data_39X
# 
_chem_comp.id                                    39X 
_chem_comp.name                                  "3-(6-fluoro-1H-benzimidazol-2-yl)-N-(naphthalen-2-ylcarbonyl)-D-alanine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H16 F N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-14 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        377.368 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     39X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4TYO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
39X O3  O1  O 0 1 N N N 16.195 -0.442 0.493  -1.168 -5.062 -0.345 O3  39X 1  
39X C21 C1  C 0 1 N N N 15.271 0.261  0.019  -0.368 -4.042 0.003  C21 39X 2  
39X O2  O2  O 0 1 N N N 14.649 0.045  -1.056 0.743  -4.262 0.425  O2  39X 3  
39X C20 C2  C 0 1 N N R 14.886 1.520  0.808  -0.855 -2.622 -0.133 C20 39X 4  
39X C12 C3  C 0 1 N N N 15.907 2.612  0.472  -2.102 -2.426 0.731  C12 39X 5  
39X C13 C4  C 0 1 Y N N 15.595 3.963  1.002  -2.660 -1.045 0.501  C13 39X 6  
39X N3  N1  N 0 1 Y N N 14.758 4.818  0.445  -1.988 0.061  0.631  N3  39X 7  
39X C15 C5  C 0 1 Y N N 14.749 5.925  1.298  -2.792 1.119  0.348  C15 39X 8  
39X C19 C6  C 0 1 Y N N 14.016 7.112  1.248  -2.592 2.502  0.330  C19 39X 9  
39X C18 C7  C 0 1 Y N N 14.188 8.063  2.245  -3.623 3.335  -0.003 C18 39X 10 
39X C17 C8  C 0 1 Y N N 15.087 7.803  3.259  -4.872 2.820  -0.326 C17 39X 11 
39X F1  F1  F 0 1 N N N 15.217 8.715  4.262  -5.879 3.660  -0.654 F1  39X 12 
39X C16 C9  C 0 1 Y N N 15.823 6.639  3.352  -5.091 1.457  -0.315 C16 39X 13 
39X C14 C10 C 0 1 Y N N 15.624 5.695  2.359  -4.055 0.598  0.022  C14 39X 14 
39X N2  N2  N 0 1 Y N N 16.124 4.425  2.154  -3.939 -0.774 0.123  N2  39X 15 
39X N1  N3  N 0 1 N N N 13.522 1.939  0.501  0.196  -1.702 0.308  N1  39X 16 
39X C1  C11 C 0 1 N N N 12.739 2.501  1.434  1.159  -1.317 -0.552 C1  39X 17 
39X O1  O3  O 0 1 N N N 13.102 2.604  2.606  1.157  -1.734 -1.694 O1  39X 18 
39X C2  C12 C 0 1 Y N N 11.434 3.085  0.975  2.219  -0.388 -0.106 C2  39X 19 
39X C7  C13 C 0 1 Y N N 10.823 4.030  1.804  2.216  0.091  1.216  C7  39X 20 
39X C6  C14 C 0 1 Y N N 9.664  4.646  1.432  3.178  0.946  1.648  C6  39X 21 
39X C5  C15 C 0 1 Y N N 9.056  4.367  0.189  4.196  1.363  0.771  C5  39X 22 
39X C11 C16 C 0 1 Y N N 7.897  5.044  -0.266 5.202  2.246  1.196  C11 39X 23 
39X C10 C17 C 0 1 Y N N 7.369  4.771  -1.491 6.174  2.632  0.324  C10 39X 24 
39X C9  C18 C 0 1 Y N N 7.950  3.822  -2.315 6.188  2.164  -0.989 C9  39X 25 
39X C8  C19 C 0 1 Y N N 9.067  3.144  -1.916 5.230  1.308  -1.437 C8  39X 26 
39X C4  C20 C 0 1 Y N N 9.656  3.402  -0.656 4.209  0.887  -0.565 C4  39X 27 
39X C3  C21 C 0 1 Y N N 10.846 2.766  -0.229 3.210  0.000  -0.993 C3  39X 28 
39X H16 H1  H 0 1 N N N 16.363 -1.176 -0.086 -0.811 -5.955 -0.241 H16 39X 29 
39X H15 H2  H 0 1 N N N 14.963 1.292  1.881  -1.100 -2.421 -1.176 H15 39X 30 
39X H9  H3  H 0 1 N N N 16.880 2.304  0.882  -2.851 -3.170 0.462  H9  39X 31 
39X H10 H4  H 0 1 N N N 15.977 2.685  -0.623 -1.837 -2.541 1.782  H10 39X 32 
39X H14 H6  H 0 1 N N N 13.321 7.289  0.441  -1.625 2.912  0.580  H14 39X 33 
39X H13 H7  H 0 1 N N N 13.630 8.987  2.227  -3.464 4.403  -0.016 H13 39X 34 
39X H12 H8  H 0 1 N N N 16.520 6.473  4.160  -6.064 1.062  -0.567 H12 39X 35 
39X H11 H9  H 0 1 N N N 16.761 3.937  2.750  -4.639 -1.424 -0.044 H11 39X 36 
39X H1  H10 H 0 1 N N N 13.164 1.804  -0.423 0.197  -1.369 1.219  H1  39X 37 
39X H4  H11 H 0 1 N N N 11.275 4.276  2.753  1.439  -0.224 1.895  H4  39X 38 
39X H3  H12 H 0 1 N N N 9.204  5.359  2.100  3.163  1.306  2.667  H3  39X 39 
39X H8  H13 H 0 1 N N N 7.428  5.784  0.365  5.205  2.618  2.210  H8  39X 40 
39X H7  H14 H 0 1 N N N 6.488  5.300  -1.823 6.946  3.311  0.654  H7  39X 41 
39X H6  H15 H 0 1 N N N 7.516  3.616  -3.282 6.970  2.486  -1.661 H6  39X 42 
39X H5  H16 H 0 1 N N N 9.505  2.404  -2.569 5.253  0.953  -2.457 H5  39X 43 
39X H2  H17 H 0 1 N N N 11.302 2.016  -0.859 3.211  -0.373 -2.006 H2  39X 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
39X C9  C8  DOUB Y N 1  
39X C9  C10 SING Y N 2  
39X C8  C4  SING Y N 3  
39X C10 C11 DOUB Y N 4  
39X O2  C21 DOUB N N 5  
39X C4  C3  DOUB Y N 6  
39X C4  C5  SING Y N 7  
39X C11 C5  SING Y N 8  
39X C3  C2  SING Y N 9  
39X C21 O3  SING N N 10 
39X C21 C20 SING N N 11 
39X C5  C6  DOUB Y N 12 
39X N3  C13 DOUB Y N 13 
39X N3  C15 SING Y N 14 
39X C12 C20 SING N N 15 
39X C12 C13 SING N N 16 
39X N1  C20 SING N N 17 
39X N1  C1  SING N N 18 
39X C2  C1  SING N N 19 
39X C2  C7  DOUB Y N 20 
39X C13 N2  SING Y N 21 
39X C19 C15 DOUB Y N 22 
39X C19 C18 SING Y N 23 
39X C15 C14 SING Y N 24 
39X C6  C7  SING Y N 25 
39X C1  O1  DOUB N N 26 
39X N2  C14 SING Y N 27 
39X C18 C17 DOUB Y N 28 
39X C14 C16 DOUB Y N 29 
39X C17 C16 SING Y N 30 
39X C17 F1  SING N N 31 
39X O3  H16 SING N N 32 
39X C20 H15 SING N N 33 
39X C12 H9  SING N N 34 
39X C12 H10 SING N N 35 
39X C19 H14 SING N N 36 
39X C18 H13 SING N N 37 
39X C16 H12 SING N N 38 
39X N2  H11 SING N N 39 
39X N1  H1  SING N N 40 
39X C7  H4  SING N N 41 
39X C6  H3  SING N N 42 
39X C11 H8  SING N N 43 
39X C10 H7  SING N N 44 
39X C9  H6  SING N N 45 
39X C8  H5  SING N N 46 
39X C3  H2  SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
39X SMILES           ACDLabs              12.01 "O=C(O)C(NC(=O)c2cc1ccccc1cc2)Cc4nc3ccc(F)cc3n4"                                                                                                                     
39X InChI            InChI                1.03  "InChI=1S/C21H16FN3O3/c22-15-7-8-16-17(10-15)24-19(23-16)11-18(21(27)28)25-20(26)14-6-5-12-3-1-2-4-13(12)9-14/h1-10,18H,11H2,(H,23,24)(H,25,26)(H,27,28)/t18-/m1/s1" 
39X InChIKey         InChI                1.03  NKMPZFCFXCJBEY-GOSISDBHSA-N                                                                                                                                          
39X SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@@H](Cc1[nH]c2cc(F)ccc2n1)NC(=O)c3ccc4ccccc4c3"                                                                                                             
39X SMILES           CACTVS               3.385 "OC(=O)[CH](Cc1[nH]c2cc(F)ccc2n1)NC(=O)c3ccc4ccccc4c3"                                                                                                               
39X SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2cc(ccc2c1)C(=O)N[C@H](Cc3[nH]c4cc(ccc4n3)F)C(=O)O"                                                                                                            
39X SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc2cc(ccc2c1)C(=O)NC(Cc3[nH]c4cc(ccc4n3)F)C(=O)O"                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
39X "SYSTEMATIC NAME" ACDLabs              12.01 "3-(6-fluoro-1H-benzimidazol-2-yl)-N-(naphthalen-2-ylcarbonyl)-D-alanine"                  
39X "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R)-3-(6-fluoranyl-1H-benzimidazol-2-yl)-2-(naphthalen-2-ylcarbonylamino)propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
39X "Create component"  2014-07-14 RCSB 
39X "Initial release"   2014-08-20 RCSB 
39X "Modify descriptor" 2014-09-05 RCSB 
# 
