data_YRX
# 
_chem_comp.id                                    YRX 
_chem_comp.name                                  "7-[(1~{S})-1-[5-[(3-azanyl-3-methyl-azetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H31 F N4 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-20 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        558.622 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YRX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PGI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YRX C10  C1  C 0 1 Y N N N N N -21.772 -11.803 9.903  1.611   0.202  -0.849 C10  YRX 1  
YRX C17  C2  C 0 1 N N N N N N -20.646 -9.939  3.764  9.541   -1.094 1.197  C17  YRX 2  
YRX C20  C3  C 0 1 Y N N N N N -19.648 -11.185 6.784  4.568   -1.170 1.022  C20  YRX 3  
YRX C36  C4  C 0 1 N N N N N N -28.936 -12.901 16.489 -7.322  -2.265 0.443  C36  YRX 4  
YRX C38  C5  C 0 1 N N N N N N -25.734 -11.445 13.288 -3.707  1.523  0.796  C38  YRX 5  
YRX C01  C6  C 0 1 N N N N N N -22.974 -12.590 15.728 -3.125  3.982  -0.931 C01  YRX 6  
YRX C02  C7  C 0 1 N N S N N N -23.417 -12.072 14.364 -2.553  2.579  -1.148 C02  YRX 7  
YRX C03  C8  C 0 1 Y N N N N N -22.720 -12.831 13.208 -1.178  2.498  -0.536 C03  YRX 8  
YRX C04  C9  C 0 1 Y N N N N N -22.474 -12.147 12.001 -0.322  1.453  -0.880 C04  YRX 9  
YRX C06  C10 C 0 1 Y N N N N N -22.332 -10.638 10.433 0.701   -0.378 -1.715 C06  YRX 10 
YRX C07  C11 C 0 1 N N N N N N -22.494 -9.286  9.742  0.926   -1.599 -2.493 C07  YRX 11 
YRX C11  C12 C 0 1 Y N N N N N -21.146 -11.991 8.498  2.976   -0.282 -0.543 C11  YRX 12 
YRX C12  C13 C 0 1 Y N N N N N -21.453 -13.096 7.712  3.952   -0.300 -1.540 C12  YRX 13 
YRX C13  C14 C 0 1 Y N N N N N -20.863 -13.241 6.460  5.223   -0.752 -1.250 C13  YRX 14 
YRX C14  C15 C 0 1 Y N N N N N -19.961 -12.287 5.990  5.532   -1.186 0.026  C14  YRX 15 
YRX C15  C16 C 0 1 N N N N N N -19.314 -12.479 4.595  6.922   -1.678 0.336  C15  YRX 16 
YRX C22  C17 C 0 1 Y N N N N N -20.239 -11.043 8.035  3.291   -0.720 0.743  C22  YRX 17 
YRX C23  C18 C 0 1 Y N N N N N -21.858 -12.775 10.933 0.958   1.395  -0.298 C23  YRX 18 
YRX C24  C19 C 0 1 Y N N N N N -21.487 -14.130 11.051 1.356   2.378  0.611  C24  YRX 19 
YRX C25  C20 C 0 1 Y N N N N N -21.736 -14.817 12.243 0.500   3.392  0.933  C25  YRX 20 
YRX C26  C21 C 0 1 Y N N N N N -22.357 -14.173 13.319 -0.765  3.455  0.363  C26  YRX 21 
YRX C28  C22 C 0 1 N N N N N N -25.644 -13.325 14.622 -4.147  0.512  -1.208 C28  YRX 22 
YRX C29  C23 C 0 1 N N N N N N -27.005 -13.165 14.135 -4.904  -0.213 -0.079 C29  YRX 23 
YRX C30  C24 C 0 1 N N N N N N -28.168 -14.134 14.456 -6.414  -0.141 -0.313 C30  YRX 24 
YRX C32  C25 C 0 1 N N N N N N -30.277 -14.424 15.700 -8.569  -0.589 0.716  C32  YRX 25 
YRX C33  C26 C 0 1 N N N N N N -30.290 -13.477 16.889 -8.734  -2.087 1.030  C33  YRX 26 
YRX C34  C27 C 0 1 N N N N N N -31.034 -14.397 17.893 -9.831  -2.771 0.213  C34  YRX 27 
YRX F21  F1  F 0 1 N N N N N N -18.766 -10.231 6.350  4.875   -1.601 2.265  F21  YRX 28 
YRX N05  N1  N 0 1 Y N N N N N -22.738 -10.875 11.667 -0.453  0.378  -1.727 N05  YRX 29 
YRX N27  N2  N 0 1 N N N N N N -24.839 -12.283 14.139 -3.429  1.591  -0.513 N27  YRX 30 
YRX N31  N3  N 0 1 N N N N N N -29.278 -13.453 15.133 -7.112  -0.838 0.776  N31  YRX 31 
YRX N35  N4  N 0 1 N N N N N N -30.971 -12.171 17.296 -8.818  -2.384 2.467  N35  YRX 32 
YRX O08  O1  O 0 1 N N N N N N -22.446 -8.238  10.444 -0.042  -2.069 -3.307 O08  YRX 33 
YRX O09  O2  O 0 1 N N N N N N -22.703 -9.238  8.498  1.986   -2.189 -2.406 O09  YRX 34 
YRX O18  O3  O 0 1 N N N N N N -19.628 -11.729 1.983  7.434   0.192  2.123  O18  YRX 35 
YRX O19  O4  O 0 1 N N N N N N -21.539 -12.413 3.010  8.102   0.620  -0.196 O19  YRX 36 
YRX O37  O5  O 0 1 N N N N N N -27.097 -12.029 13.306 -4.537  0.526  1.122  O37  YRX 37 
YRX O39  O6  O 0 1 N N N N N N -25.405 -10.467 12.701 -3.244  2.294  1.613  O39  YRX 38 
YRX S16  S1  S 0 1 N N N N N N -20.304 -11.669 3.284  7.947   -0.286 0.887  S16  YRX 39 
YRX H173 H1  H 0 0 N N N N N N -21.152 -9.922  4.741  9.417   -1.863 1.960  H173 YRX 40 
YRX H171 H2  H 0 0 N N N N N N -19.699 -9.383  3.832  9.902   -1.552 0.276  H171 YRX 41 
YRX H172 H3  H 0 0 N N N N N N -21.293 -9.470  3.008  10.263  -0.354 1.541  H172 YRX 42 
YRX H361 H4  H 0 0 N N N N N N -28.065 -13.360 16.979 -6.691  -2.946 1.014  H361 YRX 43 
YRX H362 H5  H 0 0 N N N N N N -28.854 -11.806 16.546 -7.314  -2.474 -0.627 H362 YRX 44 
YRX H011 H6  H 0 0 N N N N N N -23.490 -12.027 16.520 -4.120  4.041  -1.373 H011 YRX 45 
YRX H013 H7  H 0 0 N N N N N N -23.225 -13.657 15.814 -3.190  4.187  0.137  H013 YRX 46 
YRX H012 H8  H 0 0 N N N N N N -21.887 -12.459 15.834 -2.473  4.717  -1.403 H012 YRX 47 
YRX H021 H9  H 0 0 N N N N N N -23.174 -11.002 14.286 -2.489  2.374  -2.216 H021 YRX 48 
YRX H121 H10 H 0 0 N N N N N N -22.148 -13.840 8.072  3.713   0.038  -2.538 H121 YRX 49 
YRX H131 H11 H 0 0 N N N N N N -21.105 -14.098 5.849  5.978   -0.766 -2.022 H131 YRX 50 
YRX H152 H12 H 0 0 N N N N N N -19.244 -13.555 4.378  6.875   -2.429 1.124  H152 YRX 51 
YRX H151 H13 H 0 0 N N N N N N -18.305 -12.040 4.605  7.360   -2.118 -0.561 H151 YRX 52 
YRX H221 H14 H 0 0 N N N N N N -19.992 -10.191 8.651  2.540   -0.709 1.519  H221 YRX 53 
YRX H241 H15 H 0 0 N N N N N N -21.012 -14.636 10.223 2.338   2.335  1.059  H241 YRX 54 
YRX H251 H16 H 0 0 N N N N N N -21.447 -15.854 12.334 0.808   4.151  1.637  H251 YRX 55 
YRX H261 H17 H 0 0 N N N N N N -22.555 -14.714 14.233 -1.431  4.263  0.627  H261 YRX 56 
YRX H1   H18 H 0 1 N N N N N N -25.645 -13.305 15.722 -3.443  -0.165 -1.694 H1   YRX 57 
YRX H281 H19 H 0 0 N N N N N N -25.243 -14.288 14.273 -4.847  0.922  -1.937 H281 YRX 58 
YRX H2   H20 H 0 1 N N N N N N -27.258 -12.555 15.015 -4.578  -1.251 -0.006 H2   YRX 59 
YRX H301 H21 H 0 0 N N N N N N -28.538 -14.569 13.516 -6.729  0.902  -0.337 H301 YRX 60 
YRX H302 H22 H 0 0 N N N N N N -27.792 -14.936 15.108 -6.657  -0.616 -1.263 H302 YRX 61 
YRX H322 H23 H 0 0 N N N N N N -31.225 -14.501 15.148 -8.926  -0.306 -0.274 H322 YRX 62 
YRX H321 H24 H 0 0 N N N N N N -29.890 -15.433 15.905 -8.937  0.068  1.505  H321 YRX 63 
YRX H342 H25 H 0 0 N N N N N N -31.148 -13.875 18.854 -9.633  -3.842 0.162  H342 YRX 64 
YRX H343 H26 H 0 0 N N N N N N -32.027 -14.649 17.493 -10.797 -2.602 0.688  H343 YRX 65 
YRX H341 H27 H 0 0 N N N N N N -30.454 -15.320 18.044 -9.845  -2.356 -0.795 H341 YRX 66 
YRX H051 H28 H 0 0 N N N N N N -23.178 -10.205 12.265 -1.242  0.180  -2.255 H051 YRX 67 
YRX H351 H30 H 0 0 N N N N N N -30.663 -11.905 18.209 -9.759  -2.255 2.808  H351 YRX 68 
YRX H352 H31 H 0 0 N N N N N N -30.733 -11.453 16.642 -8.487  -3.317 2.663  H352 YRX 69 
YRX H5   H33 H 0 1 N N N N N N -22.587 -7.479  9.891  0.199   -2.878 -3.779 H5   YRX 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YRX O18 S16  DOUB N N 1  
YRX O19 S16  DOUB N N 2  
YRX S16 C17  SING N N 3  
YRX S16 C15  SING N N 4  
YRX C15 C14  SING N N 5  
YRX C14 C13  DOUB Y N 6  
YRX C14 C20  SING Y N 7  
YRX F21 C20  SING N N 8  
YRX C13 C12  SING Y N 9  
YRX C20 C22  DOUB Y N 10 
YRX C12 C11  DOUB Y N 11 
YRX C22 C11  SING Y N 12 
YRX C11 C10  SING N N 13 
YRX O09 C07  DOUB N N 14 
YRX C07 C06  SING N N 15 
YRX C07 O08  SING N N 16 
YRX C10 C06  DOUB Y N 17 
YRX C10 C23  SING Y N 18 
YRX C06 N05  SING Y N 19 
YRX C23 C24  DOUB Y N 20 
YRX C23 C04  SING Y N 21 
YRX C24 C25  SING Y N 22 
YRX N05 C04  SING Y N 23 
YRX C04 C03  DOUB Y N 24 
YRX C25 C26  DOUB Y N 25 
YRX O39 C38  DOUB N N 26 
YRX C03 C26  SING Y N 27 
YRX C03 C02  SING N N 28 
YRX C38 O37  SING N N 29 
YRX C38 N27  SING N N 30 
YRX O37 C29  SING N N 31 
YRX C29 C30  SING N N 32 
YRX C29 C28  SING N N 33 
YRX N27 C02  SING N N 34 
YRX N27 C28  SING N N 35 
YRX C02 C01  SING N N 36 
YRX C30 N31  SING N N 37 
YRX N31 C32  SING N N 38 
YRX N31 C36  SING N N 39 
YRX C32 C33  SING N N 40 
YRX C36 C33  SING N N 41 
YRX C33 N35  SING N N 42 
YRX C33 C34  SING N N 43 
YRX C17 H173 SING N N 44 
YRX C17 H171 SING N N 45 
YRX C17 H172 SING N N 46 
YRX C36 H361 SING N N 47 
YRX C36 H362 SING N N 48 
YRX C01 H011 SING N N 49 
YRX C01 H013 SING N N 50 
YRX C01 H012 SING N N 51 
YRX C02 H021 SING N N 52 
YRX C12 H121 SING N N 53 
YRX C13 H131 SING N N 54 
YRX C15 H152 SING N N 55 
YRX C15 H151 SING N N 56 
YRX C22 H221 SING N N 57 
YRX C24 H241 SING N N 58 
YRX C25 H251 SING N N 59 
YRX C26 H261 SING N N 60 
YRX C28 H1   SING N N 61 
YRX C28 H281 SING N N 62 
YRX C29 H2   SING N N 63 
YRX C30 H301 SING N N 64 
YRX C30 H302 SING N N 65 
YRX C32 H322 SING N N 66 
YRX C32 H321 SING N N 67 
YRX C34 H342 SING N N 68 
YRX C34 H343 SING N N 69 
YRX C34 H341 SING N N 70 
YRX N05 H051 SING N N 71 
YRX N35 H351 SING N N 72 
YRX N35 H352 SING N N 73 
YRX O08 H5   SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YRX InChI            InChI                1.06  "InChI=1S/C27H31FN4O6S/c1-15(32-11-18(38-26(32)35)10-31-13-27(2,29)14-31)19-5-4-6-20-22(24(25(33)34)30-23(19)20)16-7-8-17(21(28)9-16)12-39(3,36)37/h4-9,15,18,30H,10-14,29H2,1-3H3,(H,33,34)/t15-,18-/m0/s1" 
YRX InChIKey         InChI                1.06  WWAISRYXVOSNGI-YJBOKZPZSA-N                                                                                                                                                                                  
YRX SMILES_CANONICAL CACTVS               3.385 "C[C@H](N1C[C@H](CN2CC(C)(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(C[S](C)(=O)=O)c(F)c5"                                                                                                                     
YRX SMILES           CACTVS               3.385 "C[CH](N1C[CH](CN2CC(C)(N)C2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(C[S](C)(=O)=O)c(F)c5"                                                                                                                       
YRX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)(C)N"                                                                                                                          
YRX SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4CC(OC4=O)CN5CC(C5)(C)N"                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           YRX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[5-[(3-azanyl-3-methyl-azetidin-1-yl)methyl]-2-oxidanylidene-1,3-oxazolidin-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YRX "Create component" 2023-06-20 PDBE 
YRX "Initial release"  2024-07-10 RCSB 
# 
