data_RNX
# 
_chem_comp.id                                    RNX 
_chem_comp.name                                  "1-(4-{[2-(4-{(4P)-4-[2-amino-4-(difluoromethyl)pyrimidin-5-yl]-6-[(3S)-3-methylmorpholin-4-yl]-1,3,5-triazin-2-yl}piperazin-1-yl)-2-oxoethoxy]methyl}piperidin-1-yl)prop-2-en-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H38 F2 N10 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        616.663 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RNX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TWY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RNX C10  C1  C 0 1 Y N N N N N -16.360 7.663  26.539 4.876   -1.750 -0.825 C10  RNX 1  
RNX N12  N1  N 0 1 Y N N N N N -18.246 8.841  27.592 3.092   -0.457 0.216  N12  RNX 2  
RNX C13  C2  C 0 1 Y N N N N N -18.792 9.802  28.301 2.597   0.679  0.697  C13  RNX 3  
RNX C15  C3  C 0 1 N N N N N N -21.247 9.260  27.617 0.831   -0.652 1.490  C15  RNX 4  
RNX C21  C4  C 0 1 N N N N N N -26.857 10.913 29.097 -5.784  0.827  -0.598 C21  RNX 5  
RNX C22  C5  C 0 1 N N N N N N -28.160 11.704 29.128 -7.073  0.017  -0.752 C22  RNX 6  
RNX C24  C6  C 0 1 N N N N N N -30.303 12.072 30.371 -9.322  -0.053 -1.836 C24  RNX 7  
RNX C26  C7  C 0 1 N N N N N N -32.398 11.544 28.902 -11.142 -0.096 -0.200 C26  RNX 8  
RNX C28  C8  C 0 1 N N N N N N -33.260 13.990 28.798 -13.314 0.707  -0.926 C28  RNX 9  
RNX C02  C9  C 0 1 Y N N N N N -15.356 5.626  25.124 5.876   -4.041 -1.794 C02  RNX 10 
RNX C04  C10 C 0 1 Y N N N N N -16.816 6.347  26.714 4.809   -2.933 -0.082 C04  RNX 11 
RNX C05  C11 C 0 1 N N N N N N -17.908 6.129  27.740 4.172   -2.943 1.284  C05  RNX 12 
RNX C09  C12 C 0 1 Y N N N N N -15.337 7.892  25.611 5.472   -1.794 -2.089 C09  RNX 13 
RNX C11  C13 C 0 1 Y N N N N N -16.937 8.827  27.358 4.323   -0.485 -0.290 C11  RNX 14 
RNX C16  C14 C 0 1 N N N N N N -22.553 8.944  28.345 -0.505  -0.572 2.236  C16  RNX 15 
RNX C18  C15 C 0 1 N N N N N N -24.183 10.839 28.608 -2.662  -0.149 1.147  C18  RNX 16 
RNX C19  C16 C 0 1 N N N N N N -25.131 10.283 27.535 -3.585  0.738  0.352  C19  RNX 17 
RNX C23  C17 C 0 1 N N N N N N -28.823 11.700 30.465 -8.047  0.776  -1.656 C23  RNX 18 
RNX C27  C18 C 0 1 N N N N N N -33.190 12.670 29.572 -12.046 0.441  -1.228 C27  RNX 19 
RNX C30  C19 C 0 1 N N N N N N -30.132 10.241 28.750 -8.982  -1.034 0.469  C30  RNX 20 
RNX C31  C20 C 0 1 N N N N N N -29.002 11.046 28.104 -7.710  -0.193 0.623  C31  RNX 21 
RNX C33  C21 C 0 1 N N N N N N -22.113 10.622 29.946 -0.950  1.604  1.035  C33  RNX 22 
RNX C34  C22 C 0 1 N N N N N N -20.793 10.976 29.301 0.404   1.439  0.338  C34  RNX 23 
RNX C36  C23 C 0 1 Y N N N N N -16.721 10.758 28.535 4.560   1.760  0.167  C36  RNX 24 
RNX C38  C24 C 0 1 N N N N N N -14.902 12.460 28.149 6.551   2.746  0.929  C38  RNX 25 
RNX C39  C25 C 0 1 N N N N N N -13.947 13.368 28.930 7.334   4.062  0.924  C39  RNX 26 
RNX C41  C26 C 0 1 N N N N N N -15.672 14.002 30.338 6.425   4.617  -1.221 C41  RNX 27 
RNX C42  C27 C 0 1 N N S N N N -16.554 12.938 29.694 5.634   3.307  -1.238 C42  RNX 28 
RNX C43  C28 C 0 1 N N N N N N -17.371 12.393 30.873 4.333   3.506  -2.020 C43  RNX 29 
RNX F06  F1  F 0 1 N N N N N N -17.972 4.925  28.439 4.610   -4.066 1.995  F06  RNX 30 
RNX F07  F2  F 0 1 N N N N N N -19.130 6.386  27.199 4.533   -1.782 1.976  F07  RNX 31 
RNX N01  N2  N 0 1 N N N N N N -14.824 4.511  24.353 6.391   -5.221 -2.294 N01  RNX 32 
RNX N03  N3  N 0 1 Y N N N N N -16.317 5.350  25.992 5.313   -4.041 -0.594 N03  RNX 33 
RNX N08  N4  N 0 1 Y N N N N N -14.888 6.845  24.944 5.949   -2.943 -2.533 N08  RNX 34 
RNX N14  N5  N 0 1 N N N N N N -20.222 9.793  28.582 1.321   0.707  1.222  N14  RNX 35 
RNX N17  N6  N 0 1 N N N N N N -22.985 10.127 28.966 -1.422  0.278  1.460  N17  RNX 36 
RNX N25  N7  N 0 1 N N N N N N -31.033 11.282 29.330 -9.863  -0.384 -0.511 N25  RNX 37 
RNX N35  N8  N 0 1 Y N N N N N -18.024 10.764 28.769 3.330   1.787  0.672  N35  RNX 38 
RNX N37  N9  N 0 1 N N N N N N -15.872 11.825 29.046 5.320   2.912  0.143  N37  RNX 39 
RNX N44  N10 N 0 1 Y N N N N N -16.176 9.790  27.821 5.056   0.625  -0.314 N44  RNX 40 
RNX O20  O1  O 0 1 N N N N N N -26.450 10.709 27.751 -4.832  0.069  0.150  O20  RNX 41 
RNX O29  O2  O 0 1 N N N N N N -32.895 10.865 28.065 -11.549 -0.281 0.932  O29  RNX 42 
RNX O32  O3  O 0 1 N N N N N N -24.371 11.846 29.200 -3.034  -1.246 1.506  O32  RNX 43 
RNX O40  O4  O 0 1 N N N N N N -14.592 14.414 29.578 7.602   4.446  -0.427 O40  RNX 44 
RNX H151 H1  H 0 0 N N N N N N -20.862 8.342  27.150 1.558   -1.185 2.103  H151 RNX 45 
RNX H152 H2  H 0 0 N N N N N N -21.439 10.014 26.840 0.691   -1.181 0.548  H152 RNX 46 
RNX H212 H3  H 0 0 N N N N N N -27.010 9.939  29.584 -5.377  1.053  -1.583 H212 RNX 47 
RNX H211 H4  H 0 0 N N N N N N -26.077 11.473 29.634 -6.000  1.758  -0.072 H211 RNX 48 
RNX H221 H5  H 0 0 N N N N N N -27.955 12.742 28.825 -6.843  -0.950 -1.197 H221 RNX 49 
RNX H242 H6  H 0 0 N N N N N N -30.382 13.140 30.121 -10.057 0.524  -2.397 H242 RNX 50 
RNX H241 H7  H 0 0 N N N N N N -30.775 11.888 31.347 -9.088  -0.971 -2.377 H241 RNX 51 
RNX H282 H8  H 0 0 N N N N N N -32.768 14.082 27.841 -13.977 1.102  -1.681 H282 RNX 52 
RNX H281 H9  H 0 0 N N N N N N -33.802 14.829 29.209 -13.679 0.529  0.075  H281 RNX 53 
RNX H051 H11 H 0 0 N N N N N N -17.736 6.908  28.497 3.087   -2.981 1.178  H051 RNX 54 
RNX H091 H12 H 0 0 N N N N N N -14.933 8.880  25.448 5.542   -0.901 -2.693 H091 RNX 55 
RNX H162 H13 H 0 0 N N N N N N -23.310 8.599  27.626 -0.929  -1.571 2.336  H162 RNX 56 
RNX H161 H14 H 0 0 N N N N N N -22.383 8.163  29.101 -0.349  -0.136 3.223  H161 RNX 57 
RNX H191 H15 H 0 0 N N N N N N -25.100 9.184  27.564 -3.756  1.667  0.897  H191 RNX 58 
RNX H192 H16 H 0 0 N N N N N N -24.799 10.633 26.547 -3.132  0.961  -0.614 H192 RNX 59 
RNX H231 H17 H 0 0 N N N N N N -28.737 10.694 30.901 -8.297  1.734  -1.199 H231 RNX 60 
RNX H232 H18 H 0 0 N N N N N N -28.315 12.427 31.116 -7.583  0.946  -2.628 H232 RNX 61 
RNX H272 H19 H 0 0 N N N N N N -33.670 12.542 30.531 -11.681 0.619  -2.229 H272 RNX 62 
RNX H302 H21 H 0 0 N N N N N N -30.663 9.640  27.997 -8.720  -2.032 0.119  H302 RNX 63 
RNX H301 H22 H 0 0 N N N N N N -29.740 9.580  29.537 -9.493  -1.106 1.429  H301 RNX 64 
RNX H311 H23 H 0 0 N N N N N N -28.375 10.368 27.506 -7.007  -0.713 1.275  H311 RNX 65 
RNX H312 H24 H 0 0 N N N N N N -29.438 11.815 27.450 -7.964  0.773  1.059  H312 RNX 66 
RNX H331 H25 H 0 0 N N N N N N -22.550 11.520 30.408 -0.837  2.249  1.907  H331 RNX 67 
RNX H332 H26 H 0 0 N N N N N N -21.952 9.854  30.717 -1.667  2.047  0.344  H332 RNX 68 
RNX H342 H27 H 0 0 N N N N N N -20.087 11.301 30.079 0.269   0.881  -0.589 H342 RNX 69 
RNX H341 H28 H 0 0 N N N N N N -20.950 11.794 28.583 0.820   2.421  0.113  H341 RNX 70 
RNX H382 H29 H 0 0 N N N N N N -15.442 13.062 27.403 7.162   1.958  0.488  H382 RNX 71 
RNX H381 H30 H 0 0 N N N N N N -14.319 11.679 27.638 6.295   2.479  1.954  H381 RNX 72 
RNX H391 H31 H 0 0 N N N N N N -13.424 12.760 29.683 6.745   4.838  1.413  H391 RNX 73 
RNX H392 H32 H 0 0 N N N N N N -13.214 13.791 28.227 8.275   3.928  1.458  H392 RNX 74 
RNX H411 H33 H 0 0 N N N N N N -15.286 13.596 31.285 6.709   4.884  -2.239 H411 RNX 75 
RNX H412 H34 H 0 0 N N N N N N -16.298 14.883 30.545 5.810   5.409  -0.795 H412 RNX 76 
RNX H421 H35 H 0 0 N N N N N N -17.238 13.423 28.982 6.229   2.528  -1.714 H421 RNX 77 
RNX H431 H36 H 0 0 N N N N N N -17.892 13.223 31.373 4.565   3.839  -3.032 H431 RNX 78 
RNX H432 H37 H 0 0 N N N N N N -18.109 11.666 30.503 3.788   2.563  -2.064 H432 RNX 79 
RNX H433 H38 H 0 0 N N N N N N -16.697 11.899 31.589 3.721   4.257  -1.521 H433 RNX 80 
RNX H012 H39 H 0 0 N N N N N N -14.112 4.843  23.734 6.339   -6.034 -1.768 H012 RNX 81 
RNX H011 H40 H 0 0 N N N N N N -14.435 3.831  24.975 6.806   -5.237 -3.171 H011 RNX 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RNX N01 C02  SING N N 1  
RNX N08 C02  DOUB Y N 2  
RNX N08 C09  SING Y N 3  
RNX C02 N03  SING Y N 4  
RNX C09 C10  DOUB Y N 5  
RNX N03 C04  DOUB Y N 6  
RNX C10 C04  SING Y N 7  
RNX C10 C11  SING N N 8  
RNX C04 C05  SING N N 9  
RNX F07 C05  SING N N 10 
RNX C11 N12  DOUB Y N 11 
RNX C11 N44  SING Y N 12 
RNX C19 O20  SING N N 13 
RNX C19 C18  SING N N 14 
RNX N12 C13  SING Y N 15 
RNX C15 C16  SING N N 16 
RNX C15 N14  SING N N 17 
RNX C05 F06  SING N N 18 
RNX O20 C21  SING N N 19 
RNX N44 C36  DOUB Y N 20 
RNX O29 C26  DOUB N N 21 
RNX C31 C30  SING N N 22 
RNX C31 C22  SING N N 23 
RNX C38 C39  SING N N 24 
RNX C38 N37  SING N N 25 
RNX C13 N14  SING N N 26 
RNX C13 N35  DOUB Y N 27 
RNX C16 N17  SING N N 28 
RNX C36 N35  SING Y N 29 
RNX C36 N37  SING N N 30 
RNX N14 C34  SING N N 31 
RNX C18 N17  SING N N 32 
RNX C18 O32  DOUB N N 33 
RNX C30 N25  SING N N 34 
RNX C28 C27  DOUB N N 35 
RNX C26 N25  SING N N 36 
RNX C26 C27  SING N N 37 
RNX C39 O40  SING N N 38 
RNX N17 C33  SING N N 39 
RNX N37 C42  SING N N 40 
RNX C21 C22  SING N N 41 
RNX C22 C23  SING N N 42 
RNX C34 C33  SING N N 43 
RNX N25 C24  SING N N 44 
RNX O40 C41  SING N N 45 
RNX C42 C41  SING N N 46 
RNX C42 C43  SING N N 47 
RNX C24 C23  SING N N 48 
RNX C15 H151 SING N N 49 
RNX C15 H152 SING N N 50 
RNX C21 H212 SING N N 51 
RNX C21 H211 SING N N 52 
RNX C22 H221 SING N N 53 
RNX C24 H242 SING N N 54 
RNX C24 H241 SING N N 55 
RNX C28 H282 SING N N 56 
RNX C28 H281 SING N N 57 
RNX C05 H051 SING N N 58 
RNX C09 H091 SING N N 59 
RNX C16 H162 SING N N 60 
RNX C16 H161 SING N N 61 
RNX C19 H191 SING N N 62 
RNX C19 H192 SING N N 63 
RNX C23 H231 SING N N 64 
RNX C23 H232 SING N N 65 
RNX C27 H272 SING N N 66 
RNX C30 H302 SING N N 67 
RNX C30 H301 SING N N 68 
RNX C31 H311 SING N N 69 
RNX C31 H312 SING N N 70 
RNX C33 H331 SING N N 71 
RNX C33 H332 SING N N 72 
RNX C34 H342 SING N N 73 
RNX C34 H341 SING N N 74 
RNX C38 H382 SING N N 75 
RNX C38 H381 SING N N 76 
RNX C39 H391 SING N N 77 
RNX C39 H392 SING N N 78 
RNX C41 H411 SING N N 79 
RNX C41 H412 SING N N 80 
RNX C42 H421 SING N N 81 
RNX C43 H431 SING N N 82 
RNX C43 H432 SING N N 83 
RNX C43 H433 SING N N 84 
RNX N01 H012 SING N N 85 
RNX N01 H011 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RNX SMILES           ACDLabs              12.01 "C=CC(=O)N1CCC(CC1)COCC(=O)N1CCN(CC1)c1nc(nc(n1)c1cnc(N)nc1C(F)F)N1CCOCC1C"                                                                                                                                                     
RNX InChI            InChI                1.06  "InChI=1S/C28H38F2N10O4/c1-3-21(41)37-6-4-19(5-7-37)16-44-17-22(42)38-8-10-39(11-9-38)27-34-25(20-14-32-26(31)33-23(20)24(29)30)35-28(36-27)40-12-13-43-15-18(40)2/h3,14,18-19,24H,1,4-13,15-17H2,2H3,(H2,31,32,33)/t18-/m0/s1" 
RNX InChIKey         InChI                1.06  PVVOFYPFCTWUAT-SFHVURJKSA-N                                                                                                                                                                                                     
RNX SMILES_CANONICAL CACTVS               3.385 "C[C@H]1COCCN1c2nc(nc(n2)c3cnc(N)nc3C(F)F)N4CCN(CC4)C(=O)COCC5CCN(CC5)C(=O)C=C"                                                                                                                                                 
RNX SMILES           CACTVS               3.385 "C[CH]1COCCN1c2nc(nc(n2)c3cnc(N)nc3C(F)F)N4CCN(CC4)C(=O)COCC5CCN(CC5)C(=O)C=C"                                                                                                                                                  
RNX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1COCCN1c2nc(nc(n2)N3CCN(CC3)C(=O)COCC4CCN(CC4)C(=O)C=C)c5cnc(nc5C(F)F)N"                                                                                                                                                 
RNX SMILES           "OpenEye OEToolkits" 2.0.7 "CC1COCCN1c2nc(nc(n2)N3CCN(CC3)C(=O)COCC4CCN(CC4)C(=O)C=C)c5cnc(nc5C(F)F)N"                                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RNX "SYSTEMATIC NAME" ACDLabs              12.01 "1-(4-{[2-(4-{(4P)-4-[2-amino-4-(difluoromethyl)pyrimidin-5-yl]-6-[(3S)-3-methylmorpholin-4-yl]-1,3,5-triazin-2-yl}piperazin-1-yl)-2-oxoethoxy]methyl}piperidin-1-yl)prop-2-en-1-one"                 
RNX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[[2-[4-[4-[2-azanyl-4-[bis(fluoranyl)methyl]pyrimidin-5-yl]-6-[(3~{S})-3-methylmorpholin-4-yl]-1,3,5-triazin-2-yl]piperazin-1-yl]-2-oxidanylidene-ethoxy]methyl]piperidin-1-yl]prop-2-en-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RNX "Create component" 2023-08-22 RCSB 
RNX "Initial release"  2024-08-28 RCSB 
RNX "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            RNX 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C28 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
