data_3BY
# 
_chem_comp.id                                    3BY 
_chem_comp.name                                  1-methyl-L-proline 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H11 N O2" 
_chem_comp.mon_nstd_parent_comp_id               PRO 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        129.157 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3BY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4QUP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3BY O   O1  O 0 1 N N N Y N Y -23.525 123.288 384.521 1.395  -0.324 1.148  O1  3BY 1  
3BY C   C6  C 0 1 N N N Y N Y -24.599 122.687 384.672 1.347  0.228  0.075  C6  3BY 2  
3BY OXT O   O 0 1 N Y N Y N Y -25.369 122.747 385.746 2.480  0.618  -0.531 O   3BY 3  
3BY CA  C   C 0 1 N N S Y N N -24.888 121.527 383.704 0.016  0.472  -0.588 C   3BY 4  
3BY CB  C1  C 0 1 N N N N N N -24.560 120.273 384.467 -0.806 1.481  0.241  C1  3BY 5  
3BY CG  C2  C 0 1 N N N N N N -24.349 119.201 383.460 -2.251 0.927  0.134  C2  3BY 6  
3BY CD  C3  C 0 1 N N N N N N -24.216 119.818 382.216 -2.001 -0.602 0.138  C3  3BY 7  
3BY N   N   N 0 1 N N N Y Y N -23.974 121.261 382.636 -0.757 -0.783 -0.639 N   3BY 8  
3BY CN  C4  C 0 1 N N N N N N -22.555 121.349 383.035 0.031  -1.908 -0.116 C4  3BY 9  
3BY HXT H1  H 0 1 N Y N Y N Y -24.973 123.324 386.389 3.309  0.437  -0.069 H1  3BY 10 
3BY HA  H2  H 0 1 N N N Y N N -25.937 121.538 383.374 0.169  0.857  -1.596 H2  3BY 11 
3BY HB3 H3  H 0 1 N N N N N N -25.393 120.007 385.135 -0.473 1.489  1.279  H3  3BY 12 
3BY HB2 H4  H 0 1 N N N N N N -23.646 120.419 385.061 -0.740 2.479  -0.192 H4  3BY 13 
3BY HG3 H5  H 0 1 N N N N N N -25.212 118.519 383.451 -2.849 1.227  0.994  H5  3BY 14 
3BY HG2 H6  H 0 1 N N N N N N -23.436 118.635 383.699 -2.723 1.244  -0.797 H6  3BY 15 
3BY HD3 H7  H 0 1 N N N N N N -25.132 119.720 381.616 -1.868 -0.961 1.158  H7  3BY 16 
3BY HD2 H8  H 0 1 N N N N N N -23.363 119.412 381.652 -2.829 -1.123 -0.344 H8  3BY 17 
3BY HN1 H10 H 0 1 N N N N N N -22.325 122.378 383.350 -0.486 -2.843 -0.330 H10 3BY 18 
3BY HN2 H11 H 0 1 N N N N N N -22.366 120.659 383.871 1.011  -1.917 -0.593 H11 3BY 19 
3BY HN3 H12 H 0 1 N N N N N N -21.917 121.075 382.182 0.151  -1.797 0.961  H12 3BY 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3BY CD  N   SING N N 1  
3BY CD  CG  SING N N 2  
3BY N   CN  SING N N 3  
3BY N   CA  SING N N 4  
3BY CG  CB  SING N N 5  
3BY CA  CB  SING N N 6  
3BY CA  C   SING N N 7  
3BY O   C   DOUB N N 8  
3BY C   OXT SING N N 9  
3BY OXT HXT SING N N 10 
3BY CA  HA  SING N N 11 
3BY CB  HB3 SING N N 12 
3BY CB  HB2 SING N N 13 
3BY CG  HG3 SING N N 14 
3BY CG  HG2 SING N N 15 
3BY CD  HD3 SING N N 16 
3BY CD  HD2 SING N N 17 
3BY CN  HN1 SING N N 18 
3BY CN  HN2 SING N N 19 
3BY CN  HN3 SING N N 20 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3BY SMILES           ACDLabs              12.01 "O=C(O)C1CCCN1C"                                                         
3BY InChI            InChI                1.03  "InChI=1S/C6H11NO2/c1-7-4-2-3-5(7)6(8)9/h5H,2-4H2,1H3,(H,8,9)/t5-/m0/s1" 
3BY InChIKey         InChI                1.03  CWLQUGTUXBXTLF-YFKPBYRVSA-N                                              
3BY SMILES_CANONICAL CACTVS               3.385 "CN1CCC[C@H]1C(O)=O"                                                     
3BY SMILES           CACTVS               3.385 "CN1CCC[CH]1C(O)=O"                                                      
3BY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN1CCC[C@H]1C(=O)O"                                                     
3BY SMILES           "OpenEye OEToolkits" 1.7.6 "CN1CCCC1C(=O)O"                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3BY "SYSTEMATIC NAME" ACDLabs              12.01 1-methyl-L-proline                           
3BY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-1-methylpyrrolidine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3BY "Create component"   2014-07-23 RCSB 
3BY "Initial release"    2015-07-15 RCSB 
3BY "Other modification" 2015-10-05 RCSB 
3BY "Modify backbone"    2023-11-03 PDBE 
3BY "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3BY 
_pdbx_chem_comp_pcm.modified_residue_id                PRO 
_pdbx_chem_comp_pcm.type                               Methylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     PTM-0219 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
