data_YNX
# 
_chem_comp.id                                    YNX 
_chem_comp.name                                  "(2E)-1-[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H20 F3 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        471.432 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YNX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G4F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YNX C01 C1  C 0 1 N N N N N N -12.354 9.803  48.256 1.339  -2.078 0.426  C01 YNX 1  
YNX C04 C2  C 0 1 N N R N N N -12.148 11.045 49.109 2.179  -0.874 0.056  C04 YNX 2  
YNX C05 C3  C 0 1 N N R N N N -13.335 11.026 49.957 1.442  0.190  0.966  C05 YNX 3  
YNX C06 C4  C 0 1 N N N N N N -13.107 12.355 50.645 2.288  1.397  0.718  C06 YNX 4  
YNX C11 C5  C 0 1 N N N N N N -11.192 12.805 52.206 4.800  1.593  0.454  C11 YNX 5  
YNX C15 C6  C 0 1 Y N N N N N -8.207  10.957 53.630 7.483  -1.022 0.474  C15 YNX 6  
YNX C16 C7  C 0 1 Y N N N N N -8.904  13.612 52.887 7.121  1.598  -0.424 C16 YNX 7  
YNX C17 C8  C 0 1 Y N N N N N -7.592  13.324 53.425 8.343  0.956  -0.641 C17 YNX 8  
YNX C18 C9  C 0 1 Y N N N N N -7.256  12.047 53.786 8.518  -0.365 -0.186 C18 YNX 9  
YNX C22 C10 C 0 1 N N N N N N -14.410 8.635  47.440 -1.172 -2.246 0.107  C22 YNX 10 
YNX C24 C11 C 0 1 N N N N N N -13.522 7.673  46.694 -2.470 -1.575 0.061  C24 YNX 11 
YNX C25 C12 C 0 1 N N N N N N -14.045 6.574  46.200 -3.591 -2.288 -0.181 C25 YNX 12 
YNX C26 C13 C 0 1 Y N N N N N -13.205 5.838  45.188 -4.896 -1.613 -0.228 C26 YNX 13 
YNX C27 C14 C 0 1 Y N N N N N -12.375 6.585  44.330 -6.059 -2.350 -0.478 C27 YNX 14 
YNX C28 C15 C 0 1 Y N N N N N -11.597 5.889  43.370 -7.279 -1.713 -0.521 C28 YNX 15 
YNX N02 N1  N 0 1 N N N N N N -13.781 9.670  48.186 -0.054 -1.534 0.349  N02 YNX 16 
YNX C03 C16 C 0 1 N N N N N N -14.433 10.703 48.970 0.019  -0.061 0.587  C03 YNX 17 
YNX N07 N2  N 0 1 N N N N N N -11.760 12.120 51.067 3.674  0.862  0.565  N07 YNX 18 
YNX C08 C17 C 0 1 N N N N N N -11.122 11.148 50.203 3.587  -0.633 0.557  C08 YNX 19 
YNX C12 C18 C 0 1 Y N N N N N -9.799  12.563 52.727 6.096  0.922  0.226  C12 YNX 20 
YNX O13 O1  O 0 1 N N N N N N -11.905 13.570 52.792 4.750  2.804  0.541  O13 YNX 21 
YNX C14 C19 C 0 1 Y N N N N N -9.448  11.242 53.113 6.292  -0.391 0.678  C14 YNX 22 
YNX N19 N3  N 0 1 Y N N N N N -5.965  12.053 54.279 9.797  -0.721 -0.537 N19 YNX 23 
YNX N20 N4  N 0 1 Y N N N N N -5.503  13.334 54.205 10.357 0.385  -1.192 N20 YNX 24 
YNX N21 N5  N 0 1 Y N N N N N -6.514  14.128 53.681 9.496  1.339  -1.238 N21 YNX 25 
YNX O23 O2  O 0 1 N N N N N N -15.629 8.497  47.402 -1.102 -3.448 -0.072 O23 YNX 26 
YNX C29 C20 C 0 1 Y N N N N N -11.655 4.514  43.283 -7.357 -0.340 -0.317 C29 YNX 27 
YNX C30 C21 C 0 1 Y N N N N N -12.500 3.765  44.139 -6.204 0.396  -0.068 C30 YNX 28 
YNX C31 C22 C 0 1 Y N N N N N -13.274 4.461  45.107 -4.980 -0.232 -0.016 C31 YNX 29 
YNX O32 O3  O 0 1 N N N N N N -10.862 3.870  42.286 -8.562 0.283  -0.361 O32 YNX 30 
YNX C33 C23 C 0 1 N N N N N N -10.567 2.529  42.457 -8.570 1.695  -0.142 C33 YNX 31 
YNX F34 F1  F 0 1 N N N N N N -9.797  2.505  43.536 -7.787 2.322  -1.117 F34 YNX 32 
YNX F35 F2  F 0 1 N N N N N N -9.991  2.026  41.360 -9.883 2.171  -0.221 F35 YNX 33 
YNX F36 F3  F 0 1 N N N N N N -11.662 1.847  42.687 -8.049 1.974  1.126  F36 YNX 34 
YNX H37 H1  H 0 1 N N N N N N -11.901 8.921  48.732 1.481  -2.885 -0.292 H37 YNX 35 
YNX H38 H2  H 0 1 N N N N N N -11.923 9.940  47.253 1.569  -2.413 1.438  H38 YNX 36 
YNX H09 H3  H 0 1 N N N N N N -12.127 11.944 48.475 2.083  -0.637 -1.004 H09 YNX 37 
YNX H10 H4  H 0 1 N N N N N N -13.259 10.215 50.696 1.573  -0.119 2.003  H10 YNX 38 
YNX H42 H5  H 0 1 N N N N N N -13.186 13.205 49.951 1.972  1.902  -0.195 H42 YNX 39 
YNX H41 H6  H 0 1 N N N N N N -13.790 12.510 51.493 2.235  2.078  1.568  H41 YNX 40 
YNX H46 H7  H 0 1 N N N N N N -7.944  9.949  53.914 7.622  -2.035 0.821  H46 YNX 41 
YNX H47 H8  H 0 1 N N N N N N -9.181  14.620 52.616 6.971  2.611  -0.767 H47 YNX 42 
YNX H49 H9  H 0 1 N N N N N N -12.470 7.884  46.567 -2.533 -0.508 0.220  H49 YNX 43 
YNX H50 H10 H 0 1 N N N N N N -15.019 6.219  46.501 -3.528 -3.354 -0.340 H50 YNX 44 
YNX H51 H11 H 0 1 N N N N N N -12.332 7.662  44.401 -6.000 -3.417 -0.638 H51 YNX 45 
YNX H52 H12 H 0 1 N N N N N N -10.953 6.441  42.701 -8.177 -2.281 -0.715 H52 YNX 46 
YNX H40 H13 H 0 1 N N N N N N -14.697 11.576 48.354 -0.647 0.226  1.401  H40 YNX 47 
YNX H39 H14 H 0 1 N N N N N N -15.334 10.324 49.474 -0.234 0.484  -0.323 H39 YNX 48 
YNX H43 H15 H 0 1 N N N N N N -10.974 10.185 50.714 3.714  -1.034 1.562  H43 YNX 49 
YNX H44 H16 H 0 1 N N N N N N -10.157 11.514 49.822 4.320  -1.060 -0.127 H44 YNX 50 
YNX H45 H17 H 0 1 N N N N N N -10.170 10.447 52.998 5.493  -0.907 1.190  H45 YNX 51 
YNX H48 H18 H 0 1 N N N N N N -5.461  11.262 54.627 10.228 -1.573 -0.366 H48 YNX 52 
YNX H53 H19 H 0 1 N N N N N N -12.555 2.689  44.058 -6.270 1.463  0.090  H53 YNX 53 
YNX H54 H20 H 0 1 N N N N N N -13.917 3.913  45.780 -4.086 0.341  0.182  H54 YNX 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YNX C01 N02 SING N N 1  
YNX N02 C03 SING N N 2  
YNX C01 C04 SING N N 3  
YNX C03 C05 SING N N 4  
YNX C04 C05 SING N N 5  
YNX C05 C06 SING N N 6  
YNX C06 N07 SING N N 7  
YNX C04 C08 SING N N 8  
YNX N07 C08 SING N N 9  
YNX N07 C11 SING N N 10 
YNX C11 C12 SING N N 11 
YNX C11 O13 DOUB N N 12 
YNX C12 C14 DOUB Y N 13 
YNX C14 C15 SING Y N 14 
YNX C12 C16 SING Y N 15 
YNX C16 C17 DOUB Y N 16 
YNX C15 C18 DOUB Y N 17 
YNX C17 C18 SING Y N 18 
YNX C18 N19 SING Y N 19 
YNX N19 N20 SING Y N 20 
YNX C17 N21 SING Y N 21 
YNX N20 N21 DOUB Y N 22 
YNX N02 C22 SING N N 23 
YNX C22 O23 DOUB N N 24 
YNX C22 C24 SING N N 25 
YNX C24 C25 DOUB N E 26 
YNX C25 C26 SING N N 27 
YNX C26 C27 DOUB Y N 28 
YNX C27 C28 SING Y N 29 
YNX C28 C29 DOUB Y N 30 
YNX C29 C30 SING Y N 31 
YNX C26 C31 SING Y N 32 
YNX C30 C31 DOUB Y N 33 
YNX C29 O32 SING N N 34 
YNX O32 C33 SING N N 35 
YNX C33 F34 SING N N 36 
YNX C33 F35 SING N N 37 
YNX C33 F36 SING N N 38 
YNX C01 H37 SING N N 39 
YNX C01 H38 SING N N 40 
YNX C04 H09 SING N N 41 
YNX C05 H10 SING N N 42 
YNX C06 H42 SING N N 43 
YNX C06 H41 SING N N 44 
YNX C15 H46 SING N N 45 
YNX C16 H47 SING N N 46 
YNX C24 H49 SING N N 47 
YNX C25 H50 SING N N 48 
YNX C27 H51 SING N N 49 
YNX C28 H52 SING N N 50 
YNX C03 H40 SING N N 51 
YNX C03 H39 SING N N 52 
YNX C08 H43 SING N N 53 
YNX C08 H44 SING N N 54 
YNX C14 H45 SING N N 55 
YNX N19 H48 SING N N 56 
YNX C30 H53 SING N N 57 
YNX C31 H54 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YNX SMILES           ACDLabs              12.01 "FC(F)(F)Oc1ccc(cc1)/C=C/C(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                    
YNX InChI            InChI                1.06  "InChI=1S/C23H20F3N5O3/c24-23(25,26)34-18-5-1-14(2-6-18)3-8-21(32)30-10-16-12-31(13-17(16)11-30)22(33)15-4-7-19-20(9-15)28-29-27-19/h1-9,16-17H,10-13H2,(H,27,28,29)" 
YNX InChIKey         InChI                1.06  UTYYEESWVZZXSP-UHFFFAOYSA-N                                                                                                                                           
YNX SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)Oc1ccc(/C=C/C(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5[nH]nnc5c4)cc1"                                                                                           
YNX SMILES           CACTVS               3.385 "FC(F)(F)Oc1ccc(C=CC(=O)N2C[CH]3CN(C[CH]3C2)C(=O)c4ccc5[nH]nnc5c4)cc1"                                                                                                
YNX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1/C=C/C(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F"                                                                                         
YNX SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=CC(=O)N2CC3CN(CC3C2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F"                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YNX "SYSTEMATIC NAME" ACDLabs              12.01 "(2E)-1-[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]prop-2-en-1-one"                                      
YNX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-1-[(3~{a}~{R},6~{a}~{R})-5-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-3-[4-(trifluoromethyloxy)phenyl]prop-2-en-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YNX "Create component" 2023-06-19 RCSB 
YNX "Initial release"  2024-12-18 RCSB 
# 
