data_ORX
# 
_chem_comp.id                                    ORX 
_chem_comp.name                                  "N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-ORNITHINE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H22 N3 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-02-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        363.303 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ORX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1NJJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ORX OA   OA   O 0 1 N N N N N N 51.169 78.242 107.905 -2.882 0.408  -0.174 OA   ORX 1  
ORX CA   CA   C 0 1 N N N N N N 52.111 79.006 107.293 -2.836 -0.556 -1.106 CA   ORX 2  
ORX OXT  OXT  O 0 1 N N N N N N 52.990 78.419 106.425 -3.692 -1.408 -1.137 OXT  ORX 3  
ORX CAA  CAA  C 0 1 N N R N N N 52.176 80.533 107.587 -1.716 -0.576 -2.114 CAA  ORX 4  
ORX NA   NA   N 0 1 N N N N N N 52.254 81.385 106.274 -0.508 0.008  -1.516 NA   ORX 5  
ORX C4A  C4A  C 0 1 N N N N N N 53.533 81.155 105.465 0.227  -1.095 -0.886 C4A  ORX 6  
ORX C4   C4   C 0 1 Y N N N N N 53.430 81.659 103.972 1.485  -0.561 -0.250 C4   ORX 7  
ORX C5   C5   C 0 1 Y N N N N N 54.538 82.236 103.240 1.485  -0.126 1.064  C5   ORX 8  
ORX C6   C6   C 0 1 Y N N N N N 54.551 82.711 101.937 2.657  0.357  1.615  C6   ORX 9  
ORX N1   N1   N 0 1 Y N N N N N 53.412 82.640 101.181 3.768  0.407  0.907  N1   ORX 10 
ORX C2   C2   C 0 1 Y N N N N N 52.239 82.099 101.716 3.810  0.002  -0.347 C2   ORX 11 
ORX C3   C3   C 0 1 Y N N N N N 52.263 81.615 103.128 2.673  -0.489 -0.970 C3   ORX 12 
ORX O3   O3   O 0 1 N N N N N N 51.057 81.107 103.513 2.721  -0.905 -2.263 O3   ORX 13 
ORX C2A  C2A  C 0 1 N N N N N N 51.165 82.161 100.644 5.106  0.081  -1.112 C2A  ORX 14 
ORX C5A  C5A  C 0 1 N N N N N N 55.875 82.395 103.870 0.222  -0.178 1.885  C5A  ORX 15 
ORX OP4  OP4  O 0 1 N N N N N N 56.367 81.292 104.503 0.484  0.324  3.196  OP4  ORX 16 
ORX P    P    P 0 1 N N N N N N 57.825 81.291 105.089 -0.900 0.240  4.013  P    ORX 17 
ORX OP1  OP1  O 0 1 N N N N N N 58.122 80.053 105.754 -1.353 -1.167 4.071  OP1  ORX 18 
ORX OP2  OP2  O 0 1 N N N N N N 57.910 82.613 105.846 -0.675 0.793  5.508  OP2  ORX 19 
ORX OP3  OP3  O 0 1 N N N N N N 58.700 81.302 103.857 -2.015 1.133  3.272  OP3  ORX 20 
ORX CBA  CBA  C 0 1 N N N N N N 53.322 80.774 108.609 -2.122 0.238  -3.344 CBA  ORX 21 
ORX CGA  CGA  C 0 1 N N N N N N 52.951 80.590 110.076 -0.984 0.217  -4.368 CGA  ORX 22 
ORX CDA  CDA  C 0 1 N N N N N N 53.222 81.858 110.887 -1.390 1.032  -5.597 CDA  ORX 23 
ORX NE   NE   N 0 1 N N N N N N 52.887 81.615 112.306 -0.299 1.012  -6.580 NE   ORX 24 
ORX HOA  HOA  H 0 1 N N N N N N 50.558 78.649 108.507 -3.601 0.420  0.472  HOA  ORX 25 
ORX HAA  HAA  H 0 1 N N N N N N 51.229 80.891 108.055 -1.512 -1.605 -2.411 HAA  ORX 26 
ORX HNA  HNA  H 0 1 N N N N N N 52.132 82.376 106.480 -0.818 0.613  -0.770 HNA  ORX 27 
ORX H4A1 1H4A H 0 0 N N N N N N 54.412 81.611 105.976 0.489  -1.835 -1.642 H4A1 ORX 28 
ORX H4A2 2H4A H 0 0 N N N N N N 53.835 80.082 105.500 -0.396 -1.560 -0.123 H4A2 ORX 29 
ORX H6   H6   H 0 1 N N N N N N 55.467 83.145 101.502 2.663  0.698  2.640  H6   ORX 30 
ORX HO3  HO3  H 0 1 N N N N N N 50.287 81.078 102.956 2.509  -0.137 -2.812 HO3  ORX 31 
ORX H2A1 1H2A H 0 0 N N N N N N 50.229 81.729 101.070 5.661  -0.847 -0.983 H2A1 ORX 32 
ORX H2A2 2H2A H 0 0 N N N N N N 51.020 83.188 100.236 4.894  0.233  -2.171 H2A2 ORX 33 
ORX H2A3 3H2A H 0 0 N N N N N N 51.474 81.666 99.693  5.699  0.915  -0.737 H2A3 ORX 34 
ORX H5A1 1H5A H 0 0 N N N N N N 56.610 82.759 103.114 -0.545 0.432  1.409  H5A1 ORX 35 
ORX H5A2 2H5A H 0 0 N N N N N N 55.864 83.262 104.571 -0.124 -1.209 1.953  H5A2 ORX 36 
ORX HP2  HP2  H 0 1 N N N N N N 58.791 82.612 106.200 -1.527 0.725  5.962  HP2  ORX 37 
ORX HP3  HP3  H 0 1 N N N N N N 59.581 81.301 104.211 -1.681 2.040  3.255  HP3  ORX 38 
ORX HBA1 1HBA H 0 0 N N N N N N 54.198 80.132 108.355 -2.325 1.267  -3.048 HBA1 ORX 39 
ORX HBA2 2HBA H 0 0 N N N N N N 53.763 81.785 108.452 -3.018 -0.196 -3.788 HBA2 ORX 40 
ORX HGA1 1HGA H 0 0 N N N N N N 51.894 80.251 110.190 -0.781 -0.811 -4.664 HGA1 ORX 41 
ORX HGA2 2HGA H 0 0 N N N N N N 53.465 79.705 110.518 -0.088 0.651  -3.924 HGA2 ORX 42 
ORX HDA1 1HDA H 0 0 N N N N N N 54.266 82.226 110.757 -1.594 2.061  -5.301 HDA1 ORX 43 
ORX HDA2 2HDA H 0 0 N N N N N N 52.688 82.745 110.473 -2.286 0.598  -6.041 HDA2 ORX 44 
ORX HNE1 1HNE H 0 0 N N N N N N 53.067 82.460 112.846 -0.609 1.559  -7.369 HNE1 ORX 45 
ORX HNE2 2HNE H 0 0 N N N N N N 53.375 80.803 112.684 0.472  1.513  -6.166 HNE2 ORX 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ORX OA  CA   SING N N 1  
ORX OA  HOA  SING N N 2  
ORX CA  OXT  DOUB N N 3  
ORX CA  CAA  SING N N 4  
ORX CAA NA   SING N N 5  
ORX CAA CBA  SING N N 6  
ORX CAA HAA  SING N N 7  
ORX NA  C4A  SING N N 8  
ORX NA  HNA  SING N N 9  
ORX C4A C4   SING N N 10 
ORX C4A H4A1 SING N N 11 
ORX C4A H4A2 SING N N 12 
ORX C4  C5   DOUB Y N 13 
ORX C4  C3   SING Y N 14 
ORX C5  C6   SING Y N 15 
ORX C5  C5A  SING N N 16 
ORX C6  N1   DOUB Y N 17 
ORX C6  H6   SING N N 18 
ORX N1  C2   SING Y N 19 
ORX C2  C3   DOUB Y N 20 
ORX C2  C2A  SING N N 21 
ORX C3  O3   SING N N 22 
ORX O3  HO3  SING N N 23 
ORX C2A H2A1 SING N N 24 
ORX C2A H2A2 SING N N 25 
ORX C2A H2A3 SING N N 26 
ORX C5A OP4  SING N N 27 
ORX C5A H5A1 SING N N 28 
ORX C5A H5A2 SING N N 29 
ORX OP4 P    SING N N 30 
ORX P   OP1  DOUB N N 31 
ORX P   OP2  SING N N 32 
ORX P   OP3  SING N N 33 
ORX OP2 HP2  SING N N 34 
ORX OP3 HP3  SING N N 35 
ORX CBA CGA  SING N N 36 
ORX CBA HBA1 SING N N 37 
ORX CBA HBA2 SING N N 38 
ORX CGA CDA  SING N N 39 
ORX CGA HGA1 SING N N 40 
ORX CGA HGA2 SING N N 41 
ORX CDA NE   SING N N 42 
ORX CDA HDA1 SING N N 43 
ORX CDA HDA2 SING N N 44 
ORX NE  HNE1 SING N N 45 
ORX NE  HNE2 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ORX SMILES           ACDLabs              10.04 "O=C(O)C(NCc1c(cnc(c1O)C)COP(=O)(O)O)CCCN"                                                                                                               
ORX SMILES_CANONICAL CACTVS               3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@H](CCCN)C(O)=O)c1O"                                                                                                         
ORX SMILES           CACTVS               3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN[CH](CCCN)C(O)=O)c1O"                                                                                                          
ORX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@H](CCCN)C(=O)O)O"                                                                                                         
ORX SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CCCN)C(=O)O)O"                                                                                                             
ORX InChI            InChI                1.03  "InChI=1S/C13H22N3O7P/c1-8-12(17)10(6-16-11(13(18)19)3-2-4-14)9(5-15-8)7-23-24(20,21)22/h5,11,16-17H,2-4,6-7,14H2,1H3,(H,18,19)(H2,20,21,22)/t11-/m1/s1" 
ORX InChIKey         InChI                1.03  OIRLUPUXIUAWOH-LLVKDONJSA-N                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ORX "SYSTEMATIC NAME" ACDLabs              10.04 "N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-D-ornithine"                
ORX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-5-amino-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ORX "Create component"  2003-02-10 RCSB 
ORX "Modify descriptor" 2011-06-04 RCSB 
ORX "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ORX 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4A 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
