data_4KZ
# 
_chem_comp.id                                    4KZ 
_chem_comp.name                                  "N-[(1R)-1-(dihydroxyboranyl)-2-phenylethyl]-Nalpha-(pyrazin-2-ylcarbonyl)-L-phenylalaninamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H23 B N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-04-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        418.253 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4KZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4YPL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4KZ C2  C1  C 0 1 Y N N N N N 22.903 19.599 33.619 4.054  -1.620 0.184  C2  4KZ 1  
4KZ C3  C2  C 0 1 Y N N N N N 22.124 20.262 32.686 5.308  -1.574 0.790  C3  4KZ 2  
4KZ C5  C3  C 0 1 Y N N N N N 22.314 18.440 31.241 5.939  -3.435 -0.384 C5  4KZ 3  
4KZ C6  C4  C 0 1 Y N N N N N 23.095 17.777 32.180 4.693  -3.480 -0.994 C6  4KZ 4  
4KZ C7  C5  C 0 1 N N N N N N 23.219 20.221 34.928 3.030  -0.602 0.517  C7  4KZ 5  
4KZ C10 C6  C 0 1 N N S N N N 22.365 21.402 36.880 0.806  0.359  0.260  C10 4KZ 6  
4KZ C11 C7  C 0 1 N N N N N N 22.467 22.917 36.855 1.018  1.600  -0.610 C11 4KZ 7  
4KZ O19 O1  O 0 1 N N N N N N 20.095 20.895 37.075 -0.688 -1.338 -0.417 O19 4KZ 8  
4KZ C18 C8  C 0 1 N N N N N N 21.170 20.981 37.651 -0.567 -0.206 0.002  C18 4KZ 9  
4KZ N20 N1  N 0 1 N N N N N N 21.479 20.515 38.836 -1.661 0.546  0.236  N20 4KZ 10 
4KZ C21 C9  C 0 1 N N R N N N 20.881 19.295 39.295 -2.995 -0.003 -0.015 C21 4KZ 11 
4KZ C22 C10 C 0 1 N N N N N N 22.063 18.336 39.319 -3.915 0.334  1.161  C22 4KZ 12 
4KZ C23 C11 C 0 1 Y N N N N N 21.854 17.056 38.574 -5.288 -0.231 0.903  C23 4KZ 13 
4KZ C24 C12 C 0 1 Y N N N N N 21.473 17.089 37.249 -6.234 0.527  0.238  C24 4KZ 14 
4KZ C25 C13 C 0 1 Y N N N N N 21.316 15.909 36.546 -7.491 0.007  -0.003 C25 4KZ 15 
4KZ C26 C14 C 0 1 Y N N N N N 21.551 14.693 37.148 -7.803 -1.272 0.420  C26 4KZ 16 
4KZ C27 C15 C 0 1 Y N N N N N 21.951 14.663 38.473 -6.857 -2.030 1.083  C27 4KZ 17 
4KZ C28 C16 C 0 1 Y N N N N N 22.111 15.843 39.182 -5.599 -1.510 1.325  C28 4KZ 18 
4KZ B29 B1  B 0 1 N N N N N N 20.275 19.491 40.662 -3.579 0.621  -1.332 B29 4KZ 19 
4KZ O30 O2  O 0 1 N N N N N N 21.281 19.296 41.663 -3.762 2.026  -1.431 O30 4KZ 20 
4KZ O31 O3  O 0 1 N N N N N N 19.769 20.827 40.731 -3.924 -0.219 -2.423 O31 4KZ 21 
4KZ C12 C17 C 0 1 Y N N N N N 22.627 23.401 38.281 2.340  2.236  -0.264 C12 4KZ 22 
4KZ C13 C18 C 0 1 Y N N N N N 21.602 24.055 38.972 2.406  3.196  0.728  C13 4KZ 23 
4KZ C14 C19 C 0 1 Y N N N N N 21.781 24.468 40.293 3.619  3.779  1.046  C14 4KZ 24 
4KZ C15 C20 C 0 1 Y N N N N N 22.990 24.241 40.939 4.765  3.401  0.372  C15 4KZ 25 
4KZ C16 C21 C 0 1 Y N N N N N 24.012 23.597 40.252 4.699  2.440  -0.619 C16 4KZ 26 
4KZ C17 C22 C 0 1 Y N N N N N 23.829 23.175 38.934 3.487  1.854  -0.934 C17 4KZ 27 
4KZ N9  N2  N 0 1 N N N N N N 22.230 20.812 35.564 1.818  -0.647 -0.070 N9  4KZ 28 
4KZ O8  O4  O 0 1 N N N N N N 24.338 20.157 35.378 3.283  0.274  1.321  O8  4KZ 29 
4KZ N1  N3  N 0 1 Y N N N N N 23.366 18.369 33.350 3.780  -2.576 -0.700 N1  4KZ 30 
4KZ N4  N4  N 0 1 Y N N N N N 21.846 19.666 31.515 6.218  -2.484 0.489  N4  4KZ 31 
4KZ H1  H1  H 0 1 N N N N N N 21.743 21.250 32.898 5.536  -0.797 1.504  H1  4KZ 32 
4KZ H2  H2  H 0 1 N N N N N N 22.085 17.970 30.296 6.685  -4.177 -0.628 H2  4KZ 33 
4KZ H3  H3  H 0 1 N N N N N N 23.481 16.791 31.967 4.470  -4.259 -1.708 H3  4KZ 34 
4KZ H4  H4  H 0 1 N N N N N N 23.265 21.001 37.369 0.895  0.632  1.311  H4  4KZ 35 
4KZ H5  H5  H 0 1 N N N N N N 23.339 23.222 36.258 1.018  1.312  -1.661 H5  4KZ 36 
4KZ H6  H6  H 0 1 N N N N N N 21.554 23.345 36.416 0.214  2.313  -0.428 H6  4KZ 37 
4KZ H7  H7  H 0 1 N N N N N N 22.128 21.007 39.417 -1.564 1.452  0.570  H7  4KZ 38 
4KZ H8  H8  H 0 1 N N N N N N 20.118 18.934 38.590 -2.928 -1.086 -0.125 H8  4KZ 39 
4KZ H9  H9  H 0 1 N N N N N N 22.280 18.088 40.369 -3.509 -0.099 2.075  H9  4KZ 40 
4KZ H10 H10 H 0 1 N N N N N N 22.929 18.851 38.877 -3.982 1.416  1.270  H10 4KZ 41 
4KZ H11 H11 H 0 1 N N N N N N 21.297 18.036 36.761 -5.990 1.526  -0.092 H11 4KZ 42 
4KZ H12 H12 H 0 1 N N N N N N 21.005 15.941 35.512 -8.231 0.599  -0.521 H12 4KZ 43 
4KZ H13 H13 H 0 1 N N N N N N 21.425 13.775 36.594 -8.786 -1.678 0.232  H13 4KZ 44 
4KZ H14 H14 H 0 1 N N N N N N 22.139 13.716 38.956 -7.101 -3.029 1.414  H14 4KZ 45 
4KZ H15 H15 H 0 1 N N N N N N 22.437 15.814 40.211 -4.859 -2.104 1.841  H15 4KZ 46 
4KZ H16 H16 H 0 1 N N N N N N 20.900 19.419 42.524 -4.126 2.316  -2.279 H16 4KZ 47 
4KZ H17 H17 H 0 1 N N N N N N 19.381 20.975 41.585 -4.275 0.256  -3.189 H17 4KZ 48 
4KZ H18 H18 H 0 1 N N N N N N 20.660 24.243 38.477 1.511  3.492  1.255  H18 4KZ 49 
4KZ H19 H19 H 0 1 N N N N N N 20.977 24.966 40.815 3.670  4.530  1.820  H19 4KZ 50 
4KZ H20 H20 H 0 1 N N N N N N 23.133 24.561 41.961 5.712  3.857  0.620  H20 4KZ 51 
4KZ H21 H21 H 0 1 N N N N N N 24.958 23.421 40.743 5.594  2.145  -1.146 H21 4KZ 52 
4KZ H22 H22 H 0 1 N N N N N N 24.631 22.668 38.418 3.436  1.100  -1.706 H22 4KZ 53 
4KZ H23 H23 H 0 1 N N N N N N 21.338 20.856 35.115 1.616  -1.347 -0.712 H23 4KZ 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4KZ C5  N4  DOUB Y N 1  
4KZ C5  C6  SING Y N 2  
4KZ N4  C3  SING Y N 3  
4KZ C6  N1  DOUB Y N 4  
4KZ C3  C2  DOUB Y N 5  
4KZ N1  C2  SING Y N 6  
4KZ C2  C7  SING N N 7  
4KZ C7  O8  DOUB N N 8  
4KZ C7  N9  SING N N 9  
4KZ N9  C10 SING N N 10 
4KZ C25 C26 DOUB Y N 11 
4KZ C25 C24 SING Y N 12 
4KZ C11 C10 SING N N 13 
4KZ C11 C12 SING N N 14 
4KZ C10 C18 SING N N 15 
4KZ O19 C18 DOUB N N 16 
4KZ C26 C27 SING Y N 17 
4KZ C24 C23 DOUB Y N 18 
4KZ C18 N20 SING N N 19 
4KZ C12 C17 DOUB Y N 20 
4KZ C12 C13 SING Y N 21 
4KZ C27 C28 DOUB Y N 22 
4KZ C23 C28 SING Y N 23 
4KZ C23 C22 SING N N 24 
4KZ N20 C21 SING N N 25 
4KZ C17 C16 SING Y N 26 
4KZ C13 C14 DOUB Y N 27 
4KZ C21 C22 SING N N 28 
4KZ C21 B29 SING N N 29 
4KZ C16 C15 DOUB Y N 30 
4KZ C14 C15 SING Y N 31 
4KZ B29 O31 SING N N 32 
4KZ B29 O30 SING N N 33 
4KZ C3  H1  SING N N 34 
4KZ C5  H2  SING N N 35 
4KZ C6  H3  SING N N 36 
4KZ C10 H4  SING N N 37 
4KZ C11 H5  SING N N 38 
4KZ C11 H6  SING N N 39 
4KZ N20 H7  SING N N 40 
4KZ C21 H8  SING N N 41 
4KZ C22 H9  SING N N 42 
4KZ C22 H10 SING N N 43 
4KZ C24 H11 SING N N 44 
4KZ C25 H12 SING N N 45 
4KZ C26 H13 SING N N 46 
4KZ C27 H14 SING N N 47 
4KZ C28 H15 SING N N 48 
4KZ O30 H16 SING N N 49 
4KZ O31 H17 SING N N 50 
4KZ C13 H18 SING N N 51 
4KZ C14 H19 SING N N 52 
4KZ C15 H20 SING N N 53 
4KZ C16 H21 SING N N 54 
4KZ C17 H22 SING N N 55 
4KZ N9  H23 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4KZ SMILES           ACDLabs              12.01 "c3(C(=O)NC(C(=O)NC(Cc1ccccc1)B(O)O)Cc2ccccc2)cnccn3"                                                                                                                                
4KZ InChI            InChI                1.03  "InChI=1S/C22H23BN4O4/c28-21(27-20(23(30)31)14-17-9-5-2-6-10-17)18(13-16-7-3-1-4-8-16)26-22(29)19-15-24-11-12-25-19/h1-12,15,18,20,30-31H,13-14H2,(H,26,29)(H,27,28)/t18-,20-/m0/s1" 
4KZ InChIKey         InChI                1.03  ILENEQWIGPQYCQ-ICSRJNTNSA-N                                                                                                                                                          
4KZ SMILES_CANONICAL CACTVS               3.385 "OB(O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc2ccccc2)NC(=O)c3cnccn3"                                                                                                                          
4KZ SMILES           CACTVS               3.385 "OB(O)[CH](Cc1ccccc1)NC(=O)[CH](Cc2ccccc2)NC(=O)c3cnccn3"                                                                                                                            
4KZ SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "B([C@H](Cc1ccccc1)NC(=O)[C@H](Cc2ccccc2)NC(=O)c3cnccn3)(O)O"                                                                                                                        
4KZ SMILES           "OpenEye OEToolkits" 1.9.2 "B(C(Cc1ccccc1)NC(=O)C(Cc2ccccc2)NC(=O)c3cnccn3)(O)O"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4KZ "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(1R)-1-(dihydroxyboranyl)-2-phenylethyl]-Nalpha-(pyrazin-2-ylcarbonyl)-L-phenylalaninamide"    
4KZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(1R)-2-phenyl-1-[[(2S)-3-phenyl-2-(pyrazin-2-ylcarbonylamino)propanoyl]amino]ethyl]boronic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4KZ "Create component" 2015-04-02 PDBJ 
4KZ "Initial release"  2016-03-16 RCSB 
4KZ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            4KZ 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B29 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
