data_GPX
# 
_chem_comp.id                                    GPX 
_chem_comp.name                                  
;GUANOSINE 5'-DIPHOSPHATE 2':3'-CYCLIC MONOPHOSPHATE
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H14 N5 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        505.165 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GPX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1CH8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GPX P1     P1     P 0 1 N N S 2.758  51.660 41.473 3.666  0.168  -2.088 P1     GPX 1  
GPX N9     N9     N 0 1 Y N N 3.395  48.178 44.034 -1.062 0.165  -2.510 N9     GPX 2  
GPX C8     C8     C 0 1 Y N N 2.736  46.997 44.183 -2.000 1.063  -2.090 C8     GPX 3  
GPX N7     N7     N 0 1 Y N N 3.431  46.009 44.670 -2.848 1.296  -3.049 N7     GPX 4  
GPX C5     C5     C 0 1 Y N N 4.692  46.586 44.875 -2.506 0.563  -4.137 C5     GPX 5  
GPX C6     C6     C 0 1 Y N N 5.844  46.026 45.374 -3.049 0.416  -5.435 C6     GPX 6  
GPX O6     O6     O 0 1 N N N 6.037  44.867 45.749 -4.046 1.033  -5.770 O6     GPX 7  
GPX N1     N1     N 0 1 Y N N 6.891  46.925 45.419 -2.432 -0.421 -6.298 N1     GPX 8  
GPX C2     C2     C 0 1 Y N N 6.779  48.231 45.013 -1.321 -1.110 -5.912 C2     GPX 9  
GPX N2     N2     N 0 1 N N N 7.856  49.008 45.086 -0.719 -1.958 -6.807 N2     GPX 10 
GPX N3     N3     N 0 1 Y N N 5.678  48.765 44.545 -0.807 -0.982 -4.709 N3     GPX 11 
GPX C4     C4     C 0 1 Y N N 4.679  47.895 44.495 -1.360 -0.167 -3.803 C4     GPX 12 
GPX O11    O11    O 0 1 N N N 2.515  52.196 40.115 4.244  1.647  -2.359 O11    GPX 13 
GPX O21    O21    O 0 1 N N N 3.944  52.332 42.057 4.613  -0.889 -2.506 O21    GPX 14 
GPX "O3'"  "O3'"  O 0 1 N N N 1.472  51.825 42.447 3.245  -0.012 -0.522 "O3'"  GPX 15 
GPX PA     PA     P 0 1 N N S -2.507 49.661 44.993 -0.140 -0.028 4.007  PA     GPX 16 
GPX O1A    O1A    O 0 1 N N N -3.651 50.598 44.904 -0.640 1.362  3.931  O1A    GPX 17 
GPX O2A    O2A    O 0 1 N N N -1.483 50.221 45.897 1.316  -0.037 4.693  O2A    GPX 18 
GPX O3A    O3A    O 0 1 N N N -2.909 48.189 45.527 -1.154 -0.915 4.889  O3A    GPX 19 
GPX "O5'"  "O5'"  O 0 1 N N N -1.774 49.318 43.592 -0.038 -0.644 2.523  "O5'"  GPX 20 
GPX PB     PB     P 0 1 N N N -4.310 47.439 45.314 -1.207 -0.246 6.352  PB     GPX 21 
GPX O1B    O1B    O 0 1 N N N -4.422 46.613 44.079 -1.691 1.147  6.239  O1B    GPX 22 
GPX O2B    O2B    O 0 1 N N N -5.364 48.475 45.316 -2.208 -1.087 7.291  O2B    GPX 23 
GPX O3B    O3B    O 0 1 N N N -4.469 46.557 46.490 0.266  -0.252 6.999  O3B    GPX 24 
GPX "C5'"  "C5'"  C 0 1 N N N -0.392 48.896 43.908 0.870  0.182  1.794  "C5'"  GPX 25 
GPX "C4'"  "C4'"  C 0 1 N N R 0.659  50.060 43.994 1.013  -0.351 0.368  "C4'"  GPX 26 
GPX "O4'"  "O4'"  O 0 1 N N N 1.858  49.663 44.622 -0.260 -0.314 -0.312 "O4'"  GPX 27 
GPX "C1'"  "C1'"  C 0 1 N N R 2.884  49.411 43.681 0.058  -0.349 -1.720 "C1'"  GPX 28 
GPX "C2'"  "C2'"  C 0 1 N N R 2.179  49.485 42.341 1.290  0.570  -1.870 "C2'"  GPX 29 
GPX "O2'"  "O2'"  O 0 1 N N N 3.006  50.075 41.325 2.216  -0.030 -2.809 "O2'"  GPX 30 
GPX "C3'"  "C3'"  C 0 1 N N R 1.057  50.482 42.624 1.931  0.571  -0.464 "C3'"  GPX 31 
GPX H8     H8     H 0 1 N N N 1.675  46.845 43.918 -2.033 1.514  -1.109 H8     GPX 32 
GPX HN1    HN1    H 0 1 N N N 7.794  46.607 45.770 -2.786 -0.539 -7.193 HN1    GPX 33 
GPX HN21   1HN2   H 0 0 N N N 7.772  49.978 44.784 0.074  -2.453 -6.548 HN21   GPX 34 
GPX HN22   2HN2   H 0 0 N N N 8.620  48.565 44.576 -1.089 -2.067 -7.697 HN22   GPX 35 
GPX HO1    HO1    H 0 1 N N N 1.755  51.765 39.740 4.473  1.690  -3.298 HO1    GPX 36 
GPX HOA2   2HOA   H 0 0 N N N -0.749 49.620 45.954 1.604  -0.960 4.724  HOA2   GPX 37 
GPX HOB2   2HOB   H 0 0 N N N -6.194 48.030 45.189 -2.211 -0.654 8.156  HOB2   GPX 38 
GPX HOB3   3HOB   H 0 0 N N N -5.299 46.112 46.363 0.544  -1.176 7.054  HOB3   GPX 39 
GPX "H5'1" "1H5'" H 0 0 N N N -0.379 48.297 44.848 1.843  0.172  2.285  "H5'1" GPX 40 
GPX "H5'2" "2H5'" H 0 0 N N N -0.050 48.123 43.179 0.489  1.203  1.764  "H5'2" GPX 41 
GPX "H4'"  "H4'"  H 0 1 N N N 0.166  50.872 44.577 1.407  -1.367 0.381  "H4'"  GPX 42 
GPX "H1'"  "H1'"  H 0 1 N N N 3.748  50.113 43.642 0.304  -1.365 -2.028 "H1'"  GPX 43 
GPX "H2'"  "H2'"  H 0 1 N N N 1.874  48.474 41.980 0.996  1.569  -2.192 "H2'"  GPX 44 
GPX "H3'"  "H3'"  H 0 1 N N N 0.187  50.468 41.925 1.965  1.577  -0.045 "H3'"  GPX 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GPX P1    O11    SING N N 1  
GPX P1    O21    DOUB N N 2  
GPX P1    "O3'"  SING N N 3  
GPX P1    "O2'"  SING N N 4  
GPX N9    C8     SING Y N 5  
GPX N9    C4     SING Y N 6  
GPX N9    "C1'"  SING N N 7  
GPX C8    N7     DOUB Y N 8  
GPX C8    H8     SING N N 9  
GPX N7    C5     SING Y N 10 
GPX C5    C6     SING Y N 11 
GPX C5    C4     DOUB Y N 12 
GPX C6    O6     DOUB N N 13 
GPX C6    N1     SING Y N 14 
GPX N1    C2     SING Y N 15 
GPX N1    HN1    SING N N 16 
GPX C2    N2     SING N N 17 
GPX C2    N3     DOUB Y N 18 
GPX N2    HN21   SING N N 19 
GPX N2    HN22   SING N N 20 
GPX N3    C4     SING Y N 21 
GPX O11   HO1    SING N N 22 
GPX "O3'" "C3'"  SING N N 23 
GPX PA    O1A    DOUB N N 24 
GPX PA    O2A    SING N N 25 
GPX PA    O3A    SING N N 26 
GPX PA    "O5'"  SING N N 27 
GPX O2A   HOA2   SING N N 28 
GPX O3A   PB     SING N N 29 
GPX "O5'" "C5'"  SING N N 30 
GPX PB    O1B    DOUB N N 31 
GPX PB    O2B    SING N N 32 
GPX PB    O3B    SING N N 33 
GPX O2B   HOB2   SING N N 34 
GPX O3B   HOB3   SING N N 35 
GPX "C5'" "C4'"  SING N N 36 
GPX "C5'" "H5'1" SING N N 37 
GPX "C5'" "H5'2" SING N N 38 
GPX "C4'" "O4'"  SING N N 39 
GPX "C4'" "C3'"  SING N N 40 
GPX "C4'" "H4'"  SING N N 41 
GPX "O4'" "C1'"  SING N N 42 
GPX "C1'" "C2'"  SING N N 43 
GPX "C1'" "H1'"  SING N N 44 
GPX "C2'" "O2'"  SING N N 45 
GPX "C2'" "C3'"  SING N N 46 
GPX "C2'" "H2'"  SING N N 47 
GPX "C3'" "H3'"  SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GPX SMILES           ACDLabs              10.04 "O=P3(OC4C(OC(n1c2N=C(N)NC(=O)c2nc1)C4O3)COP(=O)(O)OP(=O)(O)O)O"                                                                                                                                          
GPX SMILES_CANONICAL CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@H]4O[P@@](O)(=O)O[C@@H]34"                                                                                                              
GPX SMILES           CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH]4O[P](O)(=O)O[CH]34"                                                                                                                        
GPX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@H]4[C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O[P@@](=O)(O4)O)N=C(NC2=O)N"                                                                                                                
GPX SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C4C(C(O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(O4)O)N=C(NC2=O)N"                                                                                                                                        
GPX InChI            InChI                1.03  "InChI=1S/C10H14N5O13P3/c11-10-13-7-4(8(16)14-10)12-2-15(7)9-6-5(26-31(22,23)27-6)3(25-9)1-24-30(20,21)28-29(17,18)19/h2-3,5-6,9H,1H2,(H,20,21)(H,22,23)(H2,17,18,19)(H3,11,13,14,16)/t3-,5-,6-,9-/m1/s1" 
GPX InChIKey         InChI                1.03  NGYWTCOGOZELRS-UUOKFMHZSA-N                                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GPX "SYSTEMATIC NAME" ACDLabs              10.04 "[(2S,3aR,4R,6R,6aR)-6-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methyl trihydrogen diphosphate" 
GPX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,3S,5R,6R,8R)-8-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-3-oxo-2,4,7-trioxa-3$l^{5}-phosphabicyclo[3.3.0]octan-6-yl]methyl phosphono hydrogen phosphate"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GPX "Create component"  1999-07-08 RCSB 
GPX "Modify descriptor" 2011-06-04 RCSB 
# 
