data_2DY
# 
_chem_comp.id                                    2DY 
_chem_comp.name                                  "(3S,10aS)-2-[(2S)-2-cyclohexyl-2-{[(2S)-2-(methylamino)butanoyl]amino}acetyl]-N-[(4R)-3,4-dihydro-2H-chromen-4-yl]-1,2,3,4,10,10a-hexahydropyrazino[1,2-a]indole-3-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H45 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-09-25 
_chem_comp.pdbx_modified_date                    2013-12-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        587.752 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2DY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4MU7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2DY C1  C1  C 0 1 N N N 21.170 -7.446  -11.646 -5.940 -1.510 3.283  C1  2DY 1  
2DY C2  C2  C 0 1 N N N 22.254 -6.459  -11.212 -4.522 -1.894 2.858  C2  2DY 2  
2DY C3  C3  C 0 1 N N S 23.626 -7.133  -11.304 -4.507 -2.219 1.363  C3  2DY 3  
2DY N5  N5  N 0 1 N N N 24.625 -6.198  -10.745 -5.325 -3.414 1.114  N5  2DY 4  
2DY C6  C6  C 0 1 N N N 25.980 -6.792  -10.584 -5.615 -3.564 -0.319 C6  2DY 5  
2DY C7  C7  C 0 1 N N N 23.929 -7.461  -12.730 -3.091 -2.478 0.919  C7  2DY 6  
2DY O8  O8  O 0 1 N N N 24.373 -6.599  -13.450 -2.631 -3.599 0.981  O8  2DY 7  
2DY N9  N9  N 0 1 N N N 23.696 -8.699  -13.172 -2.334 -1.464 0.453  N9  2DY 8  
2DY C10 C10 C 0 1 N N S 23.974 -9.184  -14.515 -0.957 -1.716 0.022  C10 2DY 9  
2DY C12 C12 C 0 1 N N N 25.165 -10.081 -14.093 -0.957 -2.191 -1.433 C12 2DY 10 
2DY C13 C13 C 0 1 N N N 25.072 -11.554 -14.505 -1.781 -3.475 -1.551 C13 2DY 11 
2DY C14 C14 C 0 1 N N N 26.229 -12.383 -13.906 -1.781 -3.949 -3.005 C14 2DY 12 
2DY C15 C15 C 0 1 N N N 27.338 -11.519 -13.269 -2.395 -2.866 -3.895 C15 2DY 13 
2DY C16 C16 C 0 1 N N N 27.701 -10.325 -14.168 -1.572 -1.582 -3.777 C16 2DY 14 
2DY C17 C17 C 0 1 N N N 26.495 -9.420  -14.474 -1.571 -1.108 -2.323 C17 2DY 15 
2DY C18 C18 C 0 1 N N N 22.794 -9.923  -15.100 -0.155 -0.446 0.135  C18 2DY 16 
2DY O19 O19 O 0 1 N N N 21.983 -10.394 -14.319 -0.656 0.617  -0.163 O19 2DY 17 
2DY N20 N20 N 0 1 N N N 22.629 -10.093 -16.448 1.120  -0.491 0.570  N20 2DY 18 
2DY C21 C21 C 0 1 N N N 23.628 -9.544  -17.415 1.699  -1.768 1.033  C21 2DY 19 
2DY C22 C22 C 0 1 N N S 23.588 -10.410 -18.676 3.029  -1.935 0.301  C22 2DY 20 
2DY C24 C24 C 0 1 N N N 24.522 -9.873  -19.791 3.896  -3.072 0.878  C24 2DY 21 
2DY C25 C25 C 0 1 Y N N 23.592 -9.601  -20.962 5.287  -2.506 0.709  C25 2DY 22 
2DY C26 C26 C 0 1 Y N N 23.891 -9.238  -22.266 6.510  -3.139 0.720  C26 2DY 23 
2DY C27 C27 C 0 1 Y N N 22.815 -9.041  -23.140 7.638  -2.349 0.530  C27 2DY 24 
2DY C28 C28 C 0 1 Y N N 21.497 -9.190  -22.732 7.536  -0.987 0.338  C28 2DY 25 
2DY C29 C29 C 0 1 Y N N 21.181 -9.552  -21.426 6.313  -0.336 0.333  C29 2DY 26 
2DY C30 C30 C 0 1 Y N N 22.250 -9.781  -20.540 5.171  -1.112 0.531  C30 2DY 27 
2DY N31 N31 N 0 1 N N N 22.239 -10.085 -19.193 3.848  -0.737 0.630  N31 2DY 28 
2DY C32 C32 C 0 1 N N N 21.086 -10.549 -18.445 3.352  0.459  -0.023 C32 2DY 29 
2DY C33 C33 C 0 1 N N S 21.465 -10.831 -16.952 1.938  0.729  0.577  C33 2DY 30 
2DY C35 C35 C 0 1 N N N 21.721 -12.310 -16.763 1.262  1.825  -0.206 C35 2DY 31 
2DY O36 O36 O 0 1 N N N 22.869 -12.735 -16.649 0.668  1.561  -1.230 O36 2DY 32 
2DY N37 N37 N 0 1 N N N 20.651 -13.130 -16.731 1.317  3.098  0.232  N37 2DY 33 
2DY C38 C38 C 0 1 N N R 20.762 -14.583 -16.528 0.659  4.163  -0.530 C38 2DY 34 
2DY C40 C40 C 0 1 N N N 20.976 -15.283 -17.879 1.347  5.499  -0.235 C40 2DY 35 
2DY C41 C41 C 0 1 N N N 19.638 -15.654 -18.525 0.472  6.626  -0.798 C41 2DY 36 
2DY O42 O42 O 0 1 N N N 18.968 -16.533 -17.622 -0.764 6.637  -0.082 O42 2DY 37 
2DY C43 C43 C 0 1 Y N N 18.702 -16.051 -16.376 -1.422 5.458  0.066  C43 2DY 38 
2DY C44 C44 C 0 1 Y N N 17.576 -16.522 -15.694 -2.766 5.489  0.426  C44 2DY 39 
2DY C45 C45 C 0 1 Y N N 17.294 -16.027 -14.425 -3.467 4.312  0.591  C45 2DY 40 
2DY C46 C46 C 0 1 Y N N 18.118 -15.070 -13.852 -2.835 3.098  0.397  C46 2DY 41 
2DY C47 C47 C 0 1 Y N N 19.241 -14.610 -14.533 -1.502 3.064  0.036  C47 2DY 42 
2DY C48 C48 C 0 1 Y N N 19.533 -15.093 -15.802 -0.793 4.241  -0.132 C48 2DY 43 
2DY H1  H1  H 0 1 N N N 20.185 -6.962  -11.580 -6.264 -0.636 2.718  H1  2DY 44 
2DY H2  H2  H 0 1 N N N 21.355 -7.761  -12.684 -6.617 -2.342 3.085  H2  2DY 45 
2DY H3  H3  H 0 1 N N N 21.191 -8.326  -10.987 -5.951 -1.278 4.348  H3  2DY 46 
2DY H4  H4  H 0 1 N N N 22.233 -5.579  -11.871 -3.845 -1.063 3.056  H4  2DY 47 
2DY H5  H5  H 0 1 N N N 22.069 -6.144  -10.174 -4.198 -2.768 3.423  H5  2DY 48 
2DY H6  H6  H 0 1 N N N 23.611 -8.059  -10.710 -4.915 -1.377 0.804  H6  2DY 49 
2DY H7  H7  H 0 1 N N N 24.697 -5.410  -11.357 -4.878 -4.241 1.480  H7  2DY 50 
2DY H9  H9  H 0 1 N N N 26.664 -6.039  -10.165 -6.088 -2.655 -0.690 H9  2DY 51 
2DY H10 H10 H 0 1 N N N 25.924 -7.655  -9.904  -4.686 -3.738 -0.861 H10 2DY 52 
2DY H11 H11 H 0 1 N N N 26.354 -7.122  -11.564 -6.286 -4.410 -0.467 H11 2DY 53 
2DY H12 H12 H 0 1 N N N 23.296 -9.348  -12.525 -2.702 -0.568 0.404  H12 2DY 54 
2DY H13 H13 H 0 1 N N N 24.312 -8.379  -15.184 -0.513 -2.485 0.654  H13 2DY 55 
2DY H14 H14 H 0 1 N N N 25.147 -10.085 -12.993 0.067  -2.385 -1.752 H14 2DY 56 
2DY H15 H15 H 0 1 N N N 24.116 -11.965 -14.149 -1.343 -4.246 -0.917 H15 2DY 57 
2DY H16 H16 H 0 1 N N N 25.114 -11.622 -15.602 -2.805 -3.280 -1.232 H16 2DY 58 
2DY H17 H17 H 0 1 N N N 25.817 -13.048 -13.132 -0.757 -4.143 -3.324 H17 2DY 59 
2DY H18 H18 H 0 1 N N N 26.676 -12.988 -14.709 -2.367 -4.864 -3.089 H18 2DY 60 
2DY H19 H19 H 0 1 N N N 28.234 -12.140 -13.118 -2.395 -3.204 -4.931 H19 2DY 61 
2DY H20 H20 H 0 1 N N N 26.985 -11.142 -12.298 -3.419 -2.672 -3.576 H20 2DY 62 
2DY H21 H21 H 0 1 N N N 28.102 -10.709 -15.118 -0.548 -1.776 -4.096 H21 2DY 63 
2DY H22 H22 H 0 1 N N N 28.471 -9.725  -13.661 -2.009 -0.811 -4.411 H22 2DY 64 
2DY H23 H23 H 0 1 N N N 26.601 -8.484  -13.906 -2.595 -0.913 -2.004 H23 2DY 65 
2DY H24 H24 H 0 1 N N N 26.484 -9.196  -15.551 -0.985 -0.193 -2.239 H24 2DY 66 
2DY H25 H25 H 0 1 N N N 24.634 -9.576  -16.971 1.867  -1.733 2.109  H25 2DY 67 
2DY H26 H26 H 0 1 N N N 23.372 -8.504  -17.667 1.030  -2.592 0.786  H26 2DY 68 
2DY H27 H27 H 0 1 N N N 23.741 -11.480 -18.470 2.884  -2.044 -0.774 H27 2DY 69 
2DY H28 H28 H 0 1 N N N 25.279 -10.624 -20.061 3.668  -3.243 1.930  H28 2DY 70 
2DY H29 H29 H 0 1 N N N 25.023 -8.948  -19.468 3.774  -3.989 0.300  H29 2DY 71 
2DY H30 H30 H 0 1 N N N 24.912 -9.112  -22.594 6.589  -4.206 0.871  H30 2DY 72 
2DY H31 H31 H 0 1 N N N 23.017 -8.764  -24.164 8.614  -2.811 0.533  H31 2DY 73 
2DY H32 H32 H 0 1 N N N 20.701 -9.022  -23.442 8.437  -0.410 0.187  H32 2DY 74 
2DY H33 H33 H 0 1 N N N 20.155 -9.653  -21.105 6.246  0.731  0.183  H33 2DY 75 
2DY H34 H34 H 0 1 N N N 20.301 -9.779  -18.478 4.028  1.292  0.166  H34 2DY 76 
2DY H35 H35 H 0 1 N N N 20.709 -11.476 -18.902 3.266  0.286  -1.096 H35 2DY 77 
2DY H36 H36 H 0 1 N N N 20.592 -10.561 -16.339 2.039  1.036  1.618  H36 2DY 78 
2DY H37 H37 H 0 1 N N N 19.741 -12.733 -16.851 1.792  3.310  1.051  H37 2DY 79 
2DY H38 H38 H 0 1 N N N 21.641 -14.786 -15.899 0.732  3.946  -1.595 H38 2DY 80 
2DY H39 H39 H 0 1 N N N 21.564 -16.199 -17.720 1.460  5.625  0.842  H39 2DY 81 
2DY H40 H40 H 0 1 N N N 21.524 -14.607 -18.551 2.327  5.521  -0.712 H40 2DY 82 
2DY H41 H41 H 0 1 N N N 19.034 -14.749 -18.689 0.978  7.583  -0.671 H41 2DY 83 
2DY H42 H42 H 0 1 N N N 19.810 -16.160 -19.487 0.281  6.449  -1.857 H42 2DY 84 
2DY H43 H43 H 0 1 N N N 16.933 -17.262 -16.147 -3.261 6.436  0.578  H43 2DY 85 
2DY H44 H44 H 0 1 N N N 16.432 -16.389 -13.885 -4.510 4.339  0.872  H44 2DY 86 
2DY H45 H45 H 0 1 N N N 17.887 -14.680 -12.872 -3.383 2.176  0.528  H45 2DY 87 
2DY H46 H46 H 0 1 N N N 19.887 -13.876 -14.074 -1.010 2.114  -0.115 H46 2DY 88 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2DY C27 C28 DOUB Y N 1  
2DY C27 C26 SING Y N 2  
2DY C28 C29 SING Y N 3  
2DY C26 C25 DOUB Y N 4  
2DY C29 C30 DOUB Y N 5  
2DY C25 C30 SING Y N 6  
2DY C25 C24 SING N N 7  
2DY C30 N31 SING N N 8  
2DY C24 C22 SING N N 9  
2DY N31 C22 SING N N 10 
2DY N31 C32 SING N N 11 
2DY C22 C21 SING N N 12 
2DY C41 C40 SING N N 13 
2DY C41 O42 SING N N 14 
2DY C32 C33 SING N N 15 
2DY C40 C38 SING N N 16 
2DY O42 C43 SING N N 17 
2DY C21 N20 SING N N 18 
2DY C33 C35 SING N N 19 
2DY C33 N20 SING N N 20 
2DY C35 N37 SING N N 21 
2DY C35 O36 DOUB N N 22 
2DY N37 C38 SING N N 23 
2DY C38 C48 SING N N 24 
2DY N20 C18 SING N N 25 
2DY C43 C48 DOUB Y N 26 
2DY C43 C44 SING Y N 27 
2DY C48 C47 SING Y N 28 
2DY C44 C45 DOUB Y N 29 
2DY C18 C10 SING N N 30 
2DY C18 O19 DOUB N N 31 
2DY C47 C46 DOUB Y N 32 
2DY C10 C12 SING N N 33 
2DY C10 N9  SING N N 34 
2DY C13 C12 SING N N 35 
2DY C13 C14 SING N N 36 
2DY C17 C16 SING N N 37 
2DY C17 C12 SING N N 38 
2DY C45 C46 SING Y N 39 
2DY C16 C15 SING N N 40 
2DY C14 C15 SING N N 41 
2DY O8  C7  DOUB N N 42 
2DY N9  C7  SING N N 43 
2DY C7  C3  SING N N 44 
2DY C1  C2  SING N N 45 
2DY C3  C2  SING N N 46 
2DY C3  N5  SING N N 47 
2DY N5  C6  SING N N 48 
2DY C1  H1  SING N N 49 
2DY C1  H2  SING N N 50 
2DY C1  H3  SING N N 51 
2DY C2  H4  SING N N 52 
2DY C2  H5  SING N N 53 
2DY C3  H6  SING N N 54 
2DY N5  H7  SING N N 55 
2DY C6  H9  SING N N 56 
2DY C6  H10 SING N N 57 
2DY C6  H11 SING N N 58 
2DY N9  H12 SING N N 59 
2DY C10 H13 SING N N 60 
2DY C12 H14 SING N N 61 
2DY C13 H15 SING N N 62 
2DY C13 H16 SING N N 63 
2DY C14 H17 SING N N 64 
2DY C14 H18 SING N N 65 
2DY C15 H19 SING N N 66 
2DY C15 H20 SING N N 67 
2DY C16 H21 SING N N 68 
2DY C16 H22 SING N N 69 
2DY C17 H23 SING N N 70 
2DY C17 H24 SING N N 71 
2DY C21 H25 SING N N 72 
2DY C21 H26 SING N N 73 
2DY C22 H27 SING N N 74 
2DY C24 H28 SING N N 75 
2DY C24 H29 SING N N 76 
2DY C26 H30 SING N N 77 
2DY C27 H31 SING N N 78 
2DY C28 H32 SING N N 79 
2DY C29 H33 SING N N 80 
2DY C32 H34 SING N N 81 
2DY C32 H35 SING N N 82 
2DY C33 H36 SING N N 83 
2DY N37 H37 SING N N 84 
2DY C38 H38 SING N N 85 
2DY C40 H39 SING N N 86 
2DY C40 H40 SING N N 87 
2DY C41 H41 SING N N 88 
2DY C41 H42 SING N N 89 
2DY C44 H43 SING N N 90 
2DY C45 H44 SING N N 91 
2DY C46 H45 SING N N 92 
2DY C47 H46 SING N N 93 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2DY SMILES           ACDLabs              12.01 "O=C(NC(C(=O)N3CC2N(c1ccccc1C2)CC3C(=O)NC4c5c(OCC4)cccc5)C6CCCCC6)C(NC)CC" 
2DY InChI            InChI                1.03  
;InChI=1S/C34H45N5O4/c1-3-26(35-2)32(40)37-31(22-11-5-4-6-12-22)34(42)39-20-24-19-23-13-7-9-15-28(23)38(24)21-29(39)33(41)36-27-17-18-43-30-16-10-8-14-25(27)30/h7-10,13-16,22,24,26-27,29,31,35H,3-6,11-12,17-21H2,1-2H3,(H,36,41)(H,37,40)/t24-,26-,27+,29-,31-/m0/s1
;
2DY InChIKey         InChI                1.03  TYXHMZBEDPKUQY-HDFVOGAFSA-N 
2DY SMILES_CANONICAL CACTVS               3.385 "CC[C@H](NC)C(=O)N[C@@H](C1CCCCC1)C(=O)N2C[C@@H]3Cc4ccccc4N3C[C@H]2C(=O)N[C@@H]5CCOc6ccccc56" 
2DY SMILES           CACTVS               3.385 "CC[CH](NC)C(=O)N[CH](C1CCCCC1)C(=O)N2C[CH]3Cc4ccccc4N3C[CH]2C(=O)N[CH]5CCOc6ccccc56" 
2DY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC[C@@H](C(=O)N[C@@H](C1CCCCC1)C(=O)N2C[C@@H]3Cc4ccccc4N3C[C@H]2C(=O)N[C@@H]5CCOc6c5cccc6)NC" 
2DY SMILES           "OpenEye OEToolkits" 1.7.6 "CCC(C(=O)NC(C1CCCCC1)C(=O)N2CC3Cc4ccccc4N3CC2C(=O)NC5CCOc6c5cccc6)NC" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2DY "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,10aS)-2-[(2S)-2-cyclohexyl-2-{[(2S)-2-(methylamino)butanoyl]amino}acetyl]-N-[(4R)-3,4-dihydro-2H-chromen-4-yl]-1,2,3,4,10,10a-hexahydropyrazino[1,2-a]indole-3-carboxamide"    
2DY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3S,10aS)-2-[(2S)-2-cyclohexyl-2-[[(2S)-2-(methylamino)butanoyl]amino]ethanoyl]-N-[(4R)-3,4-dihydro-2H-chromen-4-yl]-3,4,10,10a-tetrahydro-1H-pyrazino[1,2-a]indole-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2DY "Create component" 2013-09-25 RCSB 
2DY "Initial release"  2013-12-11 RCSB 
# 
