data_YKX
# 
_chem_comp.id                                    YKX 
_chem_comp.name                                  "N-[(1'S,3aS,5R,15S,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-17-methyl-13,15-dioxo-2,3,3',3a,4,4',13,16,17,18,21,21a-dodecahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-(ethanediylidene)-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalen]-15-yl]-3-methoxy-1-methyl-1H-pyrazole-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C38 H45 Cl F N5 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-09 
_chem_comp.pdbx_modified_date                    2023-05-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        770.310 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YKX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G3W 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YKX C1   C1  C  0 1 N N N -24.860 58.752 7.309  10.443 0.315  -1.292 C1   YKX 1  
YKX C3   C2  C  0 1 Y N N -23.044 58.378 5.798  8.238  1.204  -1.252 C3   YKX 2  
YKX C6   C3  C  0 1 N N N -23.476 58.582 2.230  7.205  3.943  -3.369 C6   YKX 3  
YKX C7   C4  C  0 1 Y N N -21.750 58.127 3.989  6.357  2.388  -1.609 C7   YKX 4  
YKX C8   C5  C  0 1 Y N N -21.731 58.076 5.373  6.884  1.351  -0.862 C8   YKX 5  
YKX C15  C6  C  0 1 N N N -15.961 55.960 6.041  2.224  1.399  1.840  C15  YKX 6  
YKX C17  C7  C  0 1 Y N N -15.145 55.497 4.916  0.768  1.691  1.820  C17  YKX 7  
YKX C18  C8  C  0 1 Y N N -15.622 54.555 3.963  0.279  2.921  2.308  C18  YKX 8  
YKX C19  C9  C  0 1 Y N N -14.832 54.208 2.915  -1.062 3.089  2.469  C19  YKX 9  
YKX C23  C10 C  0 1 N N S -10.492 55.185 1.733  -4.525 1.220  0.737  C23  YKX 10 
YKX C24  C11 C  0 1 N N N -9.234  54.935 2.569  -4.740 0.121  1.765  C24  YKX 11 
YKX C27  C12 C  0 1 Y N N -8.849  55.547 -0.172 -6.917 0.765  0.018  C27  YKX 12 
YKX C31  C13 C  0 1 Y N N -10.906 55.587 -2.020 -6.793 2.875  -1.764 C31  YKX 13 
YKX C32  C14 C  0 1 Y N N -11.177 55.423 -0.690 -5.701 2.555  -0.985 C32  YKX 14 
YKX C33  C15 C  0 1 Y N N -10.152 55.387 0.267  -5.757 1.497  -0.084 C33  YKX 15 
YKX C34  C16 C  0 1 N N N -11.175 56.432 2.250  -3.296 0.953  -0.117 C34  YKX 16 
YKX C36  C17 C  0 1 N N N -11.167 57.160 4.615  -1.546 -0.603 -0.474 C36  YKX 17 
YKX C37  C18 C  0 1 N N S -11.748 58.599 4.663  -2.073 -1.961 -0.888 C37  YKX 18 
YKX C39  C19 C  0 1 N N N -11.314 59.489 3.479  -3.510 -1.908 -1.442 C39  YKX 19 
YKX C40  C20 C  0 1 N N N -11.300 60.903 4.082  -4.116 -3.235 -0.938 C40  YKX 20 
YKX O41  O1  O  0 1 N N N -11.005 60.744 5.464  -3.448 -3.530 0.293  O41  YKX 21 
YKX O2   O2  O  0 1 N N N -23.476 58.434 7.087  9.118  0.293  -0.758 O2   YKX 22 
YKX N4   N1  N  0 1 Y N N -23.773 58.587 4.728  8.491  2.095  -2.175 N4   YKX 23 
YKX N5   N2  N  0 1 Y N N -22.991 58.430 3.595  7.332  2.844  -2.409 N5   YKX 24 
YKX C9   C21 C  0 1 N N N -20.586 57.781 6.259  6.172  0.551  0.148  C9   YKX 25 
YKX O10  O3  O  0 1 N N N -20.637 58.046 7.444  6.753  -0.340 0.738  O10  YKX 26 
YKX N11  N3  N  0 1 N N N -19.494 57.193 5.756  4.876  0.805  0.418  N11  YKX 27 
YKX S12  S1  S  0 1 N N S -18.187 56.851 6.680  4.042  -0.174 1.451  S12  YKX 28 
YKX O13  O4  O  0 1 N N N -18.571 55.896 7.655  4.506  0.037  2.770  O13  YKX 29 
YKX N14  N4  N  0 1 N N N -17.194 56.298 5.717  2.578  0.193  1.394  N14  YKX 30 
YKX O16  O5  O  0 1 N N N -15.483 56.071 7.162  3.034  2.212  2.260  O16  YKX 31 
YKX C20  C22 C  0 1 Y N N -13.549 54.761 2.757  -1.953 2.095  2.040  C20  YKX 32 
YKX O21  O6  O  0 1 N N N -12.811 54.340 1.690  -3.226 2.237  2.448  O21  YKX 33 
YKX C22  C23 C  0 1 N N N -11.437 53.956 1.869  -4.242 2.534  1.510  C22  YKX 34 
YKX C25  C24 C  0 1 N N N -8.041  55.834 2.191  -5.647 -0.983 1.224  C25  YKX 35 
YKX C26  C25 C  0 1 N N N -7.654  55.520 0.761  -7.036 -0.400 0.966  C26  YKX 36 
YKX C28  C26 C  0 1 Y N N -8.582  55.723 -1.521 -8.018 1.087  -0.762 C28  YKX 37 
YKX C29  C27 C  0 1 Y N N -9.605  55.741 -2.446 -7.960 2.140  -1.653 C29  YKX 38 
YKX CL30 CL1 CL 0 0 N N N -9.279  55.958 -4.124 -9.342 2.541  -2.626 CL30 YKX 39 
YKX N35  N5  N  0 1 N N N -11.817 56.354 3.543  -2.326 0.073  0.593  N35  YKX 40 
YKX C42  C28 C  0 1 N N R -11.176 59.378 5.867  -2.124 -2.966 0.276  C42  YKX 41 
YKX C44  C29 C  0 1 N N R -12.042 59.299 7.125  -1.137 -4.109 0.118  C44  YKX 42 
YKX O46  O7  O  0 1 N N N -11.398 59.912 8.249  -1.699 -5.083 -0.768 O46  YKX 43 
YKX C47  C30 C  0 1 N N N -10.274 59.242 8.829  -1.273 -6.422 -0.506 C47  YKX 44 
YKX C48  C31 C  0 1 N N N -13.356 60.029 6.941  0.215  -3.723 -0.397 C48  YKX 45 
YKX F49  F1  F  0 1 N N N -13.334 61.298 6.526  0.370  -3.198 -1.630 F49  YKX 46 
YKX C50  C32 C  0 1 N N N -14.508 59.455 7.182  1.271  -3.916 0.366  C50  YKX 47 
YKX C51  C33 C  0 1 N N N -15.813 60.197 7.018  2.661  -3.637 -0.133 C51  YKX 48 
YKX C52  C34 C  0 1 N N S -16.847 59.299 6.337  2.970  -2.145 -0.094 C52  YKX 49 
YKX C54  C35 C  0 1 N N N -17.900 60.156 5.634  3.317  -1.668 -1.507 C54  YKX 50 
YKX C55  C36 C  0 1 N N N -17.529 58.404 7.384  4.163  -1.885 0.838  C55  YKX 51 
YKX C56  C37 C  0 1 Y N N -13.026 55.745 3.716  -1.473 0.938  1.290  C56  YKX 52 
YKX C57  C38 C  0 1 Y N N -13.902 56.087 4.775  -0.095 0.732  1.296  C57  YKX 53 
YKX H1   H1  H  0 1 N N N -25.066 58.762 8.390  11.041 -0.460 -0.812 H1   YKX 54 
YKX H2   H2  H  0 1 N N N -25.081 59.742 6.885  10.405 0.133  -2.366 H2   YKX 55 
YKX H3   H3  H  0 1 N N N -25.493 57.995 6.823  10.894 1.290  -1.104 H3   YKX 56 
YKX H4   H4  H  0 1 N N N -24.546 58.837 2.247  7.458  4.884  -2.880 H4   YKX 57 
YKX H5   H5  H  0 1 N N N -22.915 59.385 1.729  7.883  3.775  -4.206 H5   YKX 58 
YKX H6   H6  H  0 1 N N N -23.333 57.638 1.683  6.179  3.989  -3.736 H6   YKX 59 
YKX H7   H7  H  0 1 N N N -20.906 57.952 3.339  5.345  2.761  -1.558 H7   YKX 60 
YKX H8   H8  H  0 1 N N N -16.604 54.120 4.072  0.963  3.715  2.570  H8   YKX 61 
YKX H9   H9  H  0 1 N N N -15.195 53.495 2.190  -1.448 4.004  2.898  H9   YKX 62 
YKX H10  H10 H  0 1 N N N -9.480  55.113 3.626  -3.781 -0.308 2.058  H10  YKX 63 
YKX H11  H11 H  0 1 N N N -8.932  53.886 2.435  -5.205 0.555  2.658  H11  YKX 64 
YKX H12  H12 H  0 1 N N N -11.713 55.596 -2.738 -6.735 3.698  -2.461 H12  YKX 65 
YKX H13  H13 H  0 1 N N N -12.203 55.319 -0.369 -4.793 3.131  -1.079 H13  YKX 66 
YKX H14  H14 H  0 1 N N N -10.414 57.225 2.307  -3.567 0.508  -1.061 H14  YKX 67 
YKX H15  H15 H  0 1 N N N -11.945 56.714 1.517  -2.782 1.900  -0.308 H15  YKX 68 
YKX H16  H16 H  0 1 N N N -11.338 56.671 5.585  -0.517 -0.735 -0.189 H16  YKX 69 
YKX H17  H17 H  0 1 N N N -10.086 57.215 4.417  -1.572 0.047  -1.355 H17  YKX 70 
YKX H18  H18 H  0 1 N N N -12.846 58.560 4.725  -1.427 -2.371 -1.685 H18  YKX 71 
YKX H19  H19 H  0 1 N N N -12.035 59.421 2.651  -4.068 -1.071 -1.035 H19  YKX 72 
YKX H20  H20 H  0 1 N N N -10.314 59.205 3.119  -3.504 -1.881 -2.532 H20  YKX 73 
YKX H21  H21 H  0 1 N N N -10.528 61.517 3.596  -5.182 -3.115 -0.766 H21  YKX 74 
YKX H22  H22 H  0 1 N N N -12.282 61.381 3.955  -3.932 -4.023 -1.663 H22  YKX 75 
YKX H23  H23 H  0 1 N N N -19.476 56.955 4.785  4.434  1.563  0.004  H23  YKX 76 
YKX H26  H26 H  0 1 N N N -11.314 53.517 2.870  -3.903 3.297  0.814  H26  YKX 77 
YKX H27  H27 H  0 1 N N N -11.170 53.210 1.106  -5.148 2.854  2.018  H27  YKX 78 
YKX H28  H28 H  0 1 N N N -7.193  55.630 2.861  -5.239 -1.381 0.298  H28  YKX 79 
YKX H29  H29 H  0 1 N N N -8.329  56.892 2.276  -5.725 -1.786 1.960  H29  YKX 80 
YKX H30  H30 H  0 1 N N N -7.201  54.518 0.728  -7.468 -0.063 1.906  H30  YKX 81 
YKX H31  H31 H  0 1 N N N -6.921  56.266 0.420  -7.672 -1.164 0.522  H31  YKX 82 
YKX H32  H32 H  0 1 N N N -7.561  55.847 -1.851 -8.926 0.509  -0.674 H32  YKX 83 
YKX H33  H33 H  0 1 N N N -10.192 58.948 6.107  -1.955 -2.446 1.220  H33  YKX 84 
YKX H34  H34 H  0 1 N N N -12.251 58.241 7.343  -1.008 -4.584 1.097  H34  YKX 85 
YKX H35  H35 H  0 1 N N N -9.892  59.832 9.675  -0.189 -6.484 -0.605 H35  YKX 86 
YKX H36  H36 H  0 1 N N N -10.583 58.248 9.185  -1.562 -6.703 0.507  H36  YKX 87 
YKX H37  H37 H  0 1 N N N -9.483  59.131 8.073  -1.742 -7.099 -1.219 H37  YKX 88 
YKX H38  H38 H  0 1 N N N -14.525 58.425 7.506  1.133  -4.317 1.362  H38  YKX 89 
YKX H39  H39 H  0 1 N N N -15.647 61.093 6.402  3.380  -4.169 0.490  H39  YKX 90 
YKX H40  H40 H  0 1 N N N -16.188 60.497 8.008  2.750  -3.992 -1.161 H40  YKX 91 
YKX H41  H41 H  0 1 N N N -16.342 58.664 5.594  2.096  -1.607 0.267  H41  YKX 92 
YKX H42  H42 H  0 1 N N N -18.639 59.503 5.147  2.471  -1.850 -2.169 H42  YKX 93 
YKX H43  H43 H  0 1 N N N -18.406 60.795 6.373  3.540  -0.601 -1.485 H43  YKX 94 
YKX H44  H44 H  0 1 N N N -17.413 60.787 4.876  4.187  -2.214 -1.871 H44  YKX 95 
YKX H45  H45 H  0 1 N N N -16.793 58.152 8.162  5.095  -2.013 0.289  H45  YKX 96 
YKX H46  H46 H  0 1 N N N -18.361 58.964 7.835  4.133  -2.578 1.678  H46  YKX 97 
YKX H47  H47 H  0 1 N N N -13.590 56.830 5.494  0.354  -0.193 0.966  H47  YKX 98 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YKX CL30 C29 SING N N 1   
YKX C29  C31 DOUB Y N 2   
YKX C29  C28 SING Y N 3   
YKX C31  C32 SING Y N 4   
YKX C28  C27 DOUB Y N 5   
YKX C32  C33 DOUB Y N 6   
YKX C27  C33 SING Y N 7   
YKX C27  C26 SING N N 8   
YKX C33  C23 SING N N 9   
YKX C26  C25 SING N N 10  
YKX O21  C22 SING N N 11  
YKX O21  C20 SING N N 12  
YKX C23  C22 SING N N 13  
YKX C23  C34 SING N N 14  
YKX C23  C24 SING N N 15  
YKX C25  C24 SING N N 16  
YKX C6   N5  SING N N 17  
YKX C34  N35 SING N N 18  
YKX C20  C19 DOUB Y N 19  
YKX C20  C56 SING Y N 20  
YKX C19  C18 SING Y N 21  
YKX C39  C40 SING N N 22  
YKX C39  C37 SING N N 23  
YKX N35  C56 SING N N 24  
YKX N35  C36 SING N N 25  
YKX N5   C7  SING Y N 26  
YKX N5   N4  SING Y N 27  
YKX C56  C57 DOUB Y N 28  
YKX C18  C17 DOUB Y N 29  
YKX C7   C8  DOUB Y N 30  
YKX C40  O41 SING N N 31  
YKX C36  C37 SING N N 32  
YKX C37  C42 SING N N 33  
YKX N4   C3  DOUB Y N 34  
YKX C57  C17 SING Y N 35  
YKX C17  C15 SING N N 36  
YKX C8   C3  SING Y N 37  
YKX C8   C9  SING N N 38  
YKX O41  C42 SING N N 39  
YKX C54  C52 SING N N 40  
YKX N14  C15 SING N N 41  
YKX N14  S12 DOUB N N 42  
YKX N11  C9  SING N N 43  
YKX N11  S12 SING N N 44  
YKX C3   O2  SING N N 45  
YKX C42  C44 SING N N 46  
YKX C15  O16 DOUB N N 47  
YKX C9   O10 DOUB N N 48  
YKX C52  C51 SING N N 49  
YKX C52  C55 SING N N 50  
YKX F49  C48 SING N N 51  
YKX S12  C55 SING N N 52  
YKX S12  O13 DOUB N N 53  
YKX C48  C44 SING N N 54  
YKX C48  C50 DOUB N Z 55  
YKX C51  C50 SING N N 56  
YKX O2   C1  SING N N 57  
YKX C44  O46 SING N N 58  
YKX O46  C47 SING N N 59  
YKX C1   H1  SING N N 60  
YKX C1   H2  SING N N 61  
YKX C1   H3  SING N N 62  
YKX C6   H4  SING N N 63  
YKX C6   H5  SING N N 64  
YKX C6   H6  SING N N 65  
YKX C7   H7  SING N N 66  
YKX C18  H8  SING N N 67  
YKX C19  H9  SING N N 68  
YKX C24  H10 SING N N 69  
YKX C24  H11 SING N N 70  
YKX C31  H12 SING N N 71  
YKX C32  H13 SING N N 72  
YKX C34  H14 SING N N 73  
YKX C34  H15 SING N N 74  
YKX C36  H16 SING N N 75  
YKX C36  H17 SING N N 76  
YKX C37  H18 SING N N 77  
YKX C39  H19 SING N N 78  
YKX C39  H20 SING N N 79  
YKX C40  H21 SING N N 80  
YKX C40  H22 SING N N 81  
YKX N11  H23 SING N N 82  
YKX C22  H26 SING N N 83  
YKX C22  H27 SING N N 84  
YKX C25  H28 SING N N 85  
YKX C25  H29 SING N N 86  
YKX C26  H30 SING N N 87  
YKX C26  H31 SING N N 88  
YKX C28  H32 SING N N 89  
YKX C42  H33 SING N N 90  
YKX C44  H34 SING N N 91  
YKX C47  H35 SING N N 92  
YKX C47  H36 SING N N 93  
YKX C47  H37 SING N N 94  
YKX C50  H38 SING N N 95  
YKX C51  H39 SING N N 96  
YKX C51  H40 SING N N 97  
YKX C52  H41 SING N N 98  
YKX C54  H42 SING N N 99  
YKX C54  H43 SING N N 100 
YKX C54  H44 SING N N 101 
YKX C55  H45 SING N N 102 
YKX C55  H46 SING N N 103 
YKX C57  H47 SING N N 104 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YKX SMILES           ACDLabs              12.01 "Cn1cc(c(OC)n1)C(=O)NS1(=O)=NC(=O)c2cc3N(CC4(CCCc5cc(Cl)ccc54)COc3cc2)CC2CCOC2C(OC)C(F)=CCC(C)C1"                                                                                                                                                                                                                      
YKX InChI            InChI                1.06  "InChI=1S/C38H45ClFN5O7S/c1-23-7-11-30(40)34(49-3)33-26(13-15-51-33)18-45-21-38(14-5-6-24-16-27(39)9-10-29(24)38)22-52-32-12-8-25(17-31(32)45)35(46)42-53(48,20-23)43-36(47)28-19-44(2)41-37(28)50-4/h8-12,16-17,19,23,26,33-34H,5-7,13-15,18,20-22H2,1-4H3,(H,42,43,46,47,48)/b30-11-/t23-,26-,33+,34-,38-,53-/m0/s1" 
YKX InChIKey         InChI                1.06  VFFBTCWSTVFCJE-ORYOOTSUSA-N                                                                                                                                                                                                                                                                                            
YKX SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]\1[C@@H]2OCC[C@H]2CN3C[C@@]4(CCCc5cc(Cl)ccc45)COc6ccc(cc36)C(=O)N=[S@@](=O)(C[C@@H](C)C/C=C\1F)NC(=O)c7cn(C)nc7OC"                                                                                                                                                                                            
YKX SMILES           CACTVS               3.385 "CO[CH]1[CH]2OCC[CH]2CN3C[C]4(CCCc5cc(Cl)ccc45)COc6ccc(cc36)C(=O)N=[S](=O)(C[CH](C)CC=C1F)NC(=O)c7cn(C)nc7OC"                                                                                                                                                                                                          
YKX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C/C=C(/[C@@H]([C@H]2[C@@H](CCO2)CN3C[C@@]4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)N=S(=O)(C1)NC(=O)c7cn(nc7OC)C)OC)\F"                                                                                                                                                                                             
YKX SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CC=C(C(C2C(CCO2)CN3CC4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)N=S(=O)(C1)NC(=O)c7cn(nc7OC)C)OC)F"                                                                                                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           YKX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "N-[(1'S,3aS,5R,15S,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-17-methyl-13,15-dioxo-2,3,3',3a,4,4',13,16,17,18,21,21a-dodecahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-(ethanediylidene)-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalen]-15-yl]-3-methoxy-1-methyl-1H-pyrazole-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YKX "Create component" 2023-02-09 RCSB 
YKX "Initial release"  2023-05-17 RCSB 
# 
