data_L2X
# 
_chem_comp.id                                    L2X 
_chem_comp.name                                  "(2S,3S)-N3-[2-(4-hydroxyphenyl)ethyl]-N2-[(2S)-1-oxidanylidene-3-phenyl-1-[(phenylmethyl)amino]propan-2-yl]oxirane-2,3-dicarboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H29 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2S,3S)-2-N-[(1S)-1-(benzylcarbamoyl)-2-phenylethyl]-3-N-[2-(4-hydroxyphenyl)ethyl]oxirane-2,3-dicarboxamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-14 
_chem_comp.pdbx_modified_date                    2023-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        487.547 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L2X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A4U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L2X N1  N1  N 0 1 N N N 15.795 -22.437 0.804  -1.124 -0.827 -0.393 N1  L2X 1  
L2X C4  C1  C 0 1 Y N N 20.119 -23.395 0.483  -1.586 -3.034 1.776  C4  L2X 2  
L2X C5  C2  C 0 1 Y N N 21.308 -24.106 0.419  -1.449 -4.404 1.895  C5  L2X 3  
L2X C6  C3  C 0 1 N N N 18.110 -22.545 1.730  -2.940 -0.999 1.237  C6  L2X 4  
L2X C7  C4  C 0 1 N N S 16.993 -23.252 0.941  -2.549 -0.562 -0.176 C7  L2X 5  
L2X C8  C5  C 0 1 N N N 16.689 -24.616 1.570  -2.816 0.912  -0.339 C8  L2X 6  
L2X C10 C6  C 0 1 Y N N 15.885 -27.872 0.043  -5.792 3.097  -0.120 C10 L2X 7  
L2X C13 C7  C 0 1 Y N N 15.010 -29.233 -2.227 -8.480 3.596  0.288  C13 L2X 8  
L2X C15 C8  C 0 1 Y N N 14.611 -27.663 -0.469 -6.256 3.388  1.149  C15 L2X 9  
L2X C17 C9  C 0 1 N N S 13.748 -21.742 -0.399 0.746  -2.317 -1.024 C17 L2X 10 
L2X C20 C10 C 0 1 N N N 11.234 -17.570 0.615  4.644  0.048  -0.770 C20 L2X 11 
L2X C21 C11 C 0 1 N N N 12.325 -16.667 1.157  4.757  1.041  0.389  C21 L2X 12 
L2X C22 C12 C 0 1 Y N N 12.529 -16.839 2.644  6.203  1.412  0.593  C22 L2X 13 
L2X C24 C13 C 0 1 Y N N 12.015 -16.201 4.922  8.318  1.007  1.640  C24 L2X 14 
L2X C26 C14 C 0 1 Y N N 13.599 -17.952 4.502  8.065  2.836  0.105  C26 L2X 15 
L2X N   N2  N 0 1 N N N 16.716 -25.671 0.749  -4.067 1.391  -0.184 N   L2X 16 
L2X C   C15 C 0 1 Y N N 21.803 -24.741 1.541  -2.515 -5.234 1.599  C   L2X 17 
L2X O   O1  O 0 1 N N N 16.457 -24.704 2.770  -1.906 1.667  -0.609 O   L2X 18 
L2X C1  C16 C 0 1 Y N N 21.116 -24.645 2.733  -3.717 -4.693 1.184  C1  L2X 19 
L2X C11 C17 C 0 1 Y N N 16.701 -28.794 -0.587 -6.671 3.061  -1.186 C11 L2X 20 
L2X C12 C18 C 0 1 Y N N 16.265 -29.467 -1.717 -8.015 3.311  -0.982 C12 L2X 21 
L2X C14 C19 C 0 1 Y N N 14.181 -28.337 -1.601 -7.601 3.637  1.353  C14 L2X 22 
L2X C16 C20 C 0 1 N N N 14.995 -22.592 -0.260 -0.720 -2.045 -0.802 C16 L2X 23 
L2X C18 C21 C 0 1 N N S 13.443 -20.583 0.465  1.451  -1.553 -2.146 C18 L2X 24 
L2X C19 C22 C 0 1 N N N 12.701 -19.387 -0.125 2.897  -1.181 -1.942 C19 L2X 25 
L2X C2  C23 C 0 1 Y N N 19.936 -23.919 2.804  -3.854 -3.322 1.065  C2  L2X 26 
L2X C23 C24 C 0 1 Y N N 11.838 -16.048 3.557  6.992  0.668  1.451  C23 L2X 27 
L2X C25 C25 C 0 1 Y N N 12.902 -17.153 5.399  8.857  2.095  0.969  C25 L2X 28 
L2X C27 C26 C 0 1 Y N N 13.411 -17.791 3.139  6.740  2.493  -0.081 C27 L2X 29 
L2X C3  C27 C 0 1 Y N N 19.418 -23.297 1.673  -2.789 -2.493 1.361  C3  L2X 30 
L2X C9  C28 C 0 1 N N N 16.402 -27.027 1.181  -4.326 2.824  -0.342 C9  L2X 31 
L2X N2  N3  N 0 1 N N N 11.654 -18.962 0.594  3.239  -0.313 -0.969 N2  L2X 32 
L2X O1  O2  O 0 1 N N N 15.218 -23.397 -1.151 -1.535 -2.923 -0.992 O1  L2X 33 
L2X O2  O3  O 0 1 N N N 12.733 -21.823 0.614  1.128  -2.941 -2.252 O2  L2X 34 
L2X O3  O4  O 0 1 N N N 13.047 -18.891 -1.213 3.753  -1.663 -2.653 O3  L2X 35 
L2X O4  O5  O 0 1 N N N 13.115 -17.286 6.741  10.160 2.434  1.158  O4  L2X 36 
L2X H18 H1  H 0 1 N N N 15.568 -21.760 1.505  -0.473 -0.123 -0.245 H18 L2X 37 
L2X H6  H2  H 0 1 N N N 19.736 -22.913 -0.404 -0.755 -2.385 2.011  H6  L2X 38 
L2X H7  H3  H 0 1 N N N 21.850 -24.163 -0.513 -0.510 -4.827 2.219  H7  L2X 39 
L2X H9  H4  H 0 1 N N N 18.261 -21.541 1.307  -2.292 -0.506 1.962  H9  L2X 40 
L2X H8  H5  H 0 1 N N N 17.799 -22.457 2.781  -3.977 -0.721 1.429  H8  L2X 41 
L2X H   H6  H 0 1 N N N 17.387 -23.445 -0.068 -3.137 -1.120 -0.905 H   L2X 42 
L2X H15 H7  H 0 1 N N N 14.679 -29.751 -3.115 -9.531 3.792  0.447  H15 L2X 43 
L2X H17 H8  H 0 1 N N N 13.947 -26.966 0.021  -5.569 3.420  1.981  H17 L2X 44 
L2X H1  H9  H 0 1 N N N 13.379 -21.655 -1.431 1.323  -2.556 -0.131 H1  L2X 45 
L2X H20 H10 H 0 1 N N N 10.987 -17.256 -0.410 5.034  0.505  -1.679 H20 L2X 46 
L2X H21 H11 H 0 1 N N N 10.343 -17.475 1.253  5.220  -0.848 -0.538 H21 L2X 47 
L2X H22 H12 H 0 1 N N N 13.268 -16.903 0.641  4.181  1.936  0.157  H22 L2X 48 
L2X H23 H13 H 0 1 N N N 12.050 -15.621 0.957  4.367  0.583  1.298  H23 L2X 49 
L2X H25 H14 H 0 1 N N N 11.463 -15.580 5.613  8.933  0.428  2.314  H25 L2X 50 
L2X H26 H15 H 0 1 N N N 14.288 -18.699 4.867  8.483  3.683  -0.419 H26 L2X 51 
L2X H10 H16 H 0 1 N N N 16.964 -25.522 -0.208 -4.794 0.787  0.031  H10 L2X 52 
L2X H3  H17 H 0 1 N N N 22.720 -25.308 1.485  -2.408 -6.304 1.692  H3  L2X 53 
L2X H4  H18 H 0 1 N N N 21.498 -25.137 3.615  -4.550 -5.341 0.953  H4  L2X 54 
L2X H13 H19 H 0 1 N N N 17.688 -28.991 -0.194 -6.308 2.838  -2.178 H13 L2X 55 
L2X H14 H20 H 0 1 N N N 16.916 -30.180 -2.201 -8.703 3.279  -1.815 H14 L2X 56 
L2X H16 H21 H 0 1 N N N 13.190 -28.156 -1.991 -7.964 3.860  2.345  H16 L2X 57 
L2X H2  H22 H 0 1 N N N 14.191 -20.340 1.234  0.859  -0.848 -2.730 H2  L2X 58 
L2X H5  H23 H 0 1 N N N 19.415 -23.836 3.746  -4.794 -2.900 0.741  H5  L2X 59 
L2X H24 H24 H 0 1 N N N 11.150 -15.299 3.194  6.572  -0.179 1.973  H24 L2X 60 
L2X H27 H25 H 0 1 N N N 13.959 -18.416 2.450  6.122  3.070  -0.754 H27 L2X 61 
L2X H11 H26 H 0 1 N N N 15.635 -26.981 1.968  -4.048 3.135  -1.349 H11 L2X 62 
L2X H12 H27 H 0 1 N N N 17.313 -27.492 1.584  -3.739 3.383  0.386  H12 L2X 63 
L2X H19 H28 H 0 1 N N N 11.142 -19.627 1.137  2.554  0.072  -0.400 H19 L2X 64 
L2X H28 H29 H 0 1 N N N 12.565 -16.671 7.212  10.771 2.003  0.545  H28 L2X 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L2X C13 C12 DOUB Y N 1  
L2X C13 C14 SING Y N 2  
L2X C12 C11 SING Y N 3  
L2X C14 C15 DOUB Y N 4  
L2X O3  C19 DOUB N N 5  
L2X O1  C16 DOUB N N 6  
L2X C11 C10 DOUB Y N 7  
L2X C15 C10 SING Y N 8  
L2X C17 C16 SING N N 9  
L2X C17 C18 SING N N 10 
L2X C17 O2  SING N N 11 
L2X C16 N1  SING N N 12 
L2X C19 C18 SING N N 13 
L2X C19 N2  SING N N 14 
L2X C10 C9  SING N N 15 
L2X C5  C4  DOUB Y N 16 
L2X C5  C   SING Y N 17 
L2X C18 O2  SING N N 18 
L2X C4  C3  SING Y N 19 
L2X N2  C20 SING N N 20 
L2X C20 C21 SING N N 21 
L2X N   C9  SING N N 22 
L2X N   C8  SING N N 23 
L2X N1  C7  SING N N 24 
L2X C7  C8  SING N N 25 
L2X C7  C6  SING N N 26 
L2X C21 C22 SING N N 27 
L2X C   C1  DOUB Y N 28 
L2X C8  O   DOUB N N 29 
L2X C3  C6  SING N N 30 
L2X C3  C2  DOUB Y N 31 
L2X C22 C27 DOUB Y N 32 
L2X C22 C23 SING Y N 33 
L2X C1  C2  SING Y N 34 
L2X C27 C26 SING Y N 35 
L2X C23 C24 DOUB Y N 36 
L2X C26 C25 DOUB Y N 37 
L2X C24 C25 SING Y N 38 
L2X C25 O4  SING N N 39 
L2X N1  H18 SING N N 40 
L2X C4  H6  SING N N 41 
L2X C5  H7  SING N N 42 
L2X C6  H9  SING N N 43 
L2X C6  H8  SING N N 44 
L2X C7  H   SING N N 45 
L2X C13 H15 SING N N 46 
L2X C15 H17 SING N N 47 
L2X C17 H1  SING N N 48 
L2X C20 H20 SING N N 49 
L2X C20 H21 SING N N 50 
L2X C21 H22 SING N N 51 
L2X C21 H23 SING N N 52 
L2X C24 H25 SING N N 53 
L2X C26 H26 SING N N 54 
L2X N   H10 SING N N 55 
L2X C   H3  SING N N 56 
L2X C1  H4  SING N N 57 
L2X C11 H13 SING N N 58 
L2X C12 H14 SING N N 59 
L2X C14 H16 SING N N 60 
L2X C18 H2  SING N N 61 
L2X C2  H5  SING N N 62 
L2X C23 H24 SING N N 63 
L2X C27 H27 SING N N 64 
L2X C9  H11 SING N N 65 
L2X C9  H12 SING N N 66 
L2X N2  H19 SING N N 67 
L2X O4  H28 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L2X InChI            InChI                1.06  "InChI=1S/C28H29N3O5/c32-22-13-11-19(12-14-22)15-16-29-27(34)24-25(36-24)28(35)31-23(17-20-7-3-1-4-8-20)26(33)30-18-21-9-5-2-6-10-21/h1-14,23-25,32H,15-18H2,(H,29,34)(H,30,33)(H,31,35)/t23-,24-,25-/m0/s1" 
L2X InChIKey         InChI                1.06  ZMZQYVMNDRBKLO-SDHOMARFSA-N                                                                                                                                                                                  
L2X SMILES_CANONICAL CACTVS               3.385 "Oc1ccc(CCNC(=O)[C@H]2O[C@@H]2C(=O)N[C@@H](Cc3ccccc3)C(=O)NCc4ccccc4)cc1"                                                                                                                                    
L2X SMILES           CACTVS               3.385 "Oc1ccc(CCNC(=O)[CH]2O[CH]2C(=O)N[CH](Cc3ccccc3)C(=O)NCc4ccccc4)cc1"                                                                                                                                         
L2X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](C(=O)NCc2ccccc2)NC(=O)[C@@H]3[C@H](O3)C(=O)NCCc4ccc(cc4)O"                                                                                                                                
L2X SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(=O)NCc2ccccc2)NC(=O)C3C(O3)C(=O)NCCc4ccc(cc4)O"                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           L2X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S})-~{N}3-[2-(4-hydroxyphenyl)ethyl]-~{N}2-[(2~{S})-1-oxidanylidene-3-phenyl-1-[(phenylmethyl)amino]propan-2-yl]oxirane-2,3-dicarboxamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      L2X 
_pdbx_chem_comp_synonyms.name         "(2S,3S)-2-N-[(1S)-1-(benzylcarbamoyl)-2-phenylethyl]-3-N-[2-(4-hydroxyphenyl)ethyl]oxirane-2,3-dicarboxamide" 
_pdbx_chem_comp_synonyms.provenance   PUBCHEM 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L2X "Create component"  2022-06-14 PDBE 
L2X "Modify name"       2022-06-14 PDBE 
L2X "Modify descriptor" 2022-08-22 RCSB 
L2X "Initial release"   2023-07-05 RCSB 
# 
