data_F7X
#

_chem_comp.id                                   F7X
_chem_comp.name                                 "[(2R)-2-[2-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate"
_chem_comp.type                                 "DNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H15 N6 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-07
_chem_comp.pdbx_modified_date                   2020-11-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       362.236
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    F7X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7BPG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F7X  OP2    O1   O  0  1  N  N  N   0.548  29.910  23.417  -6.461  -0.349   0.721  OP2    F7X   1  
F7X  P      P1   P  0  1  N  N  N  -1.025  29.643  23.289  -5.446   0.058  -0.461  P      F7X   2  
F7X  OP1    O2   O  0  1  N  N  N  -1.137  30.611  22.158  -5.674   1.470  -0.841  OP1    F7X   3  
F7X  "O3'"  O3   O  0  1  N  N  N  -1.311  28.159  22.797  -3.930  -0.123   0.048  "O3'"  F7X   4  
F7X  "C3'"  C1   C  0  1  N  N  N  -2.674  27.770  22.686  -3.363   0.660   1.101  "C3'"  F7X   5  
F7X  "C2'"  C2   C  0  1  N  N  R  -2.710  26.272  22.609  -1.912   0.233   1.330  "C2'"  F7X   6  
F7X  "C1'"  C3   C  0  1  N  N  N  -1.734  25.791  21.527  -1.859  -1.274   1.593  "C1'"  F7X   7  
F7X  "O1'"  O4   O  0  1  N  N  N  -2.070  26.319  20.220  -2.494  -1.967   0.517  "O1'"  F7X   8  
F7X  "N2'"  N1   N  0  1  N  N  N  -2.295  25.739  23.908  -1.117   0.549   0.141  "N2'"  F7X   9  
F7X  C2A    C4   C  0  1  N  N  N  -3.163  25.173  24.734   0.212   0.746   0.251  C2A    F7X  10  
F7X  O2A    O5   O  0  1  N  N  N  -4.361  25.082  24.538   0.749   0.661   1.335  O2A    F7X  11  
F7X  C2B    C5   C  0  1  N  N  N  -2.583  24.622  25.995   1.030   1.071  -0.972  C2B    F7X  12  
F7X  N9     N2   N  0  1  Y  N  N  -3.692  24.064  26.803   2.435   1.237  -0.590  N9     F7X  13  
F7X  C4     C6   C  0  1  Y  N  N  -3.943  22.779  26.819   3.361   0.239  -0.457  C4     F7X  14  
F7X  N3     N3   N  0  1  N  N  N  -3.327  21.823  26.146   3.328  -1.091  -0.607  N3     F7X  15  
F7X  C2     C7   C  0  1  N  N  N  -3.738  20.539  26.288   4.400  -1.824  -0.408  C2     F7X  16  
F7X  N2     N4   N  0  1  N  N  N  -3.102  19.555  25.608   4.318  -3.184  -0.575  N2     F7X  17  
F7X  N1     N5   N  0  1  N  N  N  -4.815  20.245  27.171   5.591  -1.273  -0.041  N1     F7X  18  
F7X  C6     C8   C  0  1  N  N  N  -5.445  21.273  27.838   5.702   0.063   0.131  C6     F7X  19  
F7X  O6     O6   O  0  1  N  N  N  -6.397  20.995  28.593   6.763   0.565   0.460  O6     F7X  20  
F7X  C5     C9   C  0  1  Y  N  N  -4.985  22.539  27.647   4.555   0.864  -0.080  C5     F7X  21  
F7X  N7     N6   N  0  1  Y  N  N  -5.373  23.729  28.142   4.306   2.194  -0.003  N7     F7X  22  
F7X  C8     C10  C  0  1  Y  N  N  -4.572  24.656  27.617   3.060   2.417  -0.307  C8     F7X  23  
F7X  OP3    O7   O  0  1  N  Y  N  -1.181  30.233  24.653  -5.701  -0.889  -1.737  OP4    F7X  24  
F7X  H1     H1   H  0  1  N  N  N   0.815  30.548  22.766  -6.368  -1.263   1.022  H1     F7X  25  
F7X  H2     H2   H  0  1  N  N  N  -3.116  28.204  21.777  -3.393   1.714   0.826  H2     F7X  26  
F7X  H3     H3   H  0  1  N  N  N  -3.236  28.115  23.567  -3.935   0.507   2.016  H3     F7X  27  
F7X  H4     H4   H  0  1  N  N  N  -3.727  25.934  22.362  -1.507   0.766   2.190  H4     F7X  28  
F7X  H5     H5   H  0  1  N  N  N  -1.764  24.692  21.485  -0.820  -1.593   1.667  H5     F7X  29  
F7X  H6     H6   H  0  1  N  N  N  -0.719  26.120  21.793  -2.376  -1.498   2.526  H6     F7X  30  
F7X  H7     H7   H  0  1  N  Y  N  -1.445  26.000  19.579  -2.498  -2.929   0.617  H7     F7X  31  
F7X  H8     H8   H  0  1  N  N  N  -1.334  25.804  24.178  -1.546   0.617  -0.726  H8     F7X  32  
F7X  H9     H9   H  0  1  N  N  N  -1.858  23.829  25.757   0.944   0.259  -1.693  H9     F7X  33  
F7X  H10    H10  H  0  1  N  N  N  -2.079  25.423  26.555   0.664   1.995  -1.419  H10    F7X  34  
F7X  H11    H11  H  0  1  N  N  N  -2.335  19.778  25.006   3.477  -3.590  -0.836  H11    F7X  35  
F7X  H12    H12  H  0  1  N  N  N  -3.399  18.605  25.708   5.101  -3.738  -0.431  H12    F7X  36  
F7X  H13    H13  H  0  1  N  N  N  -5.112  19.300  27.306   6.364  -1.843   0.098  H13    F7X  37  
F7X  H14    H14  H  0  1  N  N  N  -4.625  25.716  27.817   2.592   3.390  -0.331  H14    F7X  38  
F7X  H15    H15  H  0  1  N  N  N  -1.333  31.168  24.579  -6.597  -0.832  -2.097  H15    F7X  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F7X  "O1'"  "C1'"  SING  N  N   1  
F7X  "C1'"  "C2'"  SING  N  N   2  
F7X  OP1    P      DOUB  N  N   3  
F7X  "C2'"  "C3'"  SING  N  N   4  
F7X  "C2'"  "N2'"  SING  N  N   5  
F7X  "C3'"  "O3'"  SING  N  N   6  
F7X  "O3'"  P      SING  N  N   7  
F7X  P      OP2    SING  N  N   8  
F7X  "N2'"  C2A    SING  N  N   9  
F7X  O2A    C2A    DOUB  N  N  10  
F7X  C2A    C2B    SING  N  N  11  
F7X  N2     C2     SING  N  N  12  
F7X  C2B    N9     SING  N  N  13  
F7X  N3     C2     DOUB  N  N  14  
F7X  N3     C4     SING  N  N  15  
F7X  C2     N1     SING  N  N  16  
F7X  N9     C4     SING  Y  N  17  
F7X  N9     C8     SING  Y  N  18  
F7X  C4     C5     DOUB  Y  N  19  
F7X  N1     C6     SING  N  N  20  
F7X  C8     N7     DOUB  Y  N  21  
F7X  C5     C6     SING  N  N  22  
F7X  C5     N7     SING  Y  N  23  
F7X  C6     O6     DOUB  N  N  24  
F7X  P      OP3    SING  N  N  25  
F7X  OP2    H1     SING  N  N  26  
F7X  "C3'"  H2     SING  N  N  27  
F7X  "C3'"  H3     SING  N  N  28  
F7X  "C2'"  H4     SING  N  N  29  
F7X  "C1'"  H5     SING  N  N  30  
F7X  "C1'"  H6     SING  N  N  31  
F7X  "O1'"  H7     SING  N  N  32  
F7X  "N2'"  H8     SING  N  N  33  
F7X  C2B    H9     SING  N  N  34  
F7X  C2B    H10    SING  N  N  35  
F7X  N2     H11    SING  N  N  36  
F7X  N2     H12    SING  N  N  37  
F7X  N1     H13    SING  N  N  38  
F7X  C8     H14    SING  N  N  39  
F7X  OP3    H15    SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F7X  InChI             InChI                 1.03   "InChI=1S/C10H15N6O7P/c11-10-14-8-7(9(19)15-10)12-4-16(8)1-6(18)13-5(2-17)3-23-24(20,21)22/h4-5,17H,1-3H2,(H,13,18)(H2,20,21,22)(H3,11,14,15,19)/t5-/m1/s1"  
F7X  InChIKey          InChI                 1.03   UGPARWCAUBOAFC-RXMQYKEDSA-N  
F7X  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(CC(=O)N[C@H](CO)CO[P](O)(O)=O)cnc2C(=O)N1"  
F7X  SMILES            CACTVS                3.385  "NC1=Nc2n(CC(=O)N[CH](CO)CO[P](O)(O)=O)cnc2C(=O)N1"  
F7X  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1CC(=O)N[C@H](CO)COP(=O)(O)O)N=C(NC2=O)N"  
F7X  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1CC(=O)NC(CO)COP(=O)(O)O)N=C(NC2=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          F7X
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R})-2-[2-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F7X  "Create component"      2020-04-07  PDBJ  
F7X  "Modify internal type"  2020-10-29  PDBJ  
F7X  "Modify linking type"   2020-10-29  PDBJ  
F7X  "Modify atom id"        2020-11-18  PDBJ  
F7X  "Initial release"       2020-11-25  RCSB  
##
