data_KOY
#

_chem_comp.id                                   KOY
_chem_comp.name                                 "5'-O-{3-[3-(2-carboxyphenyl)-3-oxopropyl]phenyl}adenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H25 N5 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-01-03
_chem_comp.pdbx_modified_date                   2019-04-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       519.506
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KOY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6NJ0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KOY  C1   C4   C  0  1  Y  N  N  13.486  -21.397   -7.164   6.011   1.444  -0.389  C1   KOY   1  
KOY  C2   C5   C  0  1  Y  N  N  13.139  -20.365   -7.991   5.851   2.654   0.307  C2   KOY   2  
KOY  C3   C6   C  0  1  Y  N  N  12.982  -20.569   -9.320   6.881   3.606   0.228  C3   KOY   3  
KOY  C4   C8   C  0  1  Y  N  N  13.287  -19.670   -5.944   4.076   1.460   0.667  C4   KOY   4  
KOY  N1   N1   N  0  1  Y  N  N  13.178  -21.796   -9.852   7.956   3.318  -0.498  N1   KOY   5  
KOY  N2   N3   N  0  1  Y  N  N  13.687  -22.641   -7.647   7.121   1.247  -1.095  N2   KOY   6  
KOY  O1   OBK  O  0  1  N  N  N  10.852   -9.787   -6.806  -9.582   0.674  -1.252  O1   KOY   7  
KOY  C5   CBJ  C  0  1  N  N  N  10.863  -11.021   -7.074  -8.272   0.959  -1.383  C5   KOY   8  
KOY  O2   OBL  O  0  1  N  N  N  11.838  -11.494   -7.687  -7.658   0.562  -2.353  O2   KOY   9  
KOY  C6   CBE  C  0  1  Y  N  N   9.758  -11.855   -6.669  -7.581   1.755  -0.346  C6   KOY  10  
KOY  C7   CBF  C  0  1  Y  N  N   8.553  -11.714   -7.344  -8.077   3.001   0.026  C7   KOY  11  
KOY  C8   CBG  C  0  1  Y  N  N   7.425  -12.455   -6.985  -7.428   3.743   0.997  C8   KOY  12  
KOY  C9   CBH  C  0  1  Y  N  N   7.472  -13.333   -5.934  -6.284   3.254   1.604  C9   KOY  13  
KOY  C10  CBI  C  0  1  Y  N  N   8.700  -13.525   -5.266  -5.776   2.019   1.249  C10  KOY  14  
KOY  C11  CBD  C  0  1  Y  N  N   9.835  -12.729   -5.544  -6.420   1.254   0.277  C11  KOY  15  
KOY  C12  CBB  C  0  1  N  N  N  11.072  -12.880   -4.824  -5.887  -0.065  -0.102  C12  KOY  16  
KOY  O3   OBC  O  0  1  N  N  N  11.860  -11.938   -4.663  -6.506  -0.773  -0.866  O3   KOY  17  
KOY  C13  CBA  C  0  1  N  N  N  11.314  -14.079   -3.889  -4.570  -0.536   0.461  C13  KOY  18  
KOY  C14  CAT  C  0  1  N  N  N  12.766  -14.176   -3.392  -4.249  -1.927  -0.087  C14  KOY  19  
KOY  C15  CAU  C  0  1  Y  N  N  12.943  -15.275   -2.490  -2.932  -2.398   0.476  C15  KOY  20  
KOY  C16  CAV  C  0  1  Y  N  N  13.097  -16.572   -2.990  -1.756  -2.111  -0.189  C16  KOY  21  
KOY  C17  CAZ  C  0  1  Y  N  N  12.999  -15.109   -1.093  -2.903  -3.111   1.660  C17  KOY  22  
KOY  C18  CAY  C  0  1  Y  N  N  13.122  -16.195   -0.268  -1.697  -3.544   2.179  C18  KOY  23  
KOY  C19  CAX  C  0  1  Y  N  N  13.274  -17.475   -0.788  -0.518  -3.264   1.516  C19  KOY  24  
KOY  C20  CAW  C  0  1  Y  N  N  13.263  -17.686   -2.163  -0.544  -2.544   0.330  C20  KOY  25  
KOY  O4   O5*  O  0  1  N  N  N  13.436  -18.934   -2.753   0.615  -2.264  -0.322  O4   KOY  26  
KOY  C21  C5*  C  0  1  N  N  N  14.399  -19.775   -2.079   1.824  -2.741   0.271  C21  KOY  27  
KOY  C22  C4*  C  0  1  N  N  R  14.652  -21.099   -2.806   3.014  -2.332  -0.599  C22  KOY  28  
KOY  O5   O4*  O  0  1  N  N  N  13.502  -21.448   -3.498   3.166  -0.902  -0.579  O5   KOY  29  
KOY  C23  C3*  C  0  1  N  N  S  15.803  -20.896   -3.799   4.312  -2.941  -0.033  C23  KOY  30  
KOY  O6   O3*  O  0  1  N  N  N  17.078  -20.930   -3.130   4.925  -3.797  -0.998  O6   KOY  31  
KOY  C24  C2*  C  0  1  N  N  R  15.565  -22.055   -4.677   5.213  -1.716   0.255  C24  KOY  32  
KOY  O7   O2*  O  0  1  N  N  N  16.051  -23.361   -4.033   6.565  -1.977  -0.124  O7   KOY  33  
KOY  C25  C1*  C  0  1  N  N  R  13.983  -21.929   -4.788   4.581  -0.627  -0.657  C25  KOY  34  
KOY  N3   N9   N  0  1  Y  N  N  13.606  -20.963   -5.904   4.877   0.712  -0.143  N3   KOY  35  
KOY  N4   N7   N  0  1  Y  N  N  13.006  -19.294   -7.208   4.649   2.599   0.930  N4   KOY  36  
KOY  C26  C2   C  0  1  Y  N  N  13.522  -22.852   -9.047   8.062   2.166  -1.136  C26  KOY  37  
KOY  N5   N6   N  0  1  N  N  N  12.635  -19.551  -10.117   6.779   4.816   0.892  N5   KOY  38  
KOY  H1   H1   H  0  1  N  N  N  13.258  -19.016   -5.085   3.109   1.153   1.037  H1   KOY  39  
KOY  H2   H2   H  0  1  N  N  N  11.646   -9.383   -7.137  -9.990   0.151  -1.956  H2   KOY  40  
KOY  H3   H3   H  0  1  N  N  N   8.486  -11.016   -8.165  -8.969   3.390  -0.443  H3   KOY  41  
KOY  H4   H4   H  0  1  N  N  N   6.507  -12.335   -7.541  -7.816   4.709   1.282  H4   KOY  42  
KOY  H5   H5   H  0  1  N  N  N   6.587  -13.868   -5.623  -5.786   3.842   2.360  H5   KOY  43  
KOY  H6   H6   H  0  1  N  N  N   8.775  -14.303   -4.520  -4.883   1.645   1.727  H6   KOY  44  
KOY  H7   H7   H  0  1  N  N  N  10.652  -13.981   -3.016  -3.782   0.160   0.172  H7   KOY  45  
KOY  H8   H8   H  0  1  N  N  N  11.069  -15.002   -4.434  -4.635  -0.580   1.548  H8   KOY  46  
KOY  H9   H9   H  0  1  N  N  N  13.431  -14.314   -4.257  -5.037  -2.623   0.202  H9   KOY  47  
KOY  H10  H10  H  0  1  N  N  N  13.029  -13.242   -2.873  -4.184  -1.883  -1.174  H10  KOY  48  
KOY  H11  H11  H  0  1  N  N  N  13.087  -16.719   -4.060  -1.779  -1.551  -1.112  H11  KOY  49  
KOY  H12  H12  H  0  1  N  N  N  12.945  -14.117   -0.669  -3.824  -3.330   2.181  H12  KOY  50  
KOY  H13  H13  H  0  1  N  N  N  13.101  -16.055    0.803  -1.677  -4.100   3.105  H13  KOY  51  
KOY  H14  H14  H  0  1  N  N  N  13.402  -18.313   -0.119   0.424  -3.602   1.922  H14  KOY  52  
KOY  H15  H15  H  0  1  N  N  N  14.024  -19.996   -1.069   1.936  -2.311   1.266  H15  KOY  53  
KOY  H16  H16  H  0  1  N  N  N  15.351  -19.228   -2.006   1.787  -3.828   0.347  H16  KOY  54  
KOY  H17  H17  H  0  1  N  N  N  14.933  -21.870   -2.074   2.860  -2.674  -1.623  H17  KOY  55  
KOY  H18  H18  H  0  1  N  N  N  15.664  -19.953   -4.349   4.106  -3.490   0.886  H18  KOY  56  
KOY  H19  H19  H  0  1  N  N  N  17.169  -20.159   -2.582   5.746  -4.208  -0.695  H19  KOY  57  
KOY  H20  H20  H  0  1  N  N  N  16.023  -21.915   -5.667   5.154  -1.427   1.304  H20  KOY  58  
KOY  H21  H21  H  0  1  N  N  N  17.000  -23.365   -4.001   6.973  -2.711   0.356  H21  KOY  59  
KOY  H22  H22  H  0  1  N  N  N  13.566  -22.923   -5.006   4.935  -0.733  -1.683  H22  KOY  60  
KOY  H23  H23  H  0  1  N  N  N  13.667  -23.835   -9.470   8.952   1.973  -1.715  H23  KOY  61  
KOY  H24  H24  H  0  1  N  N  N  12.567  -19.874  -11.061   5.989   5.015   1.419  H24  KOY  62  
KOY  H25  H25  H  0  1  N  N  N  11.751  -19.186   -9.825   7.496   5.465   0.830  H25  KOY  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KOY  N5   C3   SING  N  N   1  
KOY  N1   C3   DOUB  Y  N   2  
KOY  N1   C26  SING  Y  N   3  
KOY  C3   C2   SING  Y  N   4  
KOY  C26  N2   DOUB  Y  N   5  
KOY  C2   N4   SING  Y  N   6  
KOY  C2   C1   DOUB  Y  N   7  
KOY  O2   C5   DOUB  N  N   8  
KOY  N2   C1   SING  Y  N   9  
KOY  C7   C8   DOUB  Y  N  10  
KOY  C7   C6   SING  Y  N  11  
KOY  N4   C4   DOUB  Y  N  12  
KOY  C1   N3   SING  Y  N  13  
KOY  C5   O1   SING  N  N  14  
KOY  C5   C6   SING  N  N  15  
KOY  C8   C9   SING  Y  N  16  
KOY  C6   C11  DOUB  Y  N  17  
KOY  C4   N3   SING  Y  N  18  
KOY  C9   C10  DOUB  Y  N  19  
KOY  N3   C25  SING  N  N  20  
KOY  C11  C10  SING  Y  N  21  
KOY  C11  C12  SING  N  N  22  
KOY  C12  O3   DOUB  N  N  23  
KOY  C12  C13  SING  N  N  24  
KOY  C25  C24  SING  N  N  25  
KOY  C25  O5   SING  N  N  26  
KOY  C24  O7   SING  N  N  27  
KOY  C24  C23  SING  N  N  28  
KOY  C13  C14  SING  N  N  29  
KOY  C23  O6   SING  N  N  30  
KOY  C23  C22  SING  N  N  31  
KOY  O5   C22  SING  N  N  32  
KOY  C14  C15  SING  N  N  33  
KOY  C16  C15  DOUB  Y  N  34  
KOY  C16  C20  SING  Y  N  35  
KOY  C22  C21  SING  N  N  36  
KOY  O4   C20  SING  N  N  37  
KOY  O4   C21  SING  N  N  38  
KOY  C15  C17  SING  Y  N  39  
KOY  C20  C19  DOUB  Y  N  40  
KOY  C17  C18  DOUB  Y  N  41  
KOY  C19  C18  SING  Y  N  42  
KOY  C4   H1   SING  N  N  43  
KOY  O1   H2   SING  N  N  44  
KOY  C7   H3   SING  N  N  45  
KOY  C8   H4   SING  N  N  46  
KOY  C9   H5   SING  N  N  47  
KOY  C10  H6   SING  N  N  48  
KOY  C13  H7   SING  N  N  49  
KOY  C13  H8   SING  N  N  50  
KOY  C14  H9   SING  N  N  51  
KOY  C14  H10  SING  N  N  52  
KOY  C16  H11  SING  N  N  53  
KOY  C17  H12  SING  N  N  54  
KOY  C18  H13  SING  N  N  55  
KOY  C19  H14  SING  N  N  56  
KOY  C21  H15  SING  N  N  57  
KOY  C21  H16  SING  N  N  58  
KOY  C22  H17  SING  N  N  59  
KOY  C23  H18  SING  N  N  60  
KOY  O6   H19  SING  N  N  61  
KOY  C24  H20  SING  N  N  62  
KOY  O7   H21  SING  N  N  63  
KOY  C25  H22  SING  N  N  64  
KOY  C26  H23  SING  N  N  65  
KOY  N5   H24  SING  N  N  66  
KOY  N5   H25  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KOY  SMILES            ACDLabs               12.01  "c12n(cnc1c(ncn2)N)C5OC(COc4cc(CCC(c3c(C(O)=O)cccc3)=O)ccc4)C(O)C5O"  
KOY  InChI             InChI                 1.03   "InChI=1S/C26H25N5O7/c27-23-20-24(29-12-28-23)31(13-30-20)25-22(34)21(33)19(38-25)11-37-15-5-3-4-14(10-15)8-9-18(32)16-6-1-2-7-17(16)26(35)36/h1-7,10,12-13,19,21-22,25,33-34H,8-9,11H2,(H,35,36)(H2,27,28,29)/t19-,21-,22-,25-/m1/s1"  
KOY  InChIKey          InChI                 1.03   GEMGRSMVWNUQGG-PTGPVQHPSA-N  
KOY  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](COc4cccc(CCC(=O)c5ccccc5C(O)=O)c4)[C@@H](O)[C@H]3O"  
KOY  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](COc4cccc(CCC(=O)c5ccccc5C(O)=O)c4)[CH](O)[CH]3O"  
KOY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc(c(c1)C(=O)CCc2cccc(c2)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)C(=O)O"  
KOY  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc(c(c1)C(=O)CCc2cccc(c2)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)C(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KOY  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-{3-[3-(2-carboxyphenyl)-3-oxopropyl]phenyl}adenosine"  
KOY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[3-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]phenyl]propanoyl]benzoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KOY  "Create component"  2019-01-03  RCSB  
KOY  "Initial release"   2019-04-10  RCSB  
##
