data_MBY
# 
_chem_comp.id                                    MBY 
_chem_comp.name                                  "(2R,3R,4S)-2-(hydroxymethyl)-1-[(4-hydroxythieno[3,2-d]pyrimidin-7-yl)methyl]pyrrolidine-3,4-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H15 N3 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-05 
_chem_comp.pdbx_modified_date                    2013-08-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        297.330 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MBY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4I73 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MBY O6    O6    O 0 1 N N N 0.478 -5.787 21.687 -5.117 0.419  0.686  O6    MBY 1  
MBY C6    C6    C 0 1 Y N N 1.651 -5.752 21.333 -3.944 0.706  0.070  C6    MBY 2  
MBY N1    N1    N 0 1 Y N N 2.213 -6.760 20.616 -3.783 1.856  -0.570 N1    MBY 3  
MBY C2    C2    C 0 1 Y N N 3.519 -6.743 20.254 -2.640 2.143  -1.167 C2    MBY 4  
MBY N3    N3    N 0 1 Y N N 4.294 -5.703 20.530 -1.618 1.324  -1.165 N3    MBY 5  
MBY C4    C4    C 0 1 Y N N 3.845 -4.642 21.210 -1.685 0.127  -0.540 C4    MBY 6  
MBY C5    C5    C 0 1 Y N N 2.480 -4.579 21.655 -2.881 -0.207 0.103  C5    MBY 7  
MBY C9    C9    C 0 1 Y N N 4.554 -3.382 21.606 -0.713 -0.879 -0.423 C9    MBY 8  
MBY C8    C8    C 0 1 Y N N 3.722 -2.532 22.324 -1.077 -1.954 0.260  C8    MBY 9  
MBY S7    S7    S 0 1 Y N N 2.124 -3.165 22.494 -2.725 -1.793 0.843  S7    MBY 10 
MBY C7    C7    C 0 1 N N N 6.013 -3.065 21.297 0.657  -0.745 -1.035 C7    MBY 11 
MBY "N4'" "N4'" N 0 1 N N N 6.261 -2.596 19.901 1.500  0.090  -0.171 "N4'" MBY 12 
MBY "C4'" "C4'" C 0 1 N N R 6.264 -1.119 19.615 2.768  0.442  -0.847 "C4'" MBY 13 
MBY "C5'" "C5'" C 0 1 N N N 5.028 -0.377 20.144 3.121  -0.628 -1.882 "C5'" MBY 14 
MBY "O5'" "O5'" O 0 1 N N N 5.225 0.025  21.517 3.384  -1.865 -1.216 "O5'" MBY 15 
MBY "C3'" "C3'" C 0 1 N N R 6.296 -1.074 18.089 3.858  0.502  0.239  "C3'" MBY 16 
MBY "O3'" "O3'" O 0 1 N N N 7.649 -0.858 17.623 4.403  1.820  0.323  "O3'" MBY 17 
MBY "C2'" "C2'" C 0 1 N N S 5.821 -2.467 17.625 3.136  0.133  1.556  "C2'" MBY 18 
MBY "O2'" "O2'" O 0 1 N N N 6.890 -3.153 16.974 2.752  1.311  2.269  "O2'" MBY 19 
MBY "C1'" "C1'" C 0 1 N N N 5.454 -3.236 18.842 1.889  -0.641 1.062  "C1'" MBY 20 
MBY H2    H2    H 0 1 N N N 3.936 -7.591 19.732 -2.545 3.089  -1.679 H2    MBY 21 
MBY H3    H3    H 0 1 N N N 4.039 -1.583 22.730 -0.444 -2.811 0.437  H3    MBY 22 
MBY H4    H4    H 0 1 N N N 6.606 -3.976 21.464 1.107  -1.733 -1.138 H4    MBY 23 
MBY H5    H5    H 0 1 N N N 6.348 -2.278 21.989 0.572  -0.281 -2.018 H5    MBY 24 
MBY H7    H7    H 0 1 N N N 7.176 -0.657 20.021 2.672  1.413  -1.334 H7    MBY 25 
MBY H8    H8    H 0 1 N N N 4.852 0.517  19.527 2.287  -0.756 -2.571 H8    MBY 26 
MBY H9    H9    H 0 1 N N N 4.154 -1.042 20.084 4.007  -0.318 -2.437 H9    MBY 27 
MBY H10   H10   H 0 1 N N N 4.452 0.482  21.828 3.616  -2.591 -1.812 H10   MBY 28 
MBY H11   H11   H 0 1 N N N 5.612 -0.298 17.715 4.646  -0.220 0.025  H11   MBY 29 
MBY H12   H12   H 0 1 N N N 7.949 -0.002 17.905 5.095  1.918  0.991  H12   MBY 30 
MBY H13   H13   H 0 1 N N N 4.951 -2.359 16.961 3.767  -0.505 2.175  H13   MBY 31 
MBY H14   H14   H 0 1 N N N 6.591 -4.009 16.691 2.295  1.134  3.102  H14   MBY 32 
MBY H15   H15   H 0 1 N N N 4.379 -3.146 19.056 1.091  -0.597 1.803  H15   MBY 33 
MBY H16   H16   H 0 1 N N N 5.718 -4.298 18.732 2.144  -1.675 0.831  H16   MBY 34 
MBY H17   H17   H 0 1 N N N 0.079 -6.594 21.383 -5.159 0.711  1.607  H17   MBY 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MBY "O2'" "C2'" SING N N 1  
MBY "O3'" "C3'" SING N N 2  
MBY "C2'" "C3'" SING N N 3  
MBY "C2'" "C1'" SING N N 4  
MBY "C3'" "C4'" SING N N 5  
MBY "C1'" "N4'" SING N N 6  
MBY "C4'" "N4'" SING N N 7  
MBY "C4'" "C5'" SING N N 8  
MBY "N4'" C7    SING N N 9  
MBY "C5'" "O5'" SING N N 10 
MBY C2    N3    SING Y N 11 
MBY C2    N1    DOUB Y N 12 
MBY N3    C4    DOUB Y N 13 
MBY N1    C6    SING Y N 14 
MBY C4    C9    SING Y N 15 
MBY C4    C5    SING Y N 16 
MBY C7    C9    SING N N 17 
MBY C6    C5    DOUB Y N 18 
MBY C6    O6    SING N N 19 
MBY C9    C8    DOUB Y N 20 
MBY C5    S7    SING Y N 21 
MBY C8    S7    SING Y N 22 
MBY C2    H2    SING N N 23 
MBY C8    H3    SING N N 24 
MBY C7    H4    SING N N 25 
MBY C7    H5    SING N N 26 
MBY "C4'" H7    SING N N 27 
MBY "C5'" H8    SING N N 28 
MBY "C5'" H9    SING N N 29 
MBY "O5'" H10   SING N N 30 
MBY "C3'" H11   SING N N 31 
MBY "O3'" H12   SING N N 32 
MBY "C2'" H13   SING N N 33 
MBY "O2'" H14   SING N N 34 
MBY "C1'" H15   SING N N 35 
MBY "C1'" H16   SING N N 36 
MBY O6    H17   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MBY SMILES           ACDLabs              12.01 "n1c(O)c2scc(c2nc1)CN3C(CO)C(O)C(O)C3"                                                                                                   
MBY InChI            InChI                1.03  "InChI=1S/C12H15N3O4S/c16-3-7-10(18)8(17)2-15(7)1-6-4-20-11-9(6)13-5-14-12(11)19/h4-5,7-8,10,16-18H,1-3H2,(H,13,14,19)/t7-,8+,10-/m1/s1" 
MBY InChIKey         InChI                1.03  UZJHCHSHAYEOTK-KHQFGBGNSA-N                                                                                                              
MBY SMILES_CANONICAL CACTVS               3.370 "OC[C@@H]1[C@@H](O)[C@@H](O)CN1Cc2csc3c(O)ncnc23"                                                                                        
MBY SMILES           CACTVS               3.370 "OC[CH]1[CH](O)[CH](O)CN1Cc2csc3c(O)ncnc23"                                                                                              
MBY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c(s1)c(ncn2)O)CN3C[C@@H]([C@@H]([C@H]3CO)O)O"                                                                                     
MBY SMILES           "OpenEye OEToolkits" 1.7.6 "c1c(c2c(s1)c(ncn2)O)CN3CC(C(C3CO)O)O"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MBY "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4S)-2-(hydroxymethyl)-1-[(4-hydroxythieno[3,2-d]pyrimidin-7-yl)methyl]pyrrolidine-3,4-diol"  
MBY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4S)-2-(hydroxymethyl)-1-[(4-oxidanylthieno[3,2-d]pyrimidin-7-yl)methyl]pyrrolidine-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MBY "Create component" 2012-12-05 PDBJ 
MBY "Initial release"  2013-08-07 RCSB 
# 
