data_K2X
# 
_chem_comp.id                                    K2X 
_chem_comp.name                                  "(3-chlorophenyl)methyl [(2S)-3-cyclohexyl-1-({(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}amino)-1-oxopropan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H34 Cl N3 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        512.062 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K2X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TQT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K2X C1  C1  C  0 1 N N N N N N -11.003 -19.239 -18.251 -4.381 1.195  -0.565 C1  K2X 1  
K2X C12 C2  C  0 1 N N N N N N -10.279 -16.894 -17.706 -2.075 0.956  -0.001 C12 K2X 2  
K2X C13 C3  C  0 1 N N N N N N -7.500  -13.740 -18.156 2.179  2.397  0.516  C13 K2X 3  
K2X C14 C4  C  0 1 N N S N N N -9.838  -14.509 -17.468 0.322  0.731  0.374  C14 K2X 4  
K2X C15 C5  C  0 1 N N N N N N -11.295 -14.098 -17.501 1.197  -0.401 0.847  C15 K2X 5  
K2X C16 C6  C  0 1 N N N N N N -6.772  -12.623 -18.901 2.108  2.728  -0.976 C16 K2X 6  
K2X C17 C7  C  0 1 N N S N N N -13.218 -13.043 -16.406 3.273  -1.674 0.762  C17 K2X 7  
K2X C18 C8  C  0 1 N N N N N N -5.257  -12.820 -18.893 3.505  3.088  -1.486 C18 K2X 8  
K2X C19 C9  C  0 1 N N N N N N -14.061 -13.872 -15.432 4.340  -1.919 -0.307 C19 K2X 9  
K2X C2  C10 C  0 1 Y N N N N N -12.396 -19.121 -18.842 -5.733 0.718  -0.100 C2  K2X 10 
K2X C20 C11 C  0 1 N N S N N N -14.084 -15.337 -15.855 3.664  -2.316 -1.621 C20 K2X 11 
K2X C21 C12 C  0 1 N N N N N N -14.841 -15.533 -17.168 4.724  -2.599 -2.711 C21 K2X 12 
K2X C22 C13 C  0 1 N N N N N N -15.692 -16.791 -16.980 4.824  -1.228 -3.416 C22 K2X 13 
K2X C23 C14 C  0 1 N N N N N N -4.742  -12.904 -17.462 4.030  4.303  -0.719 C23 K2X 14 
K2X C24 C15 C  0 1 N N N N N N -14.860 -16.204 -14.901 2.863  -1.158 -2.174 C24 K2X 15 
K2X C25 C16 C  0 1 N N N N N N -5.469  -13.997 -16.689 4.101  3.973  0.773  C25 K2X 16 
K2X C26 C17 C  0 1 N N N N N N -6.983  -13.796 -16.721 2.704  3.613  1.283  C26 K2X 17 
K2X C3  C18 C  0 1 Y N N N N N -13.308 -20.169 -18.712 -6.434 1.442  0.845  C3  K2X 18 
K2X C34 C19 C  0 1 N N N N N N -9.000  -13.444 -18.174 0.782  2.037  1.025  C34 K2X 19 
K2X C4  C20 C  0 1 Y N N N N N -14.585 -20.066 -19.258 -7.674 1.005  1.272  C4  K2X 20 
K2X C5  C21 C  0 1 Y N N N N N -14.958 -18.911 -19.936 -8.213 -0.157 0.754  C5  K2X 21 
K2X C6  C22 C  0 1 Y N N N N N -14.049 -17.864 -20.070 -7.512 -0.883 -0.192 C6  K2X 22 
K2X C7  C23 C  0 1 Y N N N N N -12.774 -17.972 -19.524 -6.273 -0.442 -0.624 C7  K2X 23 
K2X C8  C24 C  0 1 N N S N N N -13.223 -11.549 -16.035 3.951  -1.400 2.106  C8  K2X 24 
K2X N13 N1  N  0 1 N N N N N N -9.637  -15.796 -18.120 -1.068 0.462  0.748  N13 K2X 25 
K2X N16 N2  N  0 1 N N N N N N -11.842 -13.555 -16.408 2.457  -0.519 0.382  N16 K2X 26 
K2X N23 N3  N  0 1 N N N N N N -15.679 -17.025 -15.548 3.533  -0.571 -3.181 N23 K2X 27 
K2X O11 O1  O  0 1 N N N N N N -10.229 -18.077 -18.547 -3.349 0.626  0.282  O11 K2X 28 
K2X O26 O2  O  0 1 N N N N N N -14.727 -16.150 -13.693 1.774  -0.810 -1.769 O26 K2X 29 
K2X O33 O3  O  0 1 N N N N N N -10.897 -16.949 -16.656 -1.832 1.699  -0.931 O33 K2X 30 
K2X O38 O4  O  0 1 N N N N N N -11.946 -14.271 -18.515 0.768  -1.206 1.646  O38 K2X 31 
K2X O9  O5  O  0 1 N N N N N N -14.544 -10.972 -16.142 2.955  -1.171 3.104  O9  K2X 32 
K2X CL1 CL1 CL 0 0 N N N N N N -14.514 -16.360 -20.938 -8.188 -2.343 -0.844 CL1 K2X 33 
K2X S1  S1  S  0 1 N Y N N N N -12.441 -11.410 -14.400 4.962  -2.831 2.577  S1  K2X 34 
K2X H1  H1  H  0 1 N N N N N N -11.082 -19.352 -17.160 -4.219 0.880  -1.596 H1  K2X 35 
K2X H2  H2  H  0 1 N N N N N N -10.504 -20.123 -18.676 -4.340 2.283  -0.507 H2  K2X 36 
K2X H3  H3  H  0 1 N N N N N N -7.308  -14.702 -18.655 2.851  1.553  0.669  H3  K2X 37 
K2X H4  H4  H  0 1 N N N N N N -9.512  -14.573 -16.419 0.397  0.820  -0.710 H4  K2X 38 
K2X H5  H5  H  0 1 N N N N N N -7.007  -11.663 -18.419 1.734  1.862  -1.523 H5  K2X 39 
K2X H6  H6  H  0 1 N N N N N N -7.122  -12.605 -19.944 1.436  3.572  -1.130 H6  K2X 40 
K2X H7  H7  H  0 1 N N N N N N -13.646 -13.150 -17.414 2.637  -2.555 0.849  H7  K2X 41 
K2X H8  H8  H  0 1 N N N N N N -5.009  -13.752 -19.423 4.176  2.243  -1.333 H8  K2X 42 
K2X H9  H9  H  0 1 N N N N N N -4.778  -11.970 -19.402 3.454  3.323  -2.549 H9  K2X 43 
K2X H10 H10 H  0 1 N N N N N N -13.629 -13.794 -14.423 4.920  -1.008 -0.457 H10 K2X 44 
K2X H11 H11 H  0 1 N N N N N N -15.090 -13.482 -15.422 5.002  -2.721 0.018  H11 K2X 45 
K2X H12 H12 H  0 1 N N N N N N -13.055 -15.713 -15.958 3.025  -3.186 -1.472 H12 K2X 46 
K2X H13 H13 H  0 1 N N N N N N -14.134 -15.670 -18.000 5.678  -2.878 -2.264 H13 K2X 47 
K2X H14 H14 H  0 1 N N N N N N -15.484 -14.664 -17.372 4.378  -3.368 -3.401 H14 K2X 48 
K2X H15 H15 H  0 1 N N N N N N -16.719 -16.623 -17.338 5.632  -0.638 -2.982 H15 K2X 49 
K2X H16 H16 H  0 1 N N N N N N -15.251 -17.643 -17.518 4.988  -1.365 -4.485 H16 K2X 50 
K2X H17 H17 H  0 1 N N N N N N -3.665  -13.129 -17.479 5.025  4.560  -1.082 H17 K2X 51 
K2X H18 H18 H  0 1 N N N N N N -4.907  -11.938 -16.962 3.358  5.148  -0.873 H18 K2X 52 
K2X H19 H19 H  0 1 N N N N N N -5.229  -14.972 -17.138 4.773  3.128  0.926  H19 K2X 53 
K2X H20 H20 H  0 1 N N N N N N -5.129  -13.981 -15.643 4.475  4.839  1.319  H20 K2X 54 
K2X H21 H21 H  0 1 N N N N N N -7.231  -12.852 -16.213 2.032  4.457  1.129  H21 K2X 55 
K2X H22 H22 H  0 1 N N N N N N -7.468  -14.633 -16.197 2.755  3.377  2.346  H22 K2X 56 
K2X H23 H23 H  0 1 N N N N N N -13.021 -21.067 -18.184 -6.013 2.351  1.251  H23 K2X 57 
K2X H24 H24 H  0 1 N N N N N N -9.171  -12.479 -17.675 0.811  1.913  2.108  H24 K2X 58 
K2X H25 H25 H  0 1 N N N N N N -9.330  -13.379 -19.221 0.085  2.836  0.770  H25 K2X 59 
K2X H26 H26 H  0 1 N N N N N N -15.285 -20.882 -19.155 -8.221 1.571  2.011  H26 K2X 60 
K2X H27 H27 H  0 1 N N N N N N -15.949 -18.826 -20.357 -9.182 -0.499 1.088  H27 K2X 61 
K2X H28 H28 H  0 1 N N N N N N -12.074 -17.157 -19.631 -5.725 -1.008 -1.362 H28 K2X 62 
K2X H29 H29 H  0 1 N N N N N N -12.543 -11.026 -16.724 4.587  -0.519 2.019  H29 K2X 63 
K2X H30 H30 H  0 1 N N N N N N -9.006  -15.860 -18.893 -1.265 -0.071 1.533  H30 K2X 64 
K2X H31 H31 H  0 1 N N N N N N -11.299 -13.496 -15.570 2.823  0.162  -0.205 H31 K2X 65 
K2X H32 H32 H  0 1 N N N N N N -16.228 -17.729 -15.097 3.205  0.189  -3.687 H32 K2X 66 
K2X H33 H33 H  0 1 N N N N N N -14.508 -10.052 -15.906 2.376  -0.419 2.918  H33 K2X 67 
K2X H34 H34 H  0 1 N N N N N N -12.495 -10.129 -14.183 5.842  -2.926 1.564  H34 K2X 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K2X CL1 C6  SING N N 1  
K2X C6  C5  DOUB Y N 2  
K2X C6  C7  SING Y N 3  
K2X C5  C4  SING Y N 4  
K2X C7  C2  DOUB Y N 5  
K2X C4  C3  DOUB Y N 6  
K2X C16 C18 SING N N 7  
K2X C16 C13 SING N N 8  
K2X C18 C23 SING N N 9  
K2X C2  C3  SING Y N 10 
K2X C2  C1  SING N N 11 
K2X O11 C1  SING N N 12 
K2X O11 C12 SING N N 13 
K2X O38 C15 DOUB N N 14 
K2X C34 C13 SING N N 15 
K2X C34 C14 SING N N 16 
K2X C13 C26 SING N N 17 
K2X N13 C12 SING N N 18 
K2X N13 C14 SING N N 19 
K2X C12 O33 DOUB N N 20 
K2X C15 C14 SING N N 21 
K2X C15 N16 SING N N 22 
K2X C23 C25 SING N N 23 
K2X C21 C22 SING N N 24 
K2X C21 C20 SING N N 25 
K2X C22 N23 SING N N 26 
K2X C26 C25 SING N N 27 
K2X N16 C17 SING N N 28 
K2X C17 C8  SING N N 29 
K2X C17 C19 SING N N 30 
K2X O9  C8  SING N N 31 
K2X C20 C19 SING N N 32 
K2X C20 C24 SING N N 33 
K2X N23 C24 SING N N 34 
K2X C24 O26 DOUB N N 35 
K2X C8  S1  SING N N 36 
K2X C1  H1  SING N N 37 
K2X C1  H2  SING N N 38 
K2X C13 H3  SING N N 39 
K2X C14 H4  SING N N 40 
K2X C16 H5  SING N N 41 
K2X C16 H6  SING N N 42 
K2X C17 H7  SING N N 43 
K2X C18 H8  SING N N 44 
K2X C18 H9  SING N N 45 
K2X C19 H10 SING N N 46 
K2X C19 H11 SING N N 47 
K2X C20 H12 SING N N 48 
K2X C21 H13 SING N N 49 
K2X C21 H14 SING N N 50 
K2X C22 H15 SING N N 51 
K2X C22 H16 SING N N 52 
K2X C23 H17 SING N N 53 
K2X C23 H18 SING N N 54 
K2X C25 H19 SING N N 55 
K2X C25 H20 SING N N 56 
K2X C26 H21 SING N N 57 
K2X C26 H22 SING N N 58 
K2X C3  H23 SING N N 59 
K2X C34 H24 SING N N 60 
K2X C34 H25 SING N N 61 
K2X C4  H26 SING N N 62 
K2X C5  H27 SING N N 63 
K2X C7  H28 SING N N 64 
K2X C8  H29 SING N N 65 
K2X N13 H30 SING N N 66 
K2X N16 H31 SING N N 67 
K2X N23 H32 SING N N 68 
K2X O9  H33 SING N N 69 
K2X S1  H34 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K2X SMILES           ACDLabs              12.01 "Clc1cccc(c1)COC(=O)NC(CC1CCCCC1)C(=O)NC(CC1CCNC1=O)C(O)S"                                                                                                                                                                              
K2X InChI            InChI                1.06  "InChI=1S/C24H34ClN3O5S/c25-18-8-4-7-16(11-18)14-33-24(32)28-19(12-15-5-2-1-3-6-15)22(30)27-20(23(31)34)13-17-9-10-26-21(17)29/h4,7-8,11,15,17,19-20,23,31,34H,1-3,5-6,9-10,12-14H2,(H,26,29)(H,27,30)(H,28,32)/t17-,19-,20-,23-/m0/s1" 
K2X InChIKey         InChI                1.06  JHCCETMXTYSPGK-UDSSINMLSA-N                                                                                                                                                                                                             
K2X SMILES_CANONICAL CACTVS               3.385 "O[C@@H](S)[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)OCc3cccc(Cl)c3"                                                                                                                                                            
K2X SMILES           CACTVS               3.385 "O[CH](S)[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)OCc3cccc(Cl)c3"                                                                                                                                                                  
K2X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)COC(=O)N[C@@H](CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)S"                                                                                                                                                        
K2X SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)COC(=O)NC(CC2CCCCC2)C(=O)NC(CC3CCNC3=O)C(O)S"                                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
K2X "SYSTEMATIC NAME" ACDLabs              12.01 "(3-chlorophenyl)methyl [(2S)-3-cyclohexyl-1-({(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}amino)-1-oxopropan-2-yl]carbamate"                                        
K2X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3-chlorophenyl)methyl ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(1~{S},2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-1-sulfanyl-propan-2-yl]amino]propan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K2X "Create component" 2023-08-10 RCSB 
K2X "Initial release"  2024-08-14 RCSB 
K2X "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            K2X 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
