data_1RY
# 
_chem_comp.id                                    1RY 
_chem_comp.name                                  "[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H13 F N3 O12 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-05-14 
_chem_comp.pdbx_modified_date                    2014-07-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        487.186 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1RY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4K4I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1RY OAC OAC O 0 1 N N N -35.427 25.410 8.344  4.946  -0.698 -2.302 OAC 1RY 1  
1RY PAZ PAZ P 0 1 N N N -34.412 24.428 7.815  4.559  -1.385 -0.899 PAZ 1RY 2  
1RY OAF OAF O 0 1 N N N -34.980 23.041 7.697  4.272  -2.952 -1.129 OAF 1RY 3  
1RY OAG OAG O 0 1 N N N -33.704 24.860 6.560  5.678  -1.223 0.056  OAG 1RY 4  
1RY OAQ OAQ O 0 1 N N N -33.288 24.378 8.963  3.240  -0.680 -0.302 OAQ 1RY 5  
1RY PBB PBB P 0 1 N N N -33.012 23.109 9.912  2.954  0.734  0.414  PBB 1RY 6  
1RY OAI OAI O 0 1 N N N -31.961 23.568 10.884 3.504  0.691  1.926  OAI 1RY 7  
1RY OAE OAE O 0 1 N N N -34.299 22.529 10.416 3.641  1.812  -0.331 OAE 1RY 8  
1RY OAR OAR O 0 1 N N N -32.241 22.077 8.944  1.369  1.017  0.427  OAR 1RY 9  
1RY PBA PBA P 0 1 N N N -32.471 20.482 8.856  0.471  2.343  0.597  PBA 1RY 10 
1RY OAH OAH O 0 1 N N N -31.591 19.995 7.728  1.031  3.428  -0.240 OAH 1RY 11 
1RY OAD OAD O 0 1 N N N -33.964 20.239 8.822  0.475  2.800  2.141  OAD 1RY 12 
1RY OAO OAO O 0 1 N N N -31.762 20.022 10.232 -1.038 2.032  0.132  OAO 1RY 13 
1RY CAL CAL C 0 1 N N N -32.432 19.877 11.481 -2.054 3.035  0.065  CAL 1RY 14 
1RY CAW CAW C 0 1 N N R -31.791 18.708 12.231 -3.364 2.404  -0.411 CAW 1RY 15 
1RY OAP OAP O 0 1 N N N -30.368 18.851 12.195 -3.760 1.329  0.461  OAP 1RY 16 
1RY SAS SAS S 0 1 N N N -32.216 17.166 11.468 -3.129 1.551  -2.026 SAS 1RY 17 
1RY CAM CAM C 0 1 N N N -30.714 16.478 12.035 -4.460 0.319  -1.695 CAM 1RY 18 
1RY CAX CAX C 0 1 N N S -29.705 17.608 12.185 -4.367 0.204  -0.150 CAX 1RY 19 
1RY NAY NAY N 0 1 N N N -28.758 17.543 11.083 -3.586 -0.990 0.186  NAY 1RY 20 
1RY CAK CAK C 0 1 N N N -29.100 17.985 9.867  -2.438 -0.868 0.912  CAK 1RY 21 
1RY CAU CAU C 0 1 N N N -28.185 17.899 8.828  -1.728 -1.981 1.220  CAU 1RY 22 
1RY FAJ FAJ F 0 1 N N N -28.490 18.356 7.605  -0.588 -1.890 1.938  FAJ 1RY 23 
1RY CAV CAV C 0 1 N N N -27.549 17.001 11.278 -4.009 -2.202 -0.219 CAV 1RY 24 
1RY OAB OAB O 0 1 N N N -27.199 16.540 12.486 -5.041 -2.292 -0.864 OAB 1RY 25 
1RY NAN NAN N 0 1 N N N -26.647 16.895 10.300 -3.320 -3.303 0.071  NAN 1RY 26 
1RY CAT CAT C 0 1 N N N -26.943 17.345 9.067  -2.201 -3.236 0.780  CAT 1RY 27 
1RY NAA NAA N 0 1 N N N -26.036 17.256 8.066  -1.500 -4.383 1.078  NAA 1RY 28 
1RY H1  H1  H 0 1 N N N -35.456 26.172 7.777  4.257  -0.766 -2.977 H1  1RY 29 
1RY H2  H2  H 0 1 N N N -34.783 22.690 6.837  5.025  -3.441 -1.487 H2  1RY 30 
1RY H3  H3  H 0 1 N N N -32.265 23.423 11.772 3.096  0.006  2.473  H3  1RY 31 
1RY H4  H4  H 0 1 N N N -34.191 19.769 8.028  0.120  2.136  2.748  H4  1RY 32 
1RY H5  H5  H 0 1 N N N -32.327 20.800 12.070 -2.200 3.472  1.053  H5  1RY 33 
1RY H6  H6  H 0 1 N N N -33.499 19.670 11.310 -1.751 3.814  -0.635 H6  1RY 34 
1RY H7  H7  H 0 1 N N N -32.166 18.673 13.265 -4.151 3.155  -0.481 H7  1RY 35 
1RY H8  H8  H 0 1 N N N -30.872 15.987 13.007 -5.434 0.701  -2.001 H8  1RY 36 
1RY H9  H9  H 0 1 N N N -30.343 15.741 11.308 -4.244 -0.634 -2.177 H9  1RY 37 
1RY H10 H10 H 0 1 N N N -29.166 17.465 13.133 -5.372 0.084  0.253  H10 1RY 38 
1RY H11 H11 H 0 1 N N N -30.080 18.405 9.696  -2.098 0.104  1.237  H11 1RY 39 
1RY H12 H12 H 0 1 N N N -25.137 16.853 8.240  -0.679 -4.330 1.592  H12 1RY 40 
1RY H13 H13 H 0 1 N N N -26.265 17.593 7.153  -1.827 -5.244 0.774  H13 1RY 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1RY OAG PAZ DOUB N N 1  
1RY FAJ CAU SING N N 2  
1RY OAF PAZ SING N N 3  
1RY OAH PBA DOUB N N 4  
1RY PAZ OAC SING N N 5  
1RY PAZ OAQ SING N N 6  
1RY NAA CAT SING N N 7  
1RY OAD PBA SING N N 8  
1RY CAU CAT SING N N 9  
1RY CAU CAK DOUB N N 10 
1RY PBA OAR SING N N 11 
1RY PBA OAO SING N N 12 
1RY OAR PBB SING N N 13 
1RY OAQ PBB SING N N 14 
1RY CAT NAN DOUB N N 15 
1RY CAK NAY SING N N 16 
1RY PBB OAE DOUB N N 17 
1RY PBB OAI SING N N 18 
1RY OAO CAL SING N N 19 
1RY NAN CAV SING N N 20 
1RY NAY CAV SING N N 21 
1RY NAY CAX SING N N 22 
1RY CAV OAB DOUB N N 23 
1RY SAS CAM SING N N 24 
1RY SAS CAW SING N N 25 
1RY CAL CAW SING N N 26 
1RY CAM CAX SING N N 27 
1RY CAX OAP SING N N 28 
1RY OAP CAW SING N N 29 
1RY OAC H1  SING N N 30 
1RY OAF H2  SING N N 31 
1RY OAI H3  SING N N 32 
1RY OAD H4  SING N N 33 
1RY CAL H5  SING N N 34 
1RY CAL H6  SING N N 35 
1RY CAW H7  SING N N 36 
1RY CAM H8  SING N N 37 
1RY CAM H9  SING N N 38 
1RY CAX H10 SING N N 39 
1RY CAK H11 SING N N 40 
1RY NAA H12 SING N N 41 
1RY NAA H13 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1RY InChI            InChI                1.03  "InChI=1S/C8H13FN3O12P3S/c9-4-1-12(8(13)11-7(4)10)5-3-28-6(22-5)2-21-26(17,18)24-27(19,20)23-25(14,15)16/h1,5-6H,2-3H2,(H,17,18)(H,19,20)(H2,10,11,13)(H2,14,15,16)/t5-,6+/m0/s1" 
1RY InChIKey         InChI                1.03  WIEOLFZNMKSGEX-NTSWFWBYSA-N                                                                                                                                                       
1RY SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1F)[C@@H]2CS[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"                                                                                                         
1RY SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1F)[CH]2CS[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2"                                                                                                            
1RY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H](O[C@H](S1)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=C(C(=NC2=O)N)F"                                                                                                              
1RY SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(OC(S1)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=C(C(=NC2=O)N)F"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1RY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1RY "Create component" 2013-05-14 RCSB 
1RY "Initial release"  2014-07-16 RCSB 
# 
