data_ATY
# 
_chem_comp.id                                    ATY 
_chem_comp.name                                  "3'-O-ACETYLTHYMIDINE-5'-DIPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H18 N2 O12 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-03-09 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        444.225 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ATY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1DZT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ATY PA     PA   P 0 1 N N R 14.108 54.273 43.068 -0.164 0.079  -3.060 PA     ATY 1  
ATY O1A    O1A  O 0 1 N N N 14.054 55.072 41.815 1.128  0.085  -3.779 O1A    ATY 2  
ATY O2A    O2A  O 0 1 N N N 12.780 54.242 43.746 -0.638 -1.440 -2.820 O2A    ATY 3  
ATY O3A    O3A  O 0 1 N N N 15.255 54.922 44.074 -1.270 0.854  -3.937 O3A    ATY 4  
ATY PB     PB   P 0 1 N N N 16.800 55.237 43.989 -1.391 0.066  -5.336 PB     ATY 5  
ATY O1B    O1B  O 0 1 N N N 17.113 54.674 42.520 -1.807 -1.330 -5.080 O1B    ATY 6  
ATY O2B    O2B  O 0 1 N N N 17.096 56.700 44.055 -2.485 0.791  -6.267 O2B    ATY 7  
ATY O3B    O3B  O 0 1 N N N 17.600 54.491 45.032 0.036  0.072  -6.080 O3B    ATY 8  
ATY "O5'"  O5*  O 0 1 N N N 14.620 52.781 42.795 0.007  0.817  -1.640 "O5'"  ATY 9  
ATY "C5'"  C5*  C 0 1 N N N 14.781 51.752 43.812 0.996  0.086  -0.912 "C5'"  ATY 10 
ATY "C4'"  C4*  C 0 1 N N R 14.804 50.408 43.075 1.209  0.739  0.455  "C4'"  ATY 11 
ATY "O4'"  O4*  O 0 1 N N N 13.452 50.083 42.562 -0.015 0.712  1.222  "O4'"  ATY 12 
ATY "C3'"  C3*  C 0 1 N N S 15.742 50.411 41.845 2.217  -0.074 1.296  "C3'"  ATY 13 
ATY "O3'"  O3*  O 0 1 N N N 16.410 49.133 41.638 3.540  0.518  1.220  "O3'"  ATY 14 
ATY CR     CR   C 0 1 N N N 17.631 49.176 40.896 4.630  -0.251 1.364  CR     ATY 15 
ATY OR     OR   O 0 1 N N N 18.405 48.192 40.722 4.510  -1.437 1.559  OR     ATY 16 
ATY CHR    CHR  C 0 1 N N N 18.090 50.445 40.204 6.003  0.364  1.285  CHR    ATY 17 
ATY "C2'"  C2*  C 0 1 N N N 14.723 50.683 40.728 1.666  0.015  2.737  "C2'"  ATY 18 
ATY "C1'"  C1*  C 0 1 N N R 13.509 49.885 41.150 0.390  0.874  2.599  "C1'"  ATY 19 
ATY N1     N1   N 0 1 N N N 12.253 50.246 40.386 -0.653 0.386  3.502  N1     ATY 20 
ATY C2     C2   C 0 1 N N N 11.400 49.247 39.907 -1.111 -0.872 3.374  C2     ATY 21 
ATY O2     O2   O 0 1 N N N 11.593 48.047 40.066 -0.647 -1.593 2.511  O2     ATY 22 
ATY N3     N3   N 0 1 N N N 10.297 49.737 39.217 -2.066 -1.348 4.194  N3     ATY 23 
ATY C4     C4   C 0 1 N N N 9.945  51.077 38.942 -2.590 -0.562 5.155  C4     ATY 24 
ATY O4     O4   O 0 1 N N N 8.926  51.337 38.310 -3.458 -0.990 5.894  O4     ATY 25 
ATY C5     C5   C 0 1 N N N 10.889 52.023 39.468 -2.122 0.766  5.298  C5     ATY 26 
ATY C5M    C5M  C 0 1 N N N 10.737 53.486 39.266 -2.691 1.666  6.364  C5M    ATY 27 
ATY C6     C6   C 0 1 N N N 11.952 51.602 40.140 -1.159 1.216  4.465  C6     ATY 28 
ATY HPA2   2HPA H 0 0 N N N 12.814 53.731 44.546 -1.482 -1.399 -2.350 HPA2   ATY 29 
ATY HPB2   2HPB H 0 0 N N N 18.025 56.889 44.003 -2.526 0.289  -7.093 HPB2   ATY 30 
ATY HPB3   3HPB H 0 0 N N N 18.529 54.680 44.980 0.270  0.999  -6.227 HPB3   ATY 31 
ATY "H5'2" 2H5* H 0 0 N N N 15.670 51.912 44.464 1.934  0.092  -1.467 "H5'2" ATY 32 
ATY "H5'1" 1H5* H 0 0 N N N 14.009 51.801 44.615 0.661  -0.941 -0.775 "H5'1" ATY 33 
ATY "H4'"  H4*  H 0 1 N N N 15.166 49.663 43.821 1.559  1.765  0.334  "H4'"  ATY 34 
ATY "H3'"  H3*  H 0 1 N N N 16.583 51.139 41.921 2.244  -1.111 0.962  "H3'"  ATY 35 
ATY HHR3   3HHR H 0 0 N N N 19.042 50.478 39.625 6.757  -0.409 1.425  HHR3   ATY 36 
ATY HHR2   2HHR H 0 0 N N N 17.267 50.787 39.533 6.137  0.829  0.308  HHR2   ATY 37 
ATY HHR1   1HHR H 0 0 N N N 18.121 51.259 40.964 6.109  1.119  2.064  HHR1   ATY 38 
ATY "H2'2" 2H2* H 0 0 N N N 14.521 51.763 40.540 1.419  -0.977 3.114  "H2'2" ATY 39 
ATY "H2'1" 1H2* H 0 0 N N N 15.092 50.452 39.701 2.387  0.504  3.392  "H2'1" ATY 40 
ATY "H1'"  H1*  H 0 1 N N N 13.589 48.800 40.903 0.613  1.920  2.808  "H1'"  ATY 41 
ATY H3     H3   H 0 1 N N N 9.662  49.019 38.866 -2.382 -2.259 4.090  H3     ATY 42 
ATY H5M3   3H5M H 0 0 N N N 11.469 54.220 39.674 -3.450 1.125  6.929  H5M3   ATY 43 
ATY H5M2   2H5M H 0 0 N N N 10.648 53.669 38.169 -1.894 1.981  7.037  H5M2   ATY 44 
ATY H5M1   1H5M H 0 0 N N N 9.725  53.775 39.634 -3.141 2.542  5.898  H5M1   ATY 45 
ATY H6     H6   H 0 1 N N N 12.609 52.408 40.507 -0.789 2.226  4.559  H6     ATY 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ATY PA    O1A    DOUB N N 1  
ATY PA    O2A    SING N N 2  
ATY PA    O3A    SING N N 3  
ATY PA    "O5'"  SING N N 4  
ATY O2A   HPA2   SING N N 5  
ATY O3A   PB     SING N N 6  
ATY PB    O1B    DOUB N N 7  
ATY PB    O2B    SING N N 8  
ATY PB    O3B    SING N N 9  
ATY O2B   HPB2   SING N N 10 
ATY O3B   HPB3   SING N N 11 
ATY "O5'" "C5'"  SING N N 12 
ATY "C5'" "C4'"  SING N N 13 
ATY "C5'" "H5'2" SING N N 14 
ATY "C5'" "H5'1" SING N N 15 
ATY "C4'" "O4'"  SING N N 16 
ATY "C4'" "C3'"  SING N N 17 
ATY "C4'" "H4'"  SING N N 18 
ATY "O4'" "C1'"  SING N N 19 
ATY "C3'" "O3'"  SING N N 20 
ATY "C3'" "C2'"  SING N N 21 
ATY "C3'" "H3'"  SING N N 22 
ATY "O3'" CR     SING N N 23 
ATY CR    OR     DOUB N N 24 
ATY CR    CHR    SING N N 25 
ATY CHR   HHR3   SING N N 26 
ATY CHR   HHR2   SING N N 27 
ATY CHR   HHR1   SING N N 28 
ATY "C2'" "C1'"  SING N N 29 
ATY "C2'" "H2'2" SING N N 30 
ATY "C2'" "H2'1" SING N N 31 
ATY "C1'" N1     SING N N 32 
ATY "C1'" "H1'"  SING N N 33 
ATY N1    C2     SING N N 34 
ATY N1    C6     SING N N 35 
ATY C2    O2     DOUB N N 36 
ATY C2    N3     SING N N 37 
ATY N3    C4     SING N N 38 
ATY N3    H3     SING N N 39 
ATY C4    O4     DOUB N N 40 
ATY C4    C5     SING N N 41 
ATY C5    C5M    SING N N 42 
ATY C5    C6     DOUB N N 43 
ATY C5M   H5M3   SING N N 44 
ATY C5M   H5M2   SING N N 45 
ATY C5M   H5M1   SING N N 46 
ATY C6    H6     SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ATY SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(=C1)C)CC2OC(=O)C"                                                                                                                         
ATY SMILES_CANONICAL CACTVS               3.341 "CC(=O)O[C@H]1C[C@@H](O[C@@H]1CO[P@](O)(=O)O[P](O)(O)=O)N2C=C(C)C(=O)NC2=O"                                                                                                        
ATY SMILES           CACTVS               3.341 "CC(=O)O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=C(C)C(=O)NC2=O"                                                                                                              
ATY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)OC(=O)C"                                                                                                        
ATY SMILES           "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)O)OC(=O)C"                                                                                                                         
ATY InChI            InChI                1.03  "InChI=1S/C12H18N2O12P2/c1-6-4-14(12(17)13-11(6)16)10-3-8(24-7(2)15)9(25-10)5-23-28(21,22)26-27(18,19)20/h4,8-10H,3,5H2,1-2H3,(H,21,22)(H,13,16,17)(H2,18,19,20)/t8-,9+,10+/m0/s1" 
ATY InChIKey         InChI                1.03  UWSIAAWKEICIJY-IVZWLZJFSA-N                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ATY "SYSTEMATIC NAME" ACDLabs              10.04 
;3'-O-acetylthymidine 5'-(trihydrogen diphosphate)
;
ATY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-2-[(hydroxy-phosphonooxy-phosphoryl)oxymethyl]-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-3-yl] ethanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ATY "Create component"  2000-03-09 EBI  
ATY "Modify descriptor" 2011-06-04 RCSB 
# 
