data_8OX
#

_chem_comp.id                                   8OX
_chem_comp.name                                 "6-azanyl-9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-7H-purin-8-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H13 N5 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        8-oxoadenosine
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-05-19
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       283.241
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8OX
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3MWL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8OX  O50   O50   O  0  1  N  N  N  15.020  12.056  31.071   4.113   2.053   1.561  O50   8OX   1  
8OX  C50   C50   C  0  1  N  N  N  16.208  11.513  30.489   4.035   1.251   0.380  C50   8OX   2  
8OX  C40   C40   C  0  1  N  N  R  15.870  10.535  29.353   3.095   0.070   0.627  C40   8OX   3  
8OX  O40   O40   O  0  1  N  N  N  14.494  10.145  29.353   1.751   0.545   0.812  O40   8OX   4  
8OX  C30   C30   C  0  1  N  N  S  16.148  11.072  27.955   3.088  -0.860  -0.601  C30   8OX   5  
8OX  O30   O30   O  0  1  N  N  N  17.548  11.091  27.677   3.531  -2.170  -0.241  O30   8OX   6  
8OX  C20   C20   C  0  1  N  N  R  15.395   9.994  27.177   1.605  -0.893  -1.044  C20   8OX   7  
8OX  O20   O20   O  0  1  N  N  N  16.138   8.775  27.125   1.215  -2.214  -1.425  O20   8OX   8  
8OX  C10   C10   C  0  1  N  N  R  14.120   9.801  28.007   0.871  -0.451   0.248  C10   8OX   9  
8OX  N9    N9    N  0  1  N  N  N  12.947  10.599  27.520  -0.433   0.135  -0.074  N9    8OX  10  
8OX  C8    C8    C  0  1  N  N  N  12.927  11.791  26.716  -0.637   1.227  -0.836  C8    8OX  11  
8OX  O8    O8    O  0  1  N  N  N  13.891  12.407  26.219   0.238   1.884  -1.369  O8    8OX  12  
8OX  N7    N7    N  0  1  N  N  N  11.581  12.195  26.527  -1.958   1.479  -0.919  N7    8OX  13  
8OX  C5    C5    C  0  1  Y  N  N  10.764  11.259  27.234  -2.630   0.510  -0.179  C5    8OX  14  
8OX  C6    C6    C  0  1  Y  N  N   9.374  11.170  27.398  -3.970   0.250   0.102  C6    8OX  15  
8OX  N6    N6    N  0  1  N  N  N   8.481  12.087  26.831  -4.972   1.065  -0.405  N6    8OX  16  
8OX  N1    N1    N  0  1  Y  N  N   8.889  10.161  28.127  -4.269  -0.797   0.869  N1    8OX  17  
8OX  C2    C2    C  0  1  Y  N  N   9.739   9.276  28.676  -3.321  -1.575   1.353  C2    8OX  18  
8OX  N3    N3    N  0  1  Y  N  N  11.063   9.319  28.548  -2.043  -1.362   1.110  N3    8OX  19  
8OX  C4    C4    C  0  1  Y  N  N  11.573  10.318  27.823  -1.660  -0.343   0.349  C4    8OX  20  
8OX  HO50  HO50  H  0  0  N  N  N  15.255  12.656  31.769   4.693   2.822   1.476  HO50  8OX  21  
8OX  H50   H50   H  0  1  N  N  N  16.815  12.336  30.083   3.653   1.854  -0.444  H50   8OX  22  
8OX  H50A  H50A  H  0  0  N  N  N  16.773  10.977  31.266   5.028   0.879   0.129  H50A  8OX  23  
8OX  H40   H40   H  0  1  N  N  N  16.535   9.684  29.565   3.417  -0.482   1.510  H40   8OX  24  
8OX  H30   H30   H  0  1  N  N  N  15.845  12.108  27.743   3.715  -0.450  -1.393  H30   8OX  25  
8OX  HO30  HO30  H  0  0  N  N  N  17.693  11.429  26.801   4.436  -2.199   0.099  HO30  8OX  26  
8OX  H20   H20   H  0  1  N  N  N  15.208  10.276  26.131   1.425  -0.187  -1.855  H20   8OX  27  
8OX  HO20  HO20  H  0  0  N  N  N  15.647   8.125  26.637   1.712  -2.569  -2.175  HO20  8OX  28  
8OX  H10   H10   H  0  1  N  N  N  13.762   8.764  27.926   0.756  -1.292   0.931  H10   8OX  29  
8OX  HN7   HN7   H  0  1  N  N  N  11.264  12.984  26.000  -2.369   2.209  -1.408  HN7   8OX  30  
8OX  HN6   HN6   H  0  1  N  N  N   7.544  11.834  27.072  -4.743   1.825  -0.963  HN6   8OX  31  
8OX  HN6A  HN6A  H  0  0  N  N  N   8.679  13.003  27.179  -5.901   0.875  -0.202  HN6A  8OX  32  
8OX  H2    H2    H  0  1  N  N  N   9.318   8.473  29.263  -3.601  -2.415   1.971  H2    8OX  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8OX  O50  C50   SING  N  N   1  
8OX  C50  C40   SING  N  N   2  
8OX  C40  O40   SING  N  N   3  
8OX  C40  C30   SING  N  N   4  
8OX  O40  C10   SING  N  N   5  
8OX  C30  O30   SING  N  N   6  
8OX  C30  C20   SING  N  N   7  
8OX  C20  O20   SING  N  N   8  
8OX  C20  C10   SING  N  N   9  
8OX  C10  N9    SING  N  N  10  
8OX  N9   C8    SING  N  N  11  
8OX  N9   C4    SING  N  N  12  
8OX  C8   O8    DOUB  N  N  13  
8OX  C8   N7    SING  N  N  14  
8OX  N7   C5    SING  N  N  15  
8OX  C5   C6    DOUB  Y  N  16  
8OX  C5   C4    SING  Y  N  17  
8OX  C6   N6    SING  N  N  18  
8OX  C6   N1    SING  Y  N  19  
8OX  N1   C2    DOUB  Y  N  20  
8OX  C2   N3    SING  Y  N  21  
8OX  N3   C4    DOUB  Y  N  22  
8OX  O50  HO50  SING  N  N  23  
8OX  C50  H50   SING  N  N  24  
8OX  C50  H50A  SING  N  N  25  
8OX  C40  H40   SING  N  N  26  
8OX  C30  H30   SING  N  N  27  
8OX  O30  HO30  SING  N  N  28  
8OX  C20  H20   SING  N  N  29  
8OX  O20  HO20  SING  N  N  30  
8OX  C10  H10   SING  N  N  31  
8OX  N7   HN7   SING  N  N  32  
8OX  N6   HN6   SING  N  N  33  
8OX  N6   HN6A  SING  N  N  34  
8OX  C2   H2    SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8OX  SMILES            ACDLabs               12.01  "O=C2Nc1c(ncnc1N2C3OC(C(O)C3O)CO)N"  
8OX  SMILES_CANONICAL  CACTVS                3.370  "Nc1ncnc2N([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)C(=O)Nc12"  
8OX  SMILES            CACTVS                3.370  "Nc1ncnc2N([CH]3O[CH](CO)[CH](O)[CH]3O)C(=O)Nc12"  
8OX  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1nc(c2c(n1)N(C(=O)N2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N"  
8OX  SMILES            "OpenEye OEToolkits"  1.7.0  "c1nc(c2c(n1)N(C(=O)N2)C3C(C(C(O3)CO)O)O)N"  
8OX  InChI             InChI                 1.03   "InChI=1S/C10H13N5O5/c11-7-4-8(13-2-12-7)15(10(19)14-4)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H,14,19)(H2,11,12,13)/t3-,5-,6-,9-/m1/s1"  
8OX  InChIKey          InChI                 1.03   UEHOMUNTZPIBIL-UUOKFMHZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8OX  "SYSTEMATIC NAME"  ACDLabs               12.01  8-oxoadenosine  
8OX  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "6-azanyl-9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-7H-purin-8-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8OX  "Create component"      2010-05-19  PDBJ  
8OX  "Modify aromatic_flag"  2011-06-04  RCSB  
8OX  "Modify descriptor"     2011-06-04  RCSB  
8OX  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8OX
_pdbx_chem_comp_synonyms.name        8-oxoadenosine
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
