data_KAX
# 
_chem_comp.id                                    KAX 
_chem_comp.name                                  "9-[(1~{R},6~{R},8~{R},10~{S},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-18-fluoranyl-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]purin-6-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H25 F N10 O9 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-23 
_chem_comp.pdbx_modified_date                    2023-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        642.431 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KAX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZXB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KAX C12  C1  C 0 1 Y N N N N N 41.386 34.635 -0.671 9.139  0.409  -0.005 C12  KAX 1  
KAX C14  C2  C 0 1 Y N N N N N 39.296 34.509 -1.412 6.913  0.002  -0.408 C14  KAX 2  
KAX C15  C3  C 0 1 Y N N N N N 39.273 35.850 -1.746 7.250  -0.534 -1.663 C15  KAX 3  
KAX C16  C4  C 0 1 Y N N N N N 40.448 36.569 -1.485 8.607  -0.569 -2.027 C16  KAX 4  
KAX C18  C5  C 0 1 Y N N N N N 37.367 35.083 -2.264 5.094  -0.653 -1.467 C18  KAX 5  
KAX C2   C6  C 0 1 Y N N N N N 34.603 41.457 0.319  -8.887 -1.174 -0.977 C2   KAX 6  
KAX C21  C7  C 0 1 N N R N N N 32.639 37.682 1.342  -5.118 -0.387 1.329  C21  KAX 7  
KAX C22  C8  C 0 1 N N N N N N 32.427 37.278 -0.119 -4.287 -1.619 0.937  C22  KAX 8  
KAX C23  C9  C 0 1 N N S N N N 32.774 35.801 -0.100 -2.836 -1.109 0.921  C23  KAX 9  
KAX C24  C10 C 0 1 N N R N N N 32.179 35.385 1.235  -2.871 0.223  1.683  C24  KAX 10 
KAX C25  C11 C 0 1 N N N N N N 32.756 34.115 1.819  -2.232 1.324  0.832  C25  KAX 11 
KAX C31  C12 C 0 1 N N R N N N 37.585 32.638 -1.588 4.728  0.345  0.822  C31  KAX 12 
KAX C32  C13 C 0 1 N N S N N N 37.235 32.294 -0.148 3.716  1.395  0.355  C32  KAX 13 
KAX C33  C14 C 0 1 N N R N N N 35.805 32.778 -0.092 2.313  0.818  0.567  C33  KAX 14 
KAX C34  C15 C 0 1 N N R N N N 35.198 32.126 -1.329 2.460  -0.502 1.329  C34  KAX 15 
KAX C35  C16 C 0 1 N N N N N N 33.869 32.701 -1.767 1.698  -1.609 0.600  C35  KAX 16 
KAX C36  C17 C 0 1 N N N N N N 36.304 32.316 -2.385 3.951  -0.848 1.385  C36  KAX 17 
KAX C4   C18 C 0 1 Y N N N N N 34.464 39.426 1.207  -6.896 -0.150 -0.456 C4   KAX 18 
KAX C5   C19 C 0 1 Y N N N N N 35.771 39.470 1.654  -7.055 0.698  -1.564 C5   KAX 19 
KAX C6   C20 C 0 1 Y N N N N N 36.480 40.644 1.365  -8.202 0.542  -2.361 C6   KAX 20 
KAX C8   C21 C 0 1 Y N N N N N 35.007 37.584 2.250  -5.191 1.240  -0.599 C8   KAX 21 
KAX F32  F1  F 0 1 N N N N N N 37.257 30.905 0.001  3.866  2.565  1.107  F32  KAX 22 
KAX N1   N1  N 0 1 Y N N N N N 35.875 41.642 0.688  -9.080 -0.399 -2.029 N1   KAX 23 
KAX N11  N2  N 0 1 Y N N N N N 41.510 35.939 -0.940 9.504  -0.090 -1.172 N11  KAX 24 
KAX N13  N3  N 0 1 Y N N N N N 40.327 33.840 -0.871 7.881  0.458  0.380  N13  KAX 25 
KAX N16  N4  N 0 1 N N N N N N 40.537 37.874 -1.766 8.999  -1.085 -3.250 N16  KAX 26 
KAX N17  N5  N 0 1 Y N N N N N 38.048 36.207 -2.285 6.094  -0.918 -2.256 N17  KAX 27 
KAX N19  N6  N 0 1 Y N N N N N 38.065 34.017 -1.759 5.548  -0.091 -0.312 N19  KAX 28 
KAX N3   N7  N 0 1 Y N N N N N 33.820 40.391 0.531  -7.828 -1.064 -0.203 N3   KAX 29 
KAX N6   N8  N 0 1 N N N N N N 37.752 40.796 1.749  -8.413 1.348  -3.466 N6   KAX 30 
KAX N7   N9  N 0 1 Y N N N N N 36.108 38.300 2.314  -5.980 1.522  -1.594 N7   KAX 31 
KAX N9   N10 N 0 1 Y N N N N N 33.971 38.213 1.607  -5.712 0.215  0.133  N9   KAX 32 
KAX O23  O1  O 0 1 N N N N N N 32.093 35.149 -1.185 -1.975 -2.038 1.583  O23  KAX 33 
KAX O24  O2  O 0 1 N N N N N N 32.469 36.500 2.110  -4.233 0.543  1.951  O24  KAX 34 
KAX O25  O3  O 0 1 N N N N N N 34.156 34.310 2.107  -1.096 1.854  1.517  O25  KAX 35 
KAX O33  O4  O 0 1 N N N N N N 35.176 32.240 1.082  1.524  1.732  1.329  O33  KAX 36 
KAX O35  O5  O 0 1 N N N N N N 34.038 34.017 -2.333 0.650  -2.099 1.439  O35  KAX 37 
KAX P25  P1  P 0 1 N N N N N N 35.104 33.077 2.430  0.196  2.437  0.753  P25  KAX 38 
KAX P35  P2  P 0 1 N N N N N N 32.794 34.969 -2.599 -0.713 -2.731 0.861  P35  KAX 39 
KAX O25A O6  O 0 0 N N N N N N 34.481 32.236 3.505  0.287  4.027  0.988  O25A KAX 40 
KAX O25B O7  O 0 0 N N N N N N 36.474 33.579 2.778  0.079  2.158  -0.696 O25B KAX 41 
KAX O35A O8  O 0 0 N N N N N N 31.844 34.297 -3.548 -0.733 -4.187 1.125  O35A KAX 42 
KAX O35B O9  O 0 0 N N N N N N 33.286 36.301 -3.083 -0.795 -2.473 -0.726 O35B KAX 43 
KAX H1   H1  H 0 1 N N N N N N 42.253 34.161 -0.236 9.901  0.788  0.660  H1   KAX 44 
KAX H2   H2  H 0 1 N N N N N N 36.348 35.006 -2.614 4.056  -0.850 -1.694 H2   KAX 45 
KAX H3   H3  H 0 1 N N N N N N 34.147 42.274 -0.221 -9.628 -1.923 -0.740 H3   KAX 46 
KAX H4   H4  H 0 1 N N N N N N 31.879 38.429 1.617  -5.903 -0.675 2.028  H4   KAX 47 
KAX H5   H5  H 0 1 N N N N N N 33.098 37.836 -0.788 -4.405 -2.410 1.678  H5   KAX 48 
KAX H6   H6  H 0 1 N N N N N N 31.384 37.438 -0.429 -4.577 -1.975 -0.052 H6   KAX 49 
KAX H7   H7  H 0 1 N N N N N N 33.862 35.642 -0.123 -2.502 -0.950 -0.105 H7   KAX 50 
KAX H8   H8  H 0 1 N N N N N N 31.091 35.268 1.122  -2.322 0.124  2.621  H8   KAX 51 
KAX H9   H9  H 0 1 N N N N N N 32.222 33.863 2.747  -1.918 0.907  -0.125 H9   KAX 52 
KAX H10  H10 H 0 1 N N N N N N 32.641 33.294 1.096  -2.958 2.119  0.662  H10  KAX 53 
KAX H11  H11 H 0 1 N N N N N N 38.372 31.946 -1.922 5.366  0.768  1.597  H11  KAX 54 
KAX H12  H12 H 0 1 N N N N N N 37.878 32.828 0.567  3.871  1.612  -0.702 H12  KAX 55 
KAX H13  H13 H 0 1 N N N N N N 35.745 33.875 -0.144 1.841  0.636  -0.398 H13  KAX 56 
KAX H14  H14 H 0 1 N N N N N N 35.076 31.049 -1.139 2.071  -0.389 2.340  H14  KAX 57 
KAX H15  H15 H 0 1 N N N N N N 33.201 32.767 -0.896 1.271  -1.211 -0.321 H15  KAX 58 
KAX H16  H16 H 0 1 N N N N N N 33.422 32.039 -2.523 2.382  -2.424 0.360  H16  KAX 59 
KAX H17  H17 H 0 1 N N N N N N 36.052 33.147 -3.060 4.147  -1.735 0.783  H17  KAX 60 
KAX H18  H18 H 0 1 N N N N N N 36.438 31.395 -2.972 4.250  -1.029 2.418  H18  KAX 61 
KAX H19  H19 H 0 1 N N N N N N 34.926 36.591 2.666  -4.260 1.744  -0.384 H19  KAX 62 
KAX H20  H20 H 0 1 N N N N N N 41.444 38.209 -1.511 8.334  -1.428 -3.867 H20  KAX 63 
KAX H21  H21 H 0 1 N N N N N N 40.393 38.014 -2.746 9.938  -1.104 -3.490 H21  KAX 64 
KAX H22  H22 H 0 1 N N N N N N 38.085 41.692 1.454  -7.765 2.031  -3.698 H22  KAX 65 
KAX H23  H23 H 0 1 N N N N N N 37.809 40.731 2.745  -9.209 1.230  -4.008 H23  KAX 66 
KAX H24  H24 H 0 1 N N N N N N 35.079 32.166 4.240  -0.482 4.517  0.664  H24  KAX 67 
KAX H25  H25 H 0 1 N N N N N N 32.900 36.493 -3.930 -0.065 -2.863 -1.226 H25  KAX 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KAX O35A P35  DOUB N N 1  
KAX O35B P35  SING N N 2  
KAX P35  O35  SING N N 3  
KAX P35  O23  SING N N 4  
KAX C36  C31  SING N N 5  
KAX C36  C34  SING N N 6  
KAX O35  C35  SING N N 7  
KAX N17  C18  DOUB Y N 8  
KAX N17  C15  SING Y N 9  
KAX C18  N19  SING Y N 10 
KAX C35  C34  SING N N 11 
KAX N16  C16  SING N N 12 
KAX N19  C31  SING N N 13 
KAX N19  C14  SING Y N 14 
KAX C15  C16  DOUB Y N 15 
KAX C15  C14  SING Y N 16 
KAX C31  C32  SING N N 17 
KAX C16  N11  SING Y N 18 
KAX C14  N13  DOUB Y N 19 
KAX C34  C33  SING N N 20 
KAX O23  C23  SING N N 21 
KAX N11  C12  DOUB Y N 22 
KAX N13  C12  SING Y N 23 
KAX C32  C33  SING N N 24 
KAX C32  F32  SING N N 25 
KAX C22  C23  SING N N 26 
KAX C22  C21  SING N N 27 
KAX C23  C24  SING N N 28 
KAX C33  O33  SING N N 29 
KAX C2   N3   DOUB Y N 30 
KAX C2   N1   SING Y N 31 
KAX N3   C4   SING Y N 32 
KAX N1   C6   DOUB Y N 33 
KAX O33  P25  SING N N 34 
KAX C4   N9   SING Y N 35 
KAX C4   C5   DOUB Y N 36 
KAX C24  C25  SING N N 37 
KAX C24  O24  SING N N 38 
KAX C21  N9   SING N N 39 
KAX C21  O24  SING N N 40 
KAX C6   C5   SING Y N 41 
KAX C6   N6   SING N N 42 
KAX N9   C8   SING Y N 43 
KAX C5   N7   SING Y N 44 
KAX C25  O25  SING N N 45 
KAX O25  P25  SING N N 46 
KAX C8   N7   DOUB Y N 47 
KAX P25  O25B DOUB N N 48 
KAX P25  O25A SING N N 49 
KAX C12  H1   SING N N 50 
KAX C18  H2   SING N N 51 
KAX C2   H3   SING N N 52 
KAX C21  H4   SING N N 53 
KAX C22  H5   SING N N 54 
KAX C22  H6   SING N N 55 
KAX C23  H7   SING N N 56 
KAX C24  H8   SING N N 57 
KAX C25  H9   SING N N 58 
KAX C25  H10  SING N N 59 
KAX C31  H11  SING N N 60 
KAX C32  H12  SING N N 61 
KAX C33  H13  SING N N 62 
KAX C34  H14  SING N N 63 
KAX C35  H15  SING N N 64 
KAX C35  H16  SING N N 65 
KAX C36  H17  SING N N 66 
KAX C36  H18  SING N N 67 
KAX C8   H19  SING N N 68 
KAX N16  H20  SING N N 69 
KAX N16  H21  SING N N 70 
KAX N6   H22  SING N N 71 
KAX N6   H23  SING N N 72 
KAX O25A H24  SING N N 73 
KAX O35B H25  SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KAX InChI            InChI                1.06  "InChI=1S/C21H25FN10O9P2/c22-14-10(31-7-29-15-18(23)25-5-27-20(15)31)1-9-3-37-42(33,34)40-11-2-13(32-8-30-16-19(24)26-6-28-21(16)32)39-12(11)4-38-43(35,36)41-17(9)14/h5-14,17H,1-4H2,(H,33,34)(H,35,36)(H2,23,25,27)(H2,24,26,28)/t9-,10-,11+,12-,13-,14+,17-/m1/s1" 
KAX InChIKey         InChI                1.06  GDZZWFCZGHMWGL-DRCAKWDSSA-N                                                                                                                                                                                                                                           
KAX SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@H]3C[C@@H]4O[P](O)(=O)OC[C@H]5C[C@H]([C@H](F)[C@@H]5O[P](O)(=O)OC[C@H]4O3)n6cnc7c(N)ncnc67"                                                                                                                                                       
KAX SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3C[CH]4O[P](O)(=O)OC[CH]5C[CH]([CH](F)[CH]5O[P](O)(=O)OC[CH]4O3)n6cnc7c(N)ncnc67"                                                                                                                                                                
KAX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@@H]4COP(=O)(O[C@H]5C[C@@H](O[C@@H]5COP(=O)(O[C@H]4[C@H]3F)O)n6cnc7c6ncnc7N)O)N"                                                                                                                                                         
KAX SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3CC4COP(=O)(OC5CC(OC5COP(=O)(OC4C3F)O)n6cnc7c6ncnc7N)O)N"                                                                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           KAX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "9-[(1~{R},6~{R},8~{R},10~{S},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-18-fluoranyl-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]purin-6-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KAX "Create component"  2022-05-23 PDBE 
KAX "Modify descriptor" 2022-08-22 RCSB 
KAX "Initial release"   2023-11-29 RCSB 
# 
