data_THY
# 
_chem_comp.id                                    THY 
_chem_comp.name                                  "C2-1-HYDROXY-2-METHYL-BUTYL-THIAMIN DIPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H28 N4 O8 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-11-30 
_chem_comp.pdbx_modified_date                    2012-01-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        510.439 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     THY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
THY O2B    O2B  O 0  1 N N N 70.246 4.863  4.433  8.318  -1.255 1.311  O2B    THY 1  
THY PB     PB   P 0  1 N N N 68.811 5.037  5.145  7.517  -0.147 0.460  PB     THY 2  
THY O3B    O3B  O 0  1 N N N 67.674 4.079  4.745  7.755  1.305  1.113  O3B    THY 3  
THY O1B    O1B  O 0  1 N N N 68.348 6.442  5.039  8.008  -0.147 -0.936 O1B    THY 4  
THY O3A    O3A  O 0  1 N N N 69.026 4.829  6.782  5.945  -0.492 0.476  O3A    THY 5  
THY PA     PA   P 0  1 N N S 68.907 3.528  7.700  4.699  -0.073 -0.454 PA     THY 6  
THY O1A    O1A  O 0  1 N N N 69.186 4.018  9.074  4.819  1.354  -0.826 O1A    THY 7  
THY O2A    O2A  O 0  1 N N N 67.603 2.859  7.418  4.696  -0.977 -1.786 O2A    THY 8  
THY O5G    O5G  O 0  1 N N N 70.012 2.538  7.108  3.325  -0.304 0.354  O5G    THY 9  
THY C5B    C5B  C 0  1 N N N 71.398 2.769  7.441  2.046  0.072  -0.162 C5B    THY 10 
THY C5A    C5A  C 0  1 N N N 72.224 1.831  6.541  0.961  -0.286 0.855  C5A    THY 11 
THY C5     C5   C 0  1 Y N N 73.719 2.110  6.704  -0.387 0.110  0.311  C5     THY 12 
THY C4     C4   C 0  1 Y N N 74.745 1.304  7.221  -1.159 -0.662 -0.410 C4     THY 13 
THY C4A    C4A  C 0  1 N N N 74.439 -0.102 7.803  -0.761 -2.068 -0.778 C4A    THY 14 
THY S1     S1   S 0  1 Y N N 74.442 3.554  6.149  -1.152 1.674  0.561  S1     THY 15 
THY C2     C2   C 0  1 Y N N 76.061 3.102  6.589  -2.549 1.171  -0.384 C2     THY 16 
THY C8     C8   C -1 1 N N N 77.280 3.898  6.327  -3.628 1.920  -0.640 C8     THY 17 
THY O9     O9   O 0  1 N N N 78.418 3.527  6.716  -4.178 1.919  -1.886 O9     THY 18 
THY C9     C9   C 0  1 N N S 77.121 5.300  5.711  -4.235 2.765  0.450  C9     THY 19 
THY C11    C11  C 0  1 N N N 77.058 6.271  6.907  -3.197 3.771  0.953  C11    THY 20 
THY C10    C10  C 0  1 N N N 78.241 5.712  4.752  -5.448 3.516  -0.102 C10    THY 21 
THY C12    C12  C 0  1 N N N 78.067 7.227  4.530  -6.137 4.276  1.033  C12    THY 22 
THY N3     N3   N 1  1 Y N N 75.995 1.861  7.158  -2.350 -0.117 -0.811 N3     THY 23 
THY C35    C35  C 0  1 N N N 77.162 1.205  7.741  -3.327 -0.847 -1.623 C35    THY 24 
THY "C5'"  C5*  C 0  1 Y N N 77.123 1.409  9.318  -4.155 -1.737 -0.733 "C5'"  THY 25 
THY "C6'"  C6*  C 0  1 Y N N 76.994 0.286  10.185 -3.908 -3.094 -0.660 "C6'"  THY 26 
THY "N1'"  N1*  N 0  1 Y N N 77.044 0.469  11.520 -4.656 -3.846 0.134  "N1'"  THY 27 
THY "C2'"  C2*  C 0  1 Y N N 77.154 1.679  12.140 -5.627 -3.319 0.851  "C2'"  THY 28 
THY C2A    C2A  C 0  1 N N N 77.183 1.820  13.671 -6.451 -4.215 1.740  C2A    THY 29 
THY "N3'"  N3*  N 0  1 Y N N 77.269 2.825  11.378 -5.898 -2.030 0.814  "N3'"  THY 30 
THY "C4'"  C4*  C 0  1 Y N N 77.262 2.681  9.965  -5.189 -1.210 0.045  "C4'"  THY 31 
THY "N4'"  N4*  N 0  1 N N N 77.450 3.840  9.314  -5.473 0.146  0.012  "N4'"  THY 32 
THY H2B    H2B  H 0  1 N N N 70.130 4.829  3.491  9.273  -1.111 1.344  H2B    THY 33 
THY H3B    H3B  H 0  1 N N N 67.143 3.882  5.507  7.456  1.378  2.030  H3B    THY 34 
THY H3A    H3A  H 0  1 N N N 67.137 2.717  8.233  4.620  -1.926 -1.618 H3A    THY 35 
THY H5B1   1H5B H 0  0 N N N 71.590 2.569  8.505  2.031  1.146  -0.347 H5B1   THY 36 
THY H5B2   2H5B H 0  0 N N N 71.669 3.819  7.255  1.860  -0.460 -1.095 H5B2   THY 37 
THY H5A1   1H5A H 0  0 N N N 71.942 2.005  5.492  0.977  -1.360 1.040  H5A1   THY 38 
THY H5A2   2H5A H 0  0 N N N 72.019 0.788  6.824  1.147  0.246  1.788  H5A2   THY 39 
THY H4A1   1H4A H 0  0 N N N 73.486 -0.072 8.352  -1.113 -2.758 -0.011 H4A1   THY 40 
THY H4A2   2H4A H 0  0 N N N 75.247 -0.399 8.487  -1.207 -2.333 -1.737 H4A2   THY 41 
THY H4A3   3H4A H 0  0 N N N 74.367 -0.831 6.983  0.324  -2.131 -0.852 H4A3   THY 42 
THY H9     H9   H 0  1 N N N 78.994 3.434  5.967  -4.893 2.559  -2.001 H9     THY 43 
THY HA     HA   H 0  1 N N N 76.217 5.313  5.085  -4.548 2.124  1.274  HA     THY 44 
THY H111   1H11 H 0  0 N N N 76.145 6.881  6.836  -2.883 4.412  0.129  H111   THY 45 
THY H112   2H11 H 0  0 N N N 77.940 6.928  6.893  -3.636 4.382  1.742  H112   THY 46 
THY H113   3H11 H 0  0 N N N 77.043 5.697  7.845  -2.333 3.236  1.346  H113   THY 47 
THY H101   1H10 H 0  0 N N N 78.185 5.156  3.804  -5.121 4.222  -0.866 H101   THY 48 
THY H102   2H10 H 0  0 N N N 79.227 5.493  5.188  -6.147 2.805  -0.540 H102   THY 49 
THY H121   1H12 H 0  0 N N N 77.133 7.412  3.979  -7.002 4.811  0.639  H121   THY 50 
THY H122   2H12 H 0  0 N N N 78.918 7.612  3.949  -6.464 3.570  1.797  H122   THY 51 
THY H123   3H12 H 0  0 N N N 78.026 7.738  5.503  -5.438 4.988  1.471  H123   THY 52 
THY H351   1H35 H 0  0 N N N 78.084 1.642  7.328  -3.978 -0.138 -2.134 H351   THY 53 
THY H352   2H35 H 0  0 N N N 77.142 0.131  7.504  -2.804 -1.456 -2.360 H352   THY 54 
THY "H6'"  H6*  H 0  1 N N N 76.857 -0.704 9.776  -3.114 -3.536 -1.244 "H6'"  THY 55 
THY H2A1   1H2A H 0  0 N N N 76.292 2.371  14.005 -5.992 -4.270 2.727  H2A1   THY 56 
THY H2A2   2H2A H 0  0 N N N 78.088 2.368  13.971 -7.459 -3.810 1.831  H2A2   THY 57 
THY H2A3   3H2A H 0  0 N N N 77.190 0.821  14.132 -6.498 -5.214 1.305  H2A3   THY 58 
THY "H4'1" 1H4* H 0  0 N N N 78.305 3.797  8.797  -5.048 0.714  -0.649 "H4'1" THY 59 
THY "H4'2" 2H4* H 0  0 N N N 77.497 4.590  9.974  -6.097 0.526  0.649  "H4'2" THY 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
THY O2B   PB     SING N N 1  
THY O2B   H2B    SING N N 2  
THY PB    O3B    SING N N 3  
THY PB    O1B    DOUB N N 4  
THY PB    O3A    SING N N 5  
THY O3B   H3B    SING N N 6  
THY O3A   PA     SING N N 7  
THY PA    O1A    DOUB N N 8  
THY PA    O2A    SING N N 9  
THY PA    O5G    SING N N 10 
THY O2A   H3A    SING N N 11 
THY O5G   C5B    SING N N 12 
THY C5B   C5A    SING N N 13 
THY C5B   H5B1   SING N N 14 
THY C5B   H5B2   SING N N 15 
THY C5A   C5     SING N N 16 
THY C5A   H5A1   SING N N 17 
THY C5A   H5A2   SING N N 18 
THY C5    C4     DOUB Y N 19 
THY C5    S1     SING Y N 20 
THY C4    C4A    SING N N 21 
THY C4    N3     SING Y N 22 
THY C4A   H4A1   SING N N 23 
THY C4A   H4A2   SING N N 24 
THY C4A   H4A3   SING N N 25 
THY S1    C2     SING Y N 26 
THY C2    C8     SING N N 27 
THY C2    N3     DOUB Y N 28 
THY C8    O9     SING N N 29 
THY C8    C9     SING N N 30 
THY O9    H9     SING N N 31 
THY C9    C11    SING N N 32 
THY C9    C10    SING N N 33 
THY C9    HA     SING N N 34 
THY C11   H111   SING N N 35 
THY C11   H112   SING N N 36 
THY C11   H113   SING N N 37 
THY C10   C12    SING N N 38 
THY C10   H101   SING N N 39 
THY C10   H102   SING N N 40 
THY C12   H121   SING N N 41 
THY C12   H122   SING N N 42 
THY C12   H123   SING N N 43 
THY N3    C35    SING N N 44 
THY C35   "C5'"  SING N N 45 
THY C35   H351   SING N N 46 
THY C35   H352   SING N N 47 
THY "C5'" "C6'"  DOUB Y N 48 
THY "C5'" "C4'"  SING Y N 49 
THY "C6'" "N1'"  SING Y N 50 
THY "C6'" "H6'"  SING N N 51 
THY "N1'" "C2'"  DOUB Y N 52 
THY "C2'" C2A    SING N N 53 
THY "C2'" "N3'"  SING Y N 54 
THY C2A   H2A1   SING N N 55 
THY C2A   H2A2   SING N N 56 
THY C2A   H2A3   SING N N 57 
THY "N3'" "C4'"  DOUB Y N 58 
THY "C4'" "N4'"  SING N N 59 
THY "N4'" "H4'1" SING N N 60 
THY "N4'" "H4'2" SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
THY SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCCc1sc([C-](O)C(C)CC)[n+](c1C)Cc2cnc(nc2N)C"                                                                                                                              
THY InChI            InChI                1.03  "InChI=1S/C17H28N4O8P2S/c1-5-10(2)15(22)17-21(9-13-8-19-12(4)20-16(13)18)11(3)14(32-17)6-7-28-31(26,27)29-30(23,24)25/h8,10,22H,5-7,9H2,1-4H3,(H,26,27)(H2,18,19,20)(H2,23,24,25)/t10-/m0/s1" 
THY InChIKey         InChI                1.03  MZVVOGXJVCPANP-JTQLQIEISA-N                                                                                                                                                                   
THY SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)[C-](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N"                                                                                                                      
THY SMILES           CACTVS               3.385 "CC[CH](C)[C-](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N"                                                                                                                       
THY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CC[C@H](C)[C-](c1[n+](c(c(s1)CCO[P@](=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)O"                                                                                                                     
THY SMILES           "OpenEye OEToolkits" 1.7.5 "CCC(C)[C-](c1[n+](c(c(s1)CCOP(=O)(O)OP(=O)(O)O)C)Cc2cnc(nc2N)C)O"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
THY "SYSTEMATIC NAME" ACDLabs              10.04 "(2S)-1-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium-2-yl}-1-hydroxy-2-methylbutan-1-ide" 
THY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-2-[(2S)-1-hydroxy-2-methyl-butyl]-4-methyl-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate"                     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
THY "Create component"   2004-11-30 EBI  
THY "Modify descriptor"  2011-06-04 RCSB 
THY "Modify descriptor"  2012-01-05 RCSB 
THY "Modify coordinates" 2012-01-05 RCSB 
# 
