data_MMX
#

_chem_comp.id                                   MMX
_chem_comp.name                                 "3-ethyl-3,4,5,6-tetrahydrocytidine 5'-(dihydrogen phosphate)"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C11 H22 N3 O8 P"
_chem_comp.mon_nstd_parent_comp_id              C
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-03-17
_chem_comp.pdbx_modified_date                   2022-05-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       355.281
_chem_comp.one_letter_code                      C
_chem_comp.three_letter_code                    MMX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7UCJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MMX  "C1'"  C1   C  0  1  N  N  R  364.559  225.930  386.296   0.956  -1.416  -0.673  "C1'"  MMX   1  
MMX  C2     C2   C  0  1  N  N  N  365.134  228.478  386.637   2.063   0.557   0.195  C2     MMX   2  
MMX  "C2'"  C3   C  0  1  N  N  R  363.084  225.681  386.612   0.828  -2.163   0.679  "C2'"  MMX   3  
MMX  "C3'"  C4   C  0  1  N  N  S  362.413  226.430  385.471  -0.672  -2.547   0.696  "C3'"  MMX   4  
MMX  C4     C5   C  0  1  N  N  S  366.107  229.116  388.883   4.264   1.317  -0.553  C4     MMX   5  
MMX  "C4'"  C6   C  0  1  N  N  R  363.336  226.097  384.313  -1.324  -1.568  -0.298  "C4'"  MMX   6  
MMX  C5     C7   C  0  1  N  N  N  366.524  227.699  388.994   4.498  -0.161  -0.883  C5     MMX   7  
MMX  "C5'"  C8   C  0  1  N  N  N  363.251  226.946  383.066  -2.409  -0.753   0.410  "C5'"  MMX   8  
MMX  C6     C9   C  0  1  N  N  N  365.548  226.742  388.427   3.229  -0.722  -1.534  C6     MMX   9  
MMX  N1     N1   N  0  1  N  N  N  365.084  227.063  387.095   2.089  -0.488  -0.645  N1     MMX  10  
MMX  N3     N2   N  0  1  N  N  N  365.668  229.567  387.481   3.069   1.440   0.283  N3     MMX  11  
MMX  N4     N3   N  0  1  N  N  N  367.128  229.980  389.459   4.073   2.074  -1.798  N4     MMX  12  
MMX  O2     O1   O  0  1  N  N  N  364.754  228.762  385.554   1.085   0.714   0.901  O2     MMX  13  
MMX  "O2'"  O2   O  0  1  N  N  N  362.834  224.287  386.511   1.654  -3.328   0.697  "O2'"  MMX  14  
MMX  "O3'"  O3   O  0  1  N  N  N  361.059  226.061  385.271  -0.847  -3.897   0.261  "O3'"  MMX  15  
MMX  "O4'"  O4   O  0  1  N  N  N  364.653  226.211  384.911  -0.290  -0.693  -0.778  "O4'"  MMX  16  
MMX  "O5'"  O5   O  0  1  N  N  N  362.540  228.156  383.266  -3.075   0.080  -0.541  "O5'"  MMX  17  
MMX  OP1    O6   O  0  1  N  N  N  360.921  228.094  381.351  -5.344   0.313   0.542  OP1    MMX  18  
MMX  OP2    O7   O  0  1  N  N  N  361.593  230.353  382.467  -3.720   2.223   0.840  OP2    MMX  19  
MMX  P      P1   P  0  1  N  N  N  361.963  228.962  382.016  -4.277   1.076  -0.144  P      MMX  20  
MMX  C31    C10  C  0  1  N  N  N  365.688  230.949  387.019   2.969   2.549   1.235  C31    MMX  21  
MMX  C32    C11  C  0  1  N  N  N  367.082  231.537  386.815   3.560   2.121   2.580  C32    MMX  22  
MMX  OP3    O8   O  0  1  N  Y  N  363.211  229.069  381.008  -4.873   1.755  -1.476  OP3    MMX  23  
MMX  H1     H1   H  0  1  N  N  N  365.129  225.021  386.538   1.061  -2.124  -1.495  H1     MMX  24  
MMX  H2     H2   H  0  1  N  N  N  362.806  226.101  387.590   1.070  -1.503   1.512  H2     MMX  25  
MMX  H3     H3   H  0  1  N  N  N  362.481  227.509  385.674  -1.089  -2.412   1.694  H3     MMX  26  
MMX  H4     H4   H  0  1  N  N  N  365.216  229.222  389.519   5.127   1.711  -0.016  H4     MMX  27  
MMX  H5     H5   H  0  1  N  N  N  363.162  225.049  384.028  -1.758  -2.120  -1.132  H5     MMX  28  
MMX  H6     H6   H  0  1  N  N  N  366.664  227.461  390.059   5.335  -0.254  -1.574  H6     MMX  29  
MMX  H7     H7   H  0  1  N  N  N  367.479  227.576  388.462   4.716  -0.710   0.033  H7     MMX  30  
MMX  H8     H8   H  0  1  N  N  N  362.742  226.366  382.282  -3.130  -1.429   0.869  H8     MMX  31  
MMX  H9     H9   H  0  1  N  N  N  364.272  227.190  382.738  -1.951  -0.132   1.180  H9     MMX  32  
MMX  H10    H10  H  0  1  N  N  N  364.674  226.709  389.095   3.056  -0.221  -2.487  H10    MMX  33  
MMX  H11    H11  H  0  1  N  N  N  366.022  225.750  388.394   3.348  -1.792  -1.702  H11    MMX  34  
MMX  H12    H12  H  0  1  N  N  N  367.377  229.643  390.367   3.917   3.052  -1.606  H12    MMX  35  
MMX  H13    H13  H  0  1  N  N  N  367.936  229.979  388.870   4.856   1.948  -2.421  H13    MMX  36  
MMX  H15    H15  H  0  1  N  N  N  363.260  223.836  387.230   1.609  -3.830   1.523  H15    MMX  37  
MMX  H16    H16  H  0  1  N  N  N  360.549  226.301  386.035  -0.406  -4.551   0.821  H16    MMX  38  
MMX  H17    H17  H  0  1  N  N  N  360.681  230.521  382.260  -3.016   2.763   0.456  H17    MMX  39  
MMX  H18    H18  H  0  1  N  N  N  365.162  231.566  387.763   3.522   3.407   0.852  H18    MMX  40  
MMX  H19    H19  H  0  1  N  N  N  365.153  230.996  386.059   1.922   2.821   1.367  H19    MMX  41  
MMX  H20    H20  H  0  1  N  N  N  366.995  232.577  386.468   3.007   1.263   2.963  H20    MMX  42  
MMX  H21    H21  H  0  1  N  N  N  367.633  231.513  387.767   4.607   1.849   2.447  H21    MMX  43  
MMX  H22    H22  H  0  1  N  N  N  367.624  230.944  386.063   3.486   2.947   3.288  H22    MMX  44  
MMX  H23    H23  H  0  1  N  N  N  363.027  228.570  380.221  -5.602   2.369  -1.311  H23    MMX  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MMX  OP1    P      DOUB  N  N   1  
MMX  P      OP2    SING  N  N   2  
MMX  P      "O5'"  SING  N  N   3  
MMX  "C5'"  "O5'"  SING  N  N   4  
MMX  "C5'"  "C4'"  SING  N  N   5  
MMX  "C4'"  "O4'"  SING  N  N   6  
MMX  "C4'"  "C3'"  SING  N  N   7  
MMX  "O4'"  "C1'"  SING  N  N   8  
MMX  "O3'"  "C3'"  SING  N  N   9  
MMX  "C3'"  "C2'"  SING  N  N  10  
MMX  O2     C2     DOUB  N  N  11  
MMX  "C1'"  "C2'"  SING  N  N  12  
MMX  "C1'"  N1     SING  N  N  13  
MMX  "O2'"  "C2'"  SING  N  N  14  
MMX  C2     N1     SING  N  N  15  
MMX  C2     N3     SING  N  N  16  
MMX  C32    C31    SING  N  N  17  
MMX  C31    N3     SING  N  N  18  
MMX  N1     C6     SING  N  N  19  
MMX  N3     C4     SING  N  N  20  
MMX  C6     C5     SING  N  N  21  
MMX  C4     C5     SING  N  N  22  
MMX  C4     N4     SING  N  N  23  
MMX  P      OP3    SING  N  N  24  
MMX  "C1'"  H1     SING  N  N  25  
MMX  "C2'"  H2     SING  N  N  26  
MMX  "C3'"  H3     SING  N  N  27  
MMX  C4     H4     SING  N  N  28  
MMX  "C4'"  H5     SING  N  N  29  
MMX  C5     H6     SING  N  N  30  
MMX  C5     H7     SING  N  N  31  
MMX  "C5'"  H8     SING  N  N  32  
MMX  "C5'"  H9     SING  N  N  33  
MMX  C6     H10    SING  N  N  34  
MMX  C6     H11    SING  N  N  35  
MMX  N4     H12    SING  N  N  36  
MMX  N4     H13    SING  N  N  37  
MMX  "O2'"  H15    SING  N  N  38  
MMX  "O3'"  H16    SING  N  N  39  
MMX  OP2    H17    SING  N  N  40  
MMX  C31    H18    SING  N  N  41  
MMX  C31    H19    SING  N  N  42  
MMX  C32    H20    SING  N  N  43  
MMX  C32    H21    SING  N  N  44  
MMX  C32    H22    SING  N  N  45  
MMX  OP3    H23    SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MMX  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC1OC(N2CCC(N)N(CC)C2=O)C(O)C1O"  
MMX  InChI             InChI                 1.03   "InChI=1S/C11H22N3O8P/c1-2-13-7(12)3-4-14(11(13)17)10-9(16)8(15)6(22-10)5-21-23(18,19)20/h6-10,15-16H,2-5,12H2,1H3,(H2,18,19,20)/t6-,7+,8-,9-,10-/m1/s1"  
MMX  InChIKey          InChI                 1.03   YFXIRUNUMADJET-JDDHQFAOSA-N  
MMX  SMILES_CANONICAL  CACTVS                3.385  "CCN1[C@H](N)CCN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C1=O"  
MMX  SMILES            CACTVS                3.385  "CCN1[CH](N)CCN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C1=O"  
MMX  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCN1[C@@H](CCN(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N"  
MMX  SMILES            "OpenEye OEToolkits"  2.0.7  "CCN1C(CCN(C1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MMX  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-ethyl-3,4,5,6-tetrahydrocytidine 5'-(dihydrogen phosphate)"  
MMX  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{S},4~{R},5~{R})-5-[(4~{S})-4-azanyl-3-ethyl-2-oxidanylidene-1,3-diazinan-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MMX  "Create component"  2022-03-17  RCSB  
MMX  "Initial release"   2022-06-01  RCSB  
##
