data_NGY
#

_chem_comp.id                                   NGY
_chem_comp.name                                 2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucopyranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H15 N O9 S"
_chem_comp.mon_nstd_parent_comp_id              NDG
_chem_comp.pdbx_synonyms                        
;2-(acetylamino)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose; N-acetyl-6-O-sulfo-alpha-D-glucosamine;
2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucose; 2-acetamido-2-deoxy-6-O-sulfo-D-glucose;
2-acetamido-2-deoxy-6-O-sulfo-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-06-13
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       301.271
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NGY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2ERM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  NGY  "2-(acetylamino)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose"  PDB  ?  
2  NGY  N-acetyl-6-O-sulfo-alpha-D-glucosamine                     PDB  ?  
3  NGY  2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucose              PDB  ?  
4  NGY  2-acetamido-2-deoxy-6-O-sulfo-D-glucose                    PDB  ?  
5  NGY  2-acetamido-2-deoxy-6-O-sulfo-glucose                      PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NGY  O1   O1    O  0  1  N  Y  N  17.864   7.595   4.385  -1.536   1.007   1.749  O1   NGY   1  
NGY  C1   C1    C  0  1  N  N  S  18.729   6.587   3.904  -1.501   1.030   0.321  C1   NGY   2  
NGY  C2   C2    C  0  1  N  N  R  19.355   7.006   2.565  -2.412  -0.070  -0.230  C2   NGY   3  
NGY  C3   C3    C  0  1  N  N  R  18.458   6.712   1.353  -1.887  -1.434   0.226  C3   NGY   4  
NGY  C4   C4    C  0  1  N  N  S  17.828   5.315   1.470  -0.436  -1.593  -0.241  C4   NGY   5  
NGY  C5   C5    C  0  1  N  N  R  17.057   5.296   2.802   0.399  -0.434   0.310  C5   NGY   6  
NGY  C6   C6    C  0  1  N  N  N  16.211   4.057   3.083   1.836  -0.552  -0.201  C6   NGY   7  
NGY  O3   O3    O  0  1  N  N  N  19.242   6.769   0.173  -2.688  -2.470  -0.344  O3   NGY   8  
NGY  O4   O4    O  0  1  N  N  N  17.121   5.026   0.240   0.088  -2.831   0.241  O4   NGY   9  
NGY  O5   O5    O  0  1  N  N  N  18.051   5.349   3.812  -0.162   0.806  -0.126  O5   NGY  10  
NGY  O6   O6    O  0  1  N  N  N  14.977   4.192   2.429   2.642   0.460   0.405  O6   NGY  11  
NGY  N2   N     N  0  1  N  N  N  19.675   8.429   2.628  -3.774   0.124   0.274  N2   NGY  12  
NGY  C7   C     C  0  1  N  N  N  20.642   9.033   1.930  -4.616   0.962  -0.363  C7   NGY  13  
NGY  O7   O     O  0  1  N  N  N  21.334   8.439   1.107  -4.247   1.554  -1.354  O7   NGY  14  
NGY  C8   CH3   C  0  1  N  N  N  20.848  10.523   2.186  -6.016   1.161   0.156  C8   NGY  15  
NGY  S    S     S  0  1  N  N  N  13.707   3.408   2.962   4.099   0.436  -0.034  S    NGY  16  
NGY  O7A  O7    O  0  1  N  N  N  12.721   3.688   1.962   4.785   1.359   0.801  O7A  NGY  17  
NGY  O8   O8    O  0  1  N  N  N  14.138   2.038   3.045   4.463  -0.933  -0.143  O8   NGY  18  
NGY  O9   O9    O  0  1  N  N  N  13.438   4.041   4.227   4.154   1.009  -1.443  O9   NGY  19  
NGY  H1   H1    H  0  1  N  N  N  19.552   6.453   4.621  -1.845   2.000  -0.036  H1   NGY  20  
NGY  H2   H2    H  0  1  N  N  N  20.264   6.405   2.417  -2.417  -0.027  -1.320  H2   NGY  21  
NGY  H3   H3    H  0  1  N  N  N  17.654   7.461   1.317  -1.928  -1.496   1.314  H3   NGY  22  
NGY  H4   H4    H  0  1  N  N  N  18.530   4.471   1.543  -0.401  -1.581  -1.331  H4   NGY  23  
NGY  H5   H5    H  0  1  N  N  N  16.345   6.134   2.768   0.396  -0.471   1.400  H5   NGY  24  
NGY  H61  H6    H  0  1  N  N  N  16.731   3.162   2.712   2.233  -1.535   0.055  H61  NGY  25  
NGY  H62  H6A   H  0  1  N  N  N  16.049   3.954   4.166   1.848  -0.426  -1.284  H62  NGY  26  
NGY  HO3  HO3   H  0  1  N  Y  N  18.671   6.782  -0.586  -2.411  -3.363  -0.097  HO3  NGY  27  
NGY  HN2  HN    H  0  1  N  N  N  19.127   8.997   3.242  -4.069  -0.350   1.067  HN2  NGY  28  
NGY  H81  HH3   H  0  1  N  N  N  20.898  10.706   3.270  -6.164   0.550   1.047  H81  NGY  29  
NGY  H82  HH3A  H  0  1  N  N  N  21.787  10.849   1.716  -6.165   2.211   0.407  H82  NGY  30  
NGY  H83  HH3B  H  0  1  N  N  N  20.007  11.088   1.757  -6.734   0.866  -0.610  H83  NGY  31  
NGY  HO4  H13   H  0  1  N  Y  N  16.190   4.963   0.417   1.005  -2.998  -0.018  HO4  NGY  32  
NGY  H14  H14   H  0  1  N  N  N  13.379   3.380   4.906   5.044   1.040  -1.821  H14  NGY  33  
NGY  HO1  H15   H  0  1  N  Y  N  17.670   7.436   5.301  -0.981   1.679   2.167  HO1  NGY  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NGY  O1  C1   SING  N  N   1  
NGY  C1  C2   SING  N  N   2  
NGY  C1  O5   SING  N  N   3  
NGY  C1  H1   SING  N  N   4  
NGY  C2  C3   SING  N  N   5  
NGY  C2  N2   SING  N  N   6  
NGY  C2  H2   SING  N  N   7  
NGY  C3  C4   SING  N  N   8  
NGY  C3  O3   SING  N  N   9  
NGY  C3  H3   SING  N  N  10  
NGY  C4  C5   SING  N  N  11  
NGY  C4  O4   SING  N  N  12  
NGY  C4  H4   SING  N  N  13  
NGY  C5  C6   SING  N  N  14  
NGY  C5  O5   SING  N  N  15  
NGY  C5  H5   SING  N  N  16  
NGY  C6  O6   SING  N  N  17  
NGY  C6  H61  SING  N  N  18  
NGY  C6  H62  SING  N  N  19  
NGY  O3  HO3  SING  N  N  20  
NGY  O4  HO4  SING  N  N  21  
NGY  O6  S    SING  N  N  22  
NGY  N2  C7   SING  N  N  23  
NGY  N2  HN2  SING  N  N  24  
NGY  C7  O7   DOUB  N  N  25  
NGY  C7  C8   SING  N  N  26  
NGY  C8  H81  SING  N  N  27  
NGY  C8  H82  SING  N  N  28  
NGY  C8  H83  SING  N  N  29  
NGY  S   O7A  DOUB  N  N  30  
NGY  S   O8   DOUB  N  N  31  
NGY  S   O9   SING  N  N  32  
NGY  O9  H14  SING  N  N  33  
NGY  O1  HO1  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NGY  SMILES            ACDLabs               10.04  "O=S(=O)(O)OCC1OC(O)C(NC(=O)C)C(O)C1O"  
NGY  SMILES_CANONICAL  CACTVS                3.341  "CC(=O)N[C@H]1[C@@H](O)O[C@H](CO[S](O)(=O)=O)[C@@H](O)[C@@H]1O"  
NGY  SMILES            CACTVS                3.341  "CC(=O)N[CH]1[CH](O)O[CH](CO[S](O)(=O)=O)[CH](O)[CH]1O"  
NGY  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O)COS(=O)(=O)O)O)O"  
NGY  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(=O)NC1C(C(C(OC1O)COS(=O)(=O)O)O)O"  
NGY  InChI             InChI                 1.03   "InChI=1S/C8H15NO9S/c1-3(10)9-5-7(12)6(11)4(18-8(5)13)2-17-19(14,15)16/h4-8,11-13H,2H2,1H3,(H,9,10)(H,14,15,16)/t4-,5-,6-,7-,8+/m1/s1"  
NGY  InChIKey          InChI                 1.03   WJFVEEAIYIOATH-PVFLNQBWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NGY  "SYSTEMATIC NAME"                      ACDLabs               10.04  "2-(acetylamino)-2-deoxy-6-O-sulfo-alpha-D-glucopyranose"  
NGY  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R,6S)-5-acetamido-3,4,6-trihydroxy-oxan-2-yl]methyl hydrogen sulfate"  
NGY  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcpNAc[6S]a  
NGY  "COMMON NAME"                          GMML                  1.0    N-acetyl-6-sulfo-a-D-glucopyranose  
NGY  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-GlcpNAc6SO3  
#
_pdbx_chem_comp_related.comp_id            NGY
_pdbx_chem_comp_related.related_comp_id    NDG
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  NGY  C7   NDG  C7   "Carbohydrate core"  
 2  NGY  C1   NDG  C1   "Carbohydrate core"  
 3  NGY  C2   NDG  C2   "Carbohydrate core"  
 4  NGY  C3   NDG  C3   "Carbohydrate core"  
 5  NGY  C4   NDG  C4   "Carbohydrate core"  
 6  NGY  C5   NDG  C5   "Carbohydrate core"  
 7  NGY  C6   NDG  C6   "Carbohydrate core"  
 8  NGY  C8   NDG  C8   "Carbohydrate core"  
 9  NGY  N2   NDG  N2   "Carbohydrate core"  
10  NGY  O7   NDG  O7   "Carbohydrate core"  
11  NGY  O1   NDG  O1   "Carbohydrate core"  
12  NGY  O3   NDG  O3   "Carbohydrate core"  
13  NGY  O4   NDG  O4   "Carbohydrate core"  
14  NGY  O5   NDG  O5   "Carbohydrate core"  
15  NGY  O6   NDG  O6   "Carbohydrate core"  
16  NGY  H1   NDG  H1   "Carbohydrate core"  
17  NGY  HO4  NDG  HO4  "Carbohydrate core"  
18  NGY  HO1  NDG  HO1  "Carbohydrate core"  
19  NGY  H2   NDG  H2   "Carbohydrate core"  
20  NGY  H3   NDG  H3   "Carbohydrate core"  
21  NGY  H4   NDG  H4   "Carbohydrate core"  
22  NGY  H5   NDG  H5   "Carbohydrate core"  
23  NGY  H61  NDG  H61  "Carbohydrate core"  
24  NGY  H62  NDG  H62  "Carbohydrate core"  
25  NGY  H81  NDG  H81  "Carbohydrate core"  
26  NGY  H82  NDG  H82  "Carbohydrate core"  
27  NGY  H83  NDG  H83  "Carbohydrate core"  
28  NGY  HN2  NDG  HN2  "Carbohydrate core"  
29  NGY  HO3  NDG  HO3  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
NGY  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
NGY  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
NGY  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
NGY  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NGY  "Create component"          2008-06-13  RCSB  
NGY  "Modify descriptor"         2011-06-04  RCSB  
NGY  "Other modification"        2020-07-03  RCSB  
NGY  "Modify parent residue"     2020-07-17  RCSB  
NGY  "Modify name"               2020-07-17  RCSB  
NGY  "Modify synonyms"           2020-07-17  RCSB  
NGY  "Modify linking type"       2020-07-17  RCSB  
NGY  "Modify atom id"            2020-07-17  RCSB  
NGY  "Modify component atom id"  2020-07-17  RCSB  
NGY  "Modify leaving atom flag"  2020-07-17  RCSB  
##
