data_PDX
#

_chem_comp.id                                   PDX
_chem_comp.name                                 "2,3-di-O-sulfo-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O12 S2"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        "2,3-di-O-sulfo-alpha-D-glucose; 2,3-di-O-sulfo-D-glucose; 2,3-di-O-sulfo-glucose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-10-23
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       340.282
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PDX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  PDX  "2,3-di-O-sulfo-alpha-D-glucose"  PDB  ?  
2  PDX  "2,3-di-O-sulfo-D-glucose"        PDB  ?  
3  PDX  "2,3-di-O-sulfo-glucose"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PDX  C1     C1      C  0  1  N  N  S  115.053  59.032  28.188  -1.746  -0.565   0.939  C1     PDX   1  
PDX  C2     C2      C  0  1  N  N  R  114.546  57.721  28.767  -0.843   0.098  -0.102  C2     PDX   2  
PDX  C3     C3      C  0  1  N  N  S  113.222  57.332  28.120   0.603   0.077   0.405  C3     PDX   3  
PDX  C4     C4      C  0  1  N  N  R  112.179  58.450  28.199   0.641   0.710   1.800  C4     PDX   4  
PDX  C5     C5      C  0  1  N  N  R  112.764  59.715  27.604  -0.373  -0.000   2.698  C5     PDX   5  
PDX  C6     C6      C  0  1  N  N  N  111.862  60.899  27.691  -0.318   0.600   4.104  C6     PDX   6  
PDX  O1     O1      O  0  1  N  Y  N  115.399  58.809  26.855  -1.308  -1.907   1.160  O1     PDX   7  
PDX  O2     O2      O  0  1  N  N  N  115.561  56.724  28.525  -0.929  -0.617  -1.335  O2     PDX   8  
PDX  O3     O3      O  0  1  N  N  N  112.704  56.187  28.812   1.435   0.823  -0.485  O3     PDX   9  
PDX  O4     O4      O  0  1  N  N  N  110.933  58.066  27.562   1.950   0.569   2.354  O4     PDX  10  
PDX  O5     O5      O  0  1  N  N  N  114.035  60.074  28.278  -1.686   0.161   2.164  O5     PDX  11  
PDX  O6     O6      O  0  1  N  N  N  112.550  61.996  28.336  -1.263  -0.064   4.944  O6     PDX  12  
PDX  O1S    O1S     O  0  1  N  N  N  111.900  54.073  29.204  -2.005  -0.599  -3.422  O1S    PDX  13  
PDX  O2S    O2S     O  0  1  N  N  N  113.389  54.522  27.395  -2.918   0.627  -1.413  O2S    PDX  14  
PDX  O3S    O3S     O  0  1  N  N  N  117.387  57.291  30.018  -1.106   1.434  -2.669  O3S    PDX  15  
PDX  O1X    O1X     O  0  1  N  N  N  116.881  55.001  29.334   2.949  -0.837   0.191  O1X    PDX  16  
PDX  O2X    O2X     O  0  1  N  N  N  115.445  56.080  30.903   3.371   0.653  -1.802  O2X    PDX  17  
PDX  O3X    O3X     O  0  1  N  N  N  111.105  55.235  27.251   1.874  -1.153  -1.871  O3X    PDX  18  
PDX  S      S       S  0  1  N  N  N  116.287  56.155  29.673  -1.855   0.179  -2.243  S      PDX  19  
PDX  "S'"   "S'"    S  0  1  N  N  N  112.295  54.938  28.087   2.528  -0.122  -0.962  "S'"   PDX  20  
PDX  H1     H1      H  0  1  N  N  N  115.927  59.376  28.760  -2.773  -0.575   0.574  H1     PDX  21  
PDX  H2     H2      H  0  1  N  N  N  114.359  57.814  29.847  -1.160   1.129  -0.256  H2     PDX  22  
PDX  H3     H3      H  0  1  N  N  N  113.414  57.124  27.057   0.956  -0.952   0.460  H3     PDX  23  
PDX  H4     H4      H  0  1  N  N  N  111.930  58.641  29.253   0.388   1.768   1.728  H4     PDX  24  
PDX  H5     H5      H  0  1  N  N  N  112.921  59.479  26.541  -0.131  -1.062   2.749  H5     PDX  25  
PDX  H61    H6C1    H  0  1  N  N  N  111.560  61.203  26.678  -0.560   1.662   4.055  H61    PDX  26  
PDX  H62    H6C2    H  0  1  N  N  N  110.972  60.633  28.280   0.683   0.475   4.514  H62    PDX  27  
PDX  HO1    HA      H  0  1  N  Y  N  115.443  57.835  26.684  -1.904  -2.291   1.817  HO1    PDX  28  
PDX  HO4    HB      H  0  1  N  Y  N  110.869  57.079  27.529   1.930   0.979   3.229  HO4    PDX  29  
PDX  HO6    H6      H  0  1  N  Y  N  111.886  62.629  28.708  -1.196   0.343   5.818  HO6    PDX  30  
PDX  H3S    H3S     H  0  1  N  N  N  117.855  56.924  30.759  -1.702   1.933  -3.244  H3S    PDX  31  
PDX  "HO'"  "HO'"   H  0  1  N  N  N  110.846  54.445  26.792   2.575  -1.748  -2.168  "HO'"  PDX  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PDX  C1   C2     SING  N  N   1  
PDX  C1   O1     SING  N  N   2  
PDX  C1   O5     SING  N  N   3  
PDX  C1   H1     SING  N  N   4  
PDX  C2   C3     SING  N  N   5  
PDX  C2   O2     SING  N  N   6  
PDX  C2   H2     SING  N  N   7  
PDX  C3   C4     SING  N  N   8  
PDX  C3   O3     SING  N  N   9  
PDX  C3   H3     SING  N  N  10  
PDX  C4   C5     SING  N  N  11  
PDX  C4   O4     SING  N  N  12  
PDX  C4   H4     SING  N  N  13  
PDX  C5   C6     SING  N  N  14  
PDX  C5   O5     SING  N  N  15  
PDX  C5   H5     SING  N  N  16  
PDX  C6   O6     SING  N  N  17  
PDX  C6   H61    SING  N  N  18  
PDX  C6   H62    SING  N  N  19  
PDX  O1   HO1    SING  N  N  20  
PDX  O2   S      SING  N  N  21  
PDX  O3   "S'"   SING  N  N  22  
PDX  O4   HO4    SING  N  N  23  
PDX  O6   HO6    SING  N  N  24  
PDX  O1S  S      DOUB  N  N  25  
PDX  O2S  S      DOUB  N  N  26  
PDX  O3S  S      SING  N  N  27  
PDX  O3S  H3S    SING  N  N  28  
PDX  O1X  "S'"   DOUB  N  N  29  
PDX  O2X  "S'"   DOUB  N  N  30  
PDX  O3X  "S'"   SING  N  N  31  
PDX  O3X  "HO'"  SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PDX  SMILES            ACDLabs               10.04  "O=S(=O)(O)OC1C(O)C(OC(O)C1OS(=O)(=O)O)CO"  
PDX  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@H](O)[C@H](O[S](O)(=O)=O)[C@@H](O[S](O)(=O)=O)[C@@H]1O"  
PDX  SMILES            CACTVS                3.341  "OC[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](O[S](O)(=O)=O)[CH]1O"  
PDX  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)OS(=O)(=O)O)OS(=O)(=O)O)O)O"  
PDX  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(O1)O)OS(=O)(=O)O)OS(=O)(=O)O)O)O"  
PDX  InChI             InChI                 1.03   "InChI=1S/C6H12O12S2/c7-1-2-3(8)4(17-19(10,11)12)5(6(9)16-2)18-20(13,14)15/h2-9H,1H2,(H,10,11,12)(H,13,14,15)/t2-,3-,4+,5-,6+/m1/s1"  
PDX  InChIKey          InChI                 1.03   ORUZACWROKWTRH-DVKNGEFBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PDX  "SYSTEMATIC NAME"                      ACDLabs               10.04  "2,3-di-O-sulfo-alpha-D-glucopyranose"  
PDX  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "[(2S,3R,4S,5R,6R)-2,5-dihydroxy-6-(hydroxymethyl)-4-sulfooxy-oxan-3-yl] hydrogen sulfate"  
PDX  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    "DGlcp[2S,3S]a"  
PDX  "COMMON NAME"                          GMML                  1.0    2-sulfo-3-sulfo-a-D-glucopyranose  
PDX  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-Glcp2SO33SO3  
#
_pdbx_chem_comp_related.comp_id            PDX
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  PDX  C1   GLC  C1   "Carbohydrate core"  
 2  PDX  C2   GLC  C2   "Carbohydrate core"  
 3  PDX  C3   GLC  C3   "Carbohydrate core"  
 4  PDX  C4   GLC  C4   "Carbohydrate core"  
 5  PDX  C5   GLC  C5   "Carbohydrate core"  
 6  PDX  C6   GLC  C6   "Carbohydrate core"  
 7  PDX  O1   GLC  O1   "Carbohydrate core"  
 8  PDX  O2   GLC  O2   "Carbohydrate core"  
 9  PDX  O3   GLC  O3   "Carbohydrate core"  
10  PDX  O4   GLC  O4   "Carbohydrate core"  
11  PDX  O5   GLC  O5   "Carbohydrate core"  
12  PDX  O6   GLC  O6   "Carbohydrate core"  
13  PDX  H1   GLC  H1   "Carbohydrate core"  
14  PDX  H2   GLC  H2   "Carbohydrate core"  
15  PDX  H3   GLC  H3   "Carbohydrate core"  
16  PDX  H4   GLC  H4   "Carbohydrate core"  
17  PDX  H5   GLC  H5   "Carbohydrate core"  
18  PDX  HO6  GLC  HO6  "Carbohydrate core"  
19  PDX  H61  GLC  H61  "Carbohydrate core"  
20  PDX  H62  GLC  H62  "Carbohydrate core"  
21  PDX  HO1  GLC  HO1  "Carbohydrate core"  
22  PDX  HO4  GLC  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
PDX  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
PDX  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
PDX  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
PDX  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PDX  "Create component"          2002-10-23  EBI   
PDX  "Modify descriptor"         2011-06-04  RCSB  
PDX  "Other modification"        2020-07-03  RCSB  
PDX  "Modify parent residue"     2020-07-17  RCSB  
PDX  "Modify name"               2020-07-17  RCSB  
PDX  "Modify synonyms"           2020-07-17  RCSB  
PDX  "Modify internal type"      2020-07-17  RCSB  
PDX  "Modify linking type"       2020-07-17  RCSB  
PDX  "Modify atom id"            2020-07-17  RCSB  
PDX  "Modify component atom id"  2020-07-17  RCSB  
PDX  "Modify leaving atom flag"  2020-07-17  RCSB  
##
