHFFFAOYSA-N                                                                                                                                                                                 
5YZ SMILES_CANONICAL CACTVS               3.385 "Cc1cc(CN2CCN(CC2)c3nc(Nc4cc([nH]n4)C5CC5)cc(n3)C(=O)NCC#C)ccc1O"                                                                                                                                           
5YZ SMILES           CACTVS               3.385 "Cc1cc(CN2CCN(CC2)c3nc(Nc4cc([nH]n4)C5CC5)cc(n3)C(=O)NCC#C)ccc1O"                                                                                                                                           
5YZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1O)CN2CCN(CC2)c3nc(cc(n3)Nc4cc([nH]n4)C5CC5)C(=O)NCC#C"                                                                                                                                           
5YZ SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1O)CN2CCN(CC2)c3nc(cc(n3)Nc4cc([nH]n4)C5CC5)C(=O)NCC#C"                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           5YZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "6-[(5-cyclopropyl-1~{H}-pyrazol-3-yl)amino]-2-[4-[(3-methyl-4-oxidanyl-phenyl)methyl]piperazin-1-yl]-~{N}-prop-2-ynyl-pyrimidine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5YZ "Create component" 2021-08-31 PDBJ 
5YZ "Initial release"  2022-06-08 RCSB 
5YZ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5YZ 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C26 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
