data_9KX
# 
_chem_comp.id                                    9KX 
_chem_comp.name                                  "(2S)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]oct-4,6-diene-3-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H38 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-05-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.589 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9KX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ZWI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9KX O1  O1  O 0 1 N N N N N N 16.110 8.894  19.599 -4.978 -3.474 -0.870 O1  9KX 1  
9KX C1  C1  C 0 1 N N R N N N 14.714 8.756  19.434 -5.138 -2.077 -0.617 C1  9KX 2  
9KX C2  C2  C 0 1 N N N N N N 14.408 7.534  18.611 -6.393 -1.849 0.194  C2  9KX 3  
9KX C3  C3  C 0 1 N N R N N N 14.782 6.194  19.199 -6.704 -0.451 0.678  C3  9KX 4  
9KX C4  C4  C 0 1 N N N N N N 14.310 6.030  20.637 -5.503 0.068  1.479  C4  9KX 5  
9KX C5  C5  C 0 1 N N N N N N 14.287 7.325  21.451 -4.247 -0.160 0.668  C5  9KX 6  
9KX C6  C6  C 0 1 N N N N N N 14.484 7.296  22.741 -3.432 0.850  0.385  C6  9KX 7  
9KX C7  C7  C 0 1 N N N N N N 14.733 6.058  23.497 -2.153 0.595  -0.296 C7  9KX 8  
9KX C8  C8  C 0 1 N N N N N N 14.622 6.030  24.815 -1.292 1.589  -0.487 C8  9KX 9  
9KX C9  C9  C 0 1 N N N N N N 13.803 7.657  17.425 -7.197 -2.845 0.472  C9  9KX 10 
9KX C10 C10 C 0 1 N N S N N N 14.901 4.791  25.582 0.026  1.389  -1.174 C10 9KX 11 
9KX C11 C11 C 0 1 N N R N N N 13.815 4.516  26.556 1.103  1.844  -0.149 C11 9KX 12 
9KX C12 C12 C 0 1 N N N N N N 13.714 5.677  27.508 0.943  3.333  0.051  C12 9KX 13 
9KX C13 C13 C 0 1 N N N N N N 13.310 6.941  26.783 -0.394 3.563  0.775  C13 9KX 14 
9KX C14 C14 C 0 1 N N N N N N 14.258 7.237  25.624 -1.576 3.012  -0.030 C14 9KX 15 
9KX C15 C15 C 0 1 N N N N N N 15.139 3.456  24.870 0.454  -0.058 -1.434 C15 9KX 16 
9KX C16 C16 C 0 1 N N N N N N 14.792 2.410  25.876 2.000  0.056  -1.542 C16 9KX 17 
9KX C17 C17 C 0 1 N N R N N N 14.280 3.183  27.106 2.400  1.332  -0.757 C17 9KX 18 
9KX C18 C18 C 0 1 N N N N N N 12.498 4.362  25.835 0.858  1.137  1.186  C18 9KX 19 
9KX C19 C19 C 0 1 N N S N N N 13.242 2.444  27.956 3.403  0.987  0.345  C19 9KX 20 
9KX C20 C20 C 0 1 N N N N N N 13.910 1.467  28.919 3.813  2.264  1.081  C20 9KX 21 
9KX O2  O2  O 0 1 N N N N N N 12.664 0.789  26.380 4.962  0.645  -1.395 O2  9KX 22 
9KX C21 C21 C 0 1 N N N N N N 12.282 1.725  27.095 4.622  0.347  -0.268 C21 9KX 23 
9KX C22 C22 C 0 1 N N N N N N 10.855 2.145  27.227 5.367  -0.596 0.466  C22 9KX 24 
9KX C23 C23 C 0 1 N N N N N N 9.929  1.211  27.239 6.465  -1.172 -0.086 C23 9KX 25 
9KX C24 C24 C 0 1 N N N N N N 8.523  1.582  27.420 7.238  -2.150 0.675  C24 9KX 26 
9KX C25 C25 C 0 1 N N N N N N 7.558  0.685  27.209 8.319  -2.717 0.132  C25 9KX 27 
9KX C26 C26 C 0 1 N N N N N N 6.139  1.140  27.392 9.116  -3.726 0.917  C26 9KX 28 
9KX O   O3  O 0 1 N N N N N N 14.199 5.152  18.393 -6.939 0.404  -0.443 O   9KX 29 
9KX C   C27 C 0 1 N N N N N N 13.998 8.659  20.791 -3.937 -1.558 0.184  C   9KX 30 
9KX H1  H1  H 0 1 N N N N N N 16.293 9.667  20.119 -5.703 -3.869 -1.373 H1  9KX 31 
9KX H2  H2  H 0 1 N N N N N N 14.318 9.636  18.906 -5.207 -1.540 -1.563 H2  9KX 32 
9KX H3  H3  H 0 1 N N N N N N 15.878 6.099  19.182 -7.587 -0.472 1.316  H3  9KX 33 
9KX H4  H4  H 0 1 N N N N N N 13.290 5.618  20.619 -5.625 1.134  1.671  H4  9KX 34 
9KX H5  H5  H 0 1 N N N N N N 14.983 5.320  21.140 -5.431 -0.471 2.423  H5  9KX 35 
9KX H6  H6  H 0 1 N N N N N N 14.463 8.230  23.282 -3.708 1.859  0.655  H6  9KX 36 
9KX H7  H7  H 0 1 N N N N N N 15.011 5.159  22.968 -1.914 -0.400 -0.640 H7  9KX 37 
9KX H8  H8  H 0 1 N N N N N N 13.533 8.635  17.056 -8.092 -2.671 1.052  H8  9KX 38 
9KX H9  H9  H 0 1 N N N N N N 13.585 6.778  16.836 -6.966 -3.840 0.122  H9  9KX 39 
9KX H10 H10 H 0 1 N N N N N N 15.809 4.986  26.172 0.080  1.985  -2.085 H10 9KX 40 
9KX H11 H11 H 0 1 N N N N N N 12.961 5.447  28.276 1.763  3.715  0.659  H11 9KX 41 
9KX H12 H12 H 0 1 N N N N N N 14.691 5.835  27.988 0.933  3.837  -0.915 H12 9KX 42 
9KX H13 H13 H 0 1 N N N N N N 13.333 7.783  27.490 -0.362 3.069  1.746  H13 9KX 43 
9KX H14 H14 H 0 1 N N N N N N 12.290 6.819  26.390 -0.538 4.633  0.925  H14 9KX 44 
9KX H15 H15 H 0 1 N N N N N N 15.182 7.671  26.034 -1.744 3.643  -0.903 H15 9KX 45 
9KX H16 H16 H 0 1 N N N N N N 13.774 7.967  24.959 -2.470 3.018  0.594  H16 9KX 46 
9KX H17 H17 H 0 1 N N N N N N 14.492 3.370  23.985 0.170  -0.700 -0.599 H17 9KX 47 
9KX H18 H18 H 0 1 N N N N N N 16.192 3.364  24.565 0.027  -0.425 -2.367 H18 9KX 48 
9KX H19 H19 H 0 1 N N N N N N 14.008 1.745  25.485 2.472  -0.821 -1.096 H19 9KX 49 
9KX H20 H20 H 0 1 N N N N N N 15.681 1.816  26.137 2.297  0.150  -2.586 H20 9KX 50 
9KX H21 H21 H 0 1 N N N N N N 15.150 3.378  27.751 2.821  2.076  -1.433 H21 9KX 51 
9KX H22 H22 H 0 1 N N N N N N 11.701 4.159  26.565 1.021  0.066  1.066  H22 9KX 52 
9KX H23 H23 H 0 1 N N N N N N 12.268 5.289  25.290 1.546  1.528  1.936  H23 9KX 53 
9KX H24 H24 H 0 1 N N N N N N 12.565 3.526  25.124 -0.169 1.315  1.508  H24 9KX 54 
9KX H25 H25 H 0 1 N N N N N N 12.694 3.190  28.550 2.945  0.293  1.050  H25 9KX 55 
9KX H26 H26 H 0 1 N N N N N N 14.623 2.010  29.557 2.949  2.675  1.603  H26 9KX 56 
9KX H27 H27 H 0 1 N N N N N N 13.144 0.991  29.549 4.597  2.032  1.803  H27 9KX 57 
9KX H28 H28 H 0 1 N N N N N N 14.444 0.695  28.346 4.185  2.994  0.362  H28 9KX 58 
9KX H29 H29 H 0 1 N N N N N N 10.590 3.189  27.310 5.065  -0.861 1.469  H29 9KX 59 
9KX H30 H30 H 0 1 N N N N N N 10.204 0.174  27.116 6.768  -0.907 -1.089 H30 9KX 60 
9KX H31 H31 H 0 1 N N N N N N 8.267  2.586  27.725 6.936  -2.415 1.678  H31 9KX 61 
9KX H32 H32 H 0 1 N N N N N N 7.789  -0.329 26.918 8.621  -2.452 -0.871 H32 9KX 62 
9KX H33 H33 H 0 1 N N N N N N 5.456  0.303  27.186 9.955  -4.076 0.315  H33 9KX 63 
9KX H34 H34 H 0 1 N N N N N N 5.995  1.485  28.427 9.493  -3.262 1.829  H34 9KX 64 
9KX H35 H35 H 0 1 N N N N N N 5.926  1.966  26.697 8.478  -4.571 1.177  H35 9KX 65 
9KX H36 H36 H 0 1 N N N N N N 14.429 4.305  18.755 -7.677 0.126  -1.002 H36 9KX 66 
9KX H37 H37 H 0 1 N N N N N N 14.351 9.470  21.445 -3.757 -2.210 1.039  H37 9KX 67 
9KX H38 H38 H 0 1 N N N N N N 12.914 8.758  20.636 -3.053 -1.536 -0.455 H38 9KX 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9KX C9  C2  DOUB N N 1  
9KX O   C3  SING N N 2  
9KX C2  C3  SING N N 3  
9KX C2  C1  SING N N 4  
9KX C3  C4  SING N N 5  
9KX C1  O1  SING N N 6  
9KX C1  C   SING N N 7  
9KX C4  C5  SING N N 8  
9KX C   C5  SING N N 9  
9KX C5  C6  DOUB N N 10 
9KX C6  C7  SING N N 11 
9KX C7  C8  DOUB N E 12 
9KX C8  C10 SING N N 13 
9KX C8  C14 SING N N 14 
9KX C15 C10 SING N N 15 
9KX C15 C16 SING N N 16 
9KX C10 C11 SING N N 17 
9KX C14 C13 SING N N 18 
9KX C18 C11 SING N N 19 
9KX C16 C17 SING N N 20 
9KX O2  C21 DOUB N N 21 
9KX C11 C17 SING N N 22 
9KX C11 C12 SING N N 23 
9KX C13 C12 SING N N 24 
9KX C21 C22 SING N N 25 
9KX C21 C19 SING N N 26 
9KX C17 C19 SING N N 27 
9KX C25 C26 SING N N 28 
9KX C25 C24 DOUB N E 29 
9KX C22 C23 DOUB N E 30 
9KX C23 C24 SING N N 31 
9KX C19 C20 SING N N 32 
9KX O1  H1  SING N N 33 
9KX C1  H2  SING N N 34 
9KX C3  H3  SING N N 35 
9KX C4  H4  SING N N 36 
9KX C4  H5  SING N N 37 
9KX C6  H6  SING N N 38 
9KX C7  H7  SING N N 39 
9KX C9  H8  SING N N 40 
9KX C9  H9  SING N N 41 
9KX C10 H10 SING N N 42 
9KX C12 H11 SING N N 43 
9KX C12 H12 SING N N 44 
9KX C13 H13 SING N N 45 
9KX C13 H14 SING N N 46 
9KX C14 H15 SING N N 47 
9KX C14 H16 SING N N 48 
9KX C15 H17 SING N N 49 
9KX C15 H18 SING N N 50 
9KX C16 H19 SING N N 51 
9KX C16 H20 SING N N 52 
9KX C17 H21 SING N N 53 
9KX C18 H22 SING N N 54 
9KX C18 H23 SING N N 55 
9KX C18 H24 SING N N 56 
9KX C19 H25 SING N N 57 
9KX C20 H26 SING N N 58 
9KX C20 H27 SING N N 59 
9KX C20 H28 SING N N 60 
9KX C22 H29 SING N N 61 
9KX C23 H30 SING N N 62 
9KX C24 H31 SING N N 63 
9KX C25 H32 SING N N 64 
9KX C26 H33 SING N N 65 
9KX C26 H34 SING N N 66 
9KX C26 H35 SING N N 67 
9KX O   H36 SING N N 68 
9KX C   H37 SING N N 69 
9KX C   H38 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9KX SMILES           ACDLabs              12.01 "OC\1CC(/CC(C/1=C)O)=C/C=C3/C2C(C(CC2)C(C)C(=O)\C=C\[C@H]=CC)(CCC3)C"                                                                                                                                                   
9KX InChI            InChI                1.03  "InChI=1S/C27H38O3/c1-5-6-7-10-24(28)18(2)22-13-14-23-21(9-8-15-27(22,23)4)12-11-20-16-25(29)19(3)26(30)17-20/h5-7,10-12,18,22-23,25-26,29-30H,3,8-9,13-17H2,1-2,4H3/b6-5+,10-7+,21-12+/t18-,22+,23-,25+,26+,27+/m0/s1" 
9KX InChIKey         InChI                1.03  NXEUFUPQFMVYDT-SVJWBRFGSA-N                                                                                                                                                                                             
9KX SMILES_CANONICAL CACTVS               3.385 "C/C=C/C=C/C(=O)[C@@H](C)[C@H]1CC[C@H]2\C(CCC[C@]12C)=C\C=C/3C[C@@H](O)C(=C)[C@H](O)C/3"                                                                                                                                
9KX SMILES           CACTVS               3.385 "CC=CC=CC(=O)[CH](C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C(=C)[CH](O)C3"                                                                                                                                               
9KX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C/C=C/C=C/C(=O)[C@@H](C)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C3C[C@H](C(=C)[C@@H](C3)O)O)C"                                                                                                                               
9KX SMILES           "OpenEye OEToolkits" 2.0.6 "CC=CC=CC(=O)C(C)C1CCC2C1(CCCC2=CC=C3CC(C(=C)C(C3)O)O)C"                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9KX "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,4E,6E)-2-[(1R,3R,7E,17beta)-1,3-dihydroxy-2-methylidene-9,10-secoestra-5,7-dien-17-yl]octa-4,6-dien-3-one"                                                                                                       
9KX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S},4~{E},6~{E})-2-[(1~{R},3~{a}~{S},4~{E},7~{a}~{R})-7~{a}-methyl-4-[2-[(3~{R},5~{R})-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]octa-4,6-dien-3-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9KX "Create component"   2018-05-22 PDBJ 
9KX "Modify name"        2018-07-05 PDBJ 
9KX "Initial release"    2018-07-18 RCSB 
9KX "Other modification" 2019-09-06 PDBJ 
9KX "Other modification" 2019-09-17 PDBJ 
9KX "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9KX 
_pdbx_chem_comp_pcm.modified_residue_id                HIS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C23 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
