data_GYY
# 
_chem_comp.id                                    GYY 
_chem_comp.name                                  "N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]-2-(naphthalen-1-yl)acetamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H34 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-06-05 
_chem_comp.pdbx_modified_date                    2018-08-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        370.532 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GYY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6DM1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GYY CAA  C1  C 0 1 Y N N 164.298 160.376 113.438 7.895   1.967  0.813  CAA  GYY 1  
GYY CAB  C2  C 0 1 Y N N 164.106 160.911 112.165 6.709   2.025  0.083  CAB  GYY 2  
GYY CAD  C3  C 0 1 Y N N 163.518 160.797 114.500 8.524   0.780  1.034  CAD  GYY 3  
GYY CAE  C4  C 0 1 Y N N 163.123 161.869 111.958 6.145   0.897  -0.429 CAE  GYY 4  
GYY CAF  C5  C 0 1 N N N 162.956 162.421 110.545 4.863   0.982  -1.216 CAF  GYY 5  
GYY CAG  C6  C 0 1 N N N 161.684 161.955 109.824 3.694   0.717  -0.302 CAG  GYY 6  
GYY CAI  C7  C 0 1 N N N 162.707 162.033 107.492 1.302   0.484  0.099  CAI  GYY 7  
GYY CAJ  C8  C 0 1 N N N 162.173 162.755 106.287 -0.000  0.570  -0.700 CAJ  GYY 8  
GYY CAK  C9  C 0 1 N N N 161.532 161.813 105.317 -1.186  0.301  0.228  CAK  GYY 9  
GYY CAM  C10 C 0 1 N N N 161.544 162.081 102.976 -3.600  0.130  0.322  CAM  GYY 10 
GYY CAN  C11 C 0 1 N N N 162.404 162.128 101.715 -4.880  0.224  -0.511 CAN  GYY 11 
GYY CAO  C12 C 0 1 N N N 161.618 161.862 100.429 -6.092  -0.039 0.386  CAO  GYY 12 
GYY CAP  C13 C 0 1 N N N 162.490 161.902 99.180  -7.372  0.055  -0.447 CAP  GYY 13 
GYY CAR  C14 C 0 1 N N N 162.485 161.706 96.828  -9.785  -0.116 -0.353 CAR  GYY 14 
GYY CAS  C15 C 0 1 N N N 161.743 162.039 95.532  -10.972 -0.384 0.575  CAS  GYY 15 
GYY CAT  C16 C 0 1 N N N 162.436 161.506 94.275  -12.274 -0.298 -0.224 CAT  GYY 16 
GYY CAV  C17 C 0 1 Y N N 162.515 161.781 114.291 7.969   -0.407 0.526  CAV  GYY 17 
GYY CAW  C18 C 0 1 Y N N 162.320 162.311 113.050 6.765   -0.347 -0.221 CAW  GYY 18 
GYY CAX  C19 C 0 1 Y N N 161.718 162.209 115.385 8.589   -1.650 0.734  CAX  GYY 19 
GYY CAY  C20 C 0 1 Y N N 161.312 163.299 112.860 6.213   -1.532 -0.734 CAY  GYY 20 
GYY CAZ  C21 C 0 1 Y N N 160.736 163.170 115.190 8.022   -2.779 0.226  CAZ  GYY 21 
GYY CBA  C22 C 0 1 Y N N 160.533 163.711 113.928 6.842   -2.719 -0.513 CBA  GYY 22 
GYY NAH  N1  N 0 1 N N N 161.604 161.786 108.382 2.438   0.741  -0.790 NAH  GYY 23 
GYY NAL  N2  N 0 1 N N N 162.359 161.813 104.140 -2.437  0.383  -0.539 NAL  GYY 24 
GYY NAQ  N3  N 0 1 N N N 161.668 162.006 97.990  -8.535  -0.198 0.414  NAQ  GYY 25 
GYY NAU  N4  N 0 1 N N N 163.501 162.407 93.870  -13.413 -0.557 0.667  NAU  GYY 26 
GYY OAC  O1  O 0 1 N N N 160.711 161.719 110.449 3.884   0.483  0.873  OAC  GYY 27 
GYY HAA1 H1  H 0 0 N N N 165.061 159.628 113.596 8.324   2.877  1.204  HAA1 GYY 28 
GYY HAB1 H2  H 0 0 N N N 164.721 160.581 111.341 6.230   2.980  -0.078 HAB1 GYY 29 
GYY HAD1 H3  H 0 0 N N N 163.671 160.379 115.484 9.445   0.751  1.598  HAD1 GYY 30 
GYY HAF1 H4  H 0 0 N N N 163.824 162.105 109.948 4.767   1.978  -1.649 HAF1 GYY 31 
GYY HAF2 H5  H 0 0 N N N 162.933 163.519 110.606 4.876   0.239  -2.013 HAF2 GYY 32 
GYY HAI1 H6  H 0 0 N N N 163.161 161.079 107.186 1.289   1.227  0.896  HAI1 GYY 33 
GYY HAI2 H7  H 0 0 N N N 163.462 162.654 107.996 1.398   -0.512 0.531  HAI2 GYY 34 
GYY HAJ2 H8  H 0 0 N N N 163.003 163.273 105.785 -0.096  1.565  -1.133 HAJ2 GYY 35 
GYY HAJ1 H9  H 0 0 N N N 161.425 163.492 106.615 0.013   -0.174 -1.497 HAJ1 GYY 36 
GYY HAK1 H10 H 0 0 N N N 160.517 162.156 105.068 -1.091  -0.695 0.661  HAK1 GYY 37 
GYY HAK2 H11 H 0 0 N N N 161.482 160.801 105.746 -1.199  1.044  1.025  HAK2 GYY 38 
GYY HAM2 H12 H 0 0 N N N 161.038 163.049 103.104 -3.630  0.872  1.120  HAM2 GYY 39 
GYY HAM1 H13 H 0 0 N N N 160.792 161.285 102.871 -3.521  -0.867 0.755  HAM1 GYY 40 
GYY HAN2 H14 H 0 0 N N N 163.194 161.368 101.804 -4.959  1.221  -0.944 HAN2 GYY 41 
GYY HAN1 H15 H 0 0 N N N 162.862 163.126 101.643 -4.850  -0.517 -1.309 HAN1 GYY 42 
GYY HAO2 H16 H 0 0 N N N 160.833 162.627 100.333 -6.013  -1.036 0.819  HAO2 GYY 43 
GYY HAO1 H17 H 0 0 N N N 161.154 160.867 100.501 -6.122  0.702  1.184  HAO1 GYY 44 
GYY HAP1 H18 H 0 0 N N N 163.089 160.981 99.127  -7.451  1.052  -0.880 HAP1 GYY 45 
GYY HAP2 H19 H 0 0 N N N 163.160 162.772 99.234  -7.342  -0.687 -1.245 HAP2 GYY 46 
GYY HAR1 H20 H 0 0 N N N 162.737 160.635 96.833  -9.772  -0.859 -1.150 HAR1 GYY 47 
GYY HAR2 H21 H 0 0 N N N 163.409 162.300 96.876  -9.881  0.880  -0.786 HAR2 GYY 48 
GYY HAS2 H22 H 0 0 N N N 161.663 163.133 95.448  -10.876 -1.380 1.008  HAS2 GYY 49 
GYY HAS1 H23 H 0 0 N N N 160.735 161.601 95.586  -10.985 0.359  1.372  HAS1 GYY 50 
GYY HAT2 H24 H 0 0 N N N 161.700 161.424 93.461  -12.370 0.697  -0.656 HAT2 GYY 51 
GYY HAT1 H25 H 0 0 N N N 162.860 160.514 94.487  -12.261 -1.041 -1.021 HAT1 GYY 52 
GYY HAX1 H26 H 0 0 N N N 161.876 161.788 116.367 9.510   -1.710 1.294  HAX1 GYY 53 
GYY HAY1 H27 H 0 0 N N N 161.155 163.728 111.881 5.295   -1.502 -1.301 HAY1 GYY 54 
GYY HAZ1 H28 H 0 0 N N N 160.129 163.497 116.021 8.501   -3.733 0.388  HAZ1 GYY 55 
GYY HBA1 H29 H 0 0 N N N 159.765 164.456 113.779 6.416   -3.629 -0.908 HBA1 GYY 56 
GYY HAH1 H30 H 0 0 N N N 160.737 161.482 107.988 2.286   0.928  -1.730 HAH1 GYY 57 
GYY H1   H31 H 0 1 N N N 162.797 160.920 104.041 -2.422  -0.251 -1.323 H1   GYY 58 
GYY H2   H33 H 0 1 N N N 161.303 162.934 97.914  -8.550  0.436  1.198  H2   GYY 59 
GYY H3   H35 H 0 1 N N N 163.946 162.050 93.049  -13.410 0.079  1.451  H3   GYY 60 
GYY HAU2 H36 H 0 0 N N N 163.118 163.310 93.675  -14.285 -0.505 0.163  HAU2 GYY 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GYY NAU CAT  SING N N 1  
GYY CAT CAS  SING N N 2  
GYY CAS CAR  SING N N 3  
GYY CAR NAQ  SING N N 4  
GYY NAQ CAP  SING N N 5  
GYY CAP CAO  SING N N 6  
GYY CAO CAN  SING N N 7  
GYY CAN CAM  SING N N 8  
GYY CAM NAL  SING N N 9  
GYY NAL CAK  SING N N 10 
GYY CAK CAJ  SING N N 11 
GYY CAJ CAI  SING N N 12 
GYY CAI NAH  SING N N 13 
GYY NAH CAG  SING N N 14 
GYY CAG OAC  DOUB N N 15 
GYY CAG CAF  SING N N 16 
GYY CAF CAE  SING N N 17 
GYY CAE CAB  DOUB Y N 18 
GYY CAE CAW  SING Y N 19 
GYY CAB CAA  SING Y N 20 
GYY CAY CAW  DOUB Y N 21 
GYY CAY CBA  SING Y N 22 
GYY CAW CAV  SING Y N 23 
GYY CAA CAD  DOUB Y N 24 
GYY CBA CAZ  DOUB Y N 25 
GYY CAV CAD  SING Y N 26 
GYY CAV CAX  DOUB Y N 27 
GYY CAZ CAX  SING Y N 28 
GYY CAA HAA1 SING N N 29 
GYY CAB HAB1 SING N N 30 
GYY CAD HAD1 SING N N 31 
GYY CAF HAF1 SING N N 32 
GYY CAF HAF2 SING N N 33 
GYY CAI HAI1 SING N N 34 
GYY CAI HAI2 SING N N 35 
GYY CAJ HAJ2 SING N N 36 
GYY CAJ HAJ1 SING N N 37 
GYY CAK HAK1 SING N N 38 
GYY CAK HAK2 SING N N 39 
GYY CAM HAM2 SING N N 40 
GYY CAM HAM1 SING N N 41 
GYY CAN HAN2 SING N N 42 
GYY CAN HAN1 SING N N 43 
GYY CAO HAO2 SING N N 44 
GYY CAO HAO1 SING N N 45 
GYY CAP HAP1 SING N N 46 
GYY CAP HAP2 SING N N 47 
GYY CAR HAR1 SING N N 48 
GYY CAR HAR2 SING N N 49 
GYY CAS HAS2 SING N N 50 
GYY CAS HAS1 SING N N 51 
GYY CAT HAT2 SING N N 52 
GYY CAT HAT1 SING N N 53 
GYY CAX HAX1 SING N N 54 
GYY CAY HAY1 SING N N 55 
GYY CAZ HAZ1 SING N N 56 
GYY CBA HBA1 SING N N 57 
GYY NAH HAH1 SING N N 58 
GYY NAL H1   SING N N 59 
GYY NAQ H2   SING N N 60 
GYY NAU H3   SING N N 61 
GYY NAU HAU2 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GYY SMILES           ACDLabs              12.01 "c1cc2ccccc2c(c1)CC(=O)NCCCNCCCCNCCCN"                                                                                                              
GYY InChI            InChI                1.03  "InChI=1S/C22H34N4O/c23-12-6-15-24-13-3-4-14-25-16-7-17-26-22(27)18-20-10-5-9-19-8-1-2-11-21(19)20/h1-2,5,8-11,24-25H,3-4,6-7,12-18,23H2,(H,26,27)" 
GYY InChIKey         InChI                1.03  ZUINPPQIQARTKX-UHFFFAOYSA-N                                                                                                                         
GYY SMILES_CANONICAL CACTVS               3.385 "NCCCNCCCCNCCCNC(=O)Cc1cccc2ccccc12"                                                                                                                
GYY SMILES           CACTVS               3.385 "NCCCNCCCCNCCCNC(=O)Cc1cccc2ccccc12"                                                                                                                
GYY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)cccc2CC(=O)NCCCNCCCCNCCCN"                                                                                                              
GYY SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)cccc2CC(=O)NCCCNCCCCNCCCN"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GYY "SYSTEMATIC NAME" ACDLabs              12.01 "N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]-2-(naphthalen-1-yl)acetamide" 
GYY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[3-[4-(3-azanylpropylamino)butylamino]propyl]-2-naphthalen-1-yl-ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GYY "Create component" 2018-06-05 RCSB 
GYY "Initial release"  2018-08-22 RCSB 
# 
