data_TTW
# 
_chem_comp.id                                    TTW 
_chem_comp.name                                  "5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H18 N3 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-12-19 
_chem_comp.pdbx_modified_date                    2018-08-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        481.184 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TTW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5YYD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TTW O4    O1  O 0 1 N N N -32.571 -2.379 -15.308 -7.226 -2.803 1.463  O4    TTW 1  
TTW C4    C1  C 0 1 N N N -31.507 -2.583 -14.726 -6.488 -2.072 0.827  C4    TTW 2  
TTW N3    N1  N 0 1 N N N -30.379 -2.761 -15.438 -5.789 -1.102 1.449  N3    TTW 3  
TTW C2    C2  C 0 1 N N N -29.229 -2.997 -14.811 -4.974 -0.295 0.745  C2    TTW 4  
TTW O2    O2  O 0 1 N N N -28.238 -3.126 -15.507 -4.350 0.576  1.319  O2    TTW 5  
TTW C5    C3  C 0 1 N N N -31.481 -2.629 -13.229 -6.351 -2.239 -0.572 C5    TTW 6  
TTW C5M   C4  C 0 1 N N N -32.753 -2.424 -12.394 -7.117 -3.320 -1.291 C5M   TTW 7  
TTW C6    C5  C 0 1 N N N -30.251 -2.876 -12.637 -5.526 -1.416 -1.254 C6    TTW 8  
TTW N1    N2  N 0 1 N N N -29.131 -3.051 -13.380 -4.838 -0.440 -0.586 N1    TTW 9  
TTW "C1'" C6  C 0 1 N N R -27.821 -3.250 -12.745 -3.943 0.453  -1.326 "C1'" TTW 10 
TTW "O4'" O3  O 0 1 N N N -27.997 -4.112 -11.628 -2.639 0.449  -0.720 "O4'" TTW 11 
TTW "C2'" C7  C 0 1 N N N -27.265 -1.941 -12.149 -4.473 1.898  -1.261 "C2'" TTW 12 
TTW "C3'" C8  C 0 1 N N S -27.658 -1.955 -10.659 -3.318 2.698  -0.612 "C3'" TTW 13 
TTW "O3'" O4  O 0 1 N N N -26.778 -1.155 -9.820  -3.151 3.964  -1.253 "O3'" TTW 14 
TTW "C4'" C9  C 0 1 N N R -27.598 -3.433 -10.383 -2.098 1.779  -0.875 "C4'" TTW 15 
TTW "C5'" C10 C 0 1 N N N -28.499 -3.844 -9.194  -0.997 2.036  0.155  "C5'" TTW 16 
TTW "O5'" O5  O 0 1 N N N -29.838 -3.456 -9.561  0.119  1.186  -0.117 "O5'" TTW 17 
TTW PA    P1  P 0 1 N N N -30.954 -2.873 -8.512  1.461  1.189  0.771  PA    TTW 18 
TTW O1A   O6  O 0 1 N N N -32.295 -3.286 -9.034  2.008  2.563  0.834  O1A   TTW 19 
TTW O2A   O7  O 0 1 N N N -30.785 -3.456 -7.125  1.121  0.678  2.259  O2A   TTW 20 
TTW O3A   O8  O 0 1 N N N -30.807 -1.283 -8.490  2.549  0.208  0.103  O3A   TTW 21 
TTW PB    P2  P 0 1 N N N -29.633 -0.387 -7.754  4.134  -0.001 0.295  PB    TTW 22 
TTW O1B   O9  O 0 1 N N N -28.727 0.268  -8.784  4.414  -0.384 1.697  O1B   TTW 23 
TTW O2B   O10 O 0 1 N N N -28.820 -1.246 -6.858  4.902  1.371  -0.050 O2B   TTW 24 
TTW N3B   N3  N 0 1 N N N -30.473 0.749  -6.959  4.668  -1.219 -0.737 N3B   TTW 25 
TTW PG    P3  P 0 1 N N N -31.217 0.446  -5.485  6.324  -1.470 -0.566 PG    TTW 26 
TTW O1G   O11 O 0 1 N N N -30.356 1.079  -4.474  6.795  -2.639 -1.568 O1G   TTW 27 
TTW O2G   O12 O 0 1 N N N -31.184 -1.056 -5.321  7.112  -0.111 -0.919 O2G   TTW 28 
TTW O3G   O13 O 0 1 N N N -32.552 1.076  -5.399  6.622  -1.865 0.828  O3G   TTW 29 
TTW H1    H1  H 0 1 N N N -30.405 -2.716 -16.437 -5.875 -0.983 2.408  H1    TTW 30 
TTW H2    H2  H 0 1 N N N -32.506 -2.498 -11.325 -7.723 -3.873 -0.575 H2    TTW 31 
TTW H3    H3  H 0 1 N N N -33.174 -1.430 -12.605 -7.764 -2.868 -2.043 H3    TTW 32 
TTW H4    H4  H 0 1 N N N -33.491 -3.197 -12.654 -6.416 -4.000 -1.776 H4    TTW 33 
TTW H5    H5  H 0 1 N N N -30.184 -2.930 -11.560 -5.409 -1.528 -2.322 H5    TTW 34 
TTW H6    H6  H 0 1 N N N -27.100 -3.666 -13.464 -3.872 0.130  -2.364 H6    TTW 35 
TTW H7    H7  H 0 1 N N N -26.171 -1.906 -12.256 -4.681 2.273  -2.264 H7    TTW 36 
TTW H8    H8  H 0 1 N N N -27.710 -1.071 -12.654 -5.368 1.949  -0.641 H8    TTW 37 
TTW H9    H9  H 0 1 N N N -28.696 -1.606 -10.560 -3.486 2.825  0.458  H9    TTW 38 
TTW H10   H10 H 0 1 N N N -27.294 -0.532 -9.323  -3.924 4.541  -1.193 H10   TTW 39 
TTW H11   H11 H 0 1 N N N -26.561 -3.706 -10.139 -1.720 1.924  -1.887 H11   TTW 40 
TTW H12   H12 H 0 1 N N N -28.446 -4.931 -9.032  -0.682 3.078  0.098  H12   TTW 41 
TTW H13   H13 H 0 1 N N N -28.186 -3.321 -8.278  -1.378 1.826  1.155  H13   TTW 42 
TTW H14   H14 H 0 1 N N N -31.561 -3.952 -6.893  0.758  -0.217 2.295  H14   TTW 43 
TTW H15   H15 H 0 1 N N N -27.908 -1.203 -7.119  4.764  1.683  -0.955 H15   TTW 44 
TTW H16   H16 H 0 1 N N N -29.838 1.505  -6.801  4.155  -2.074 -0.584 H16   TTW 45 
TTW H17   H17 H 0 1 N N N -30.851 1.740  -4.004  7.740  -2.837 -1.523 H17   TTW 46 
TTW H18   H18 H 0 1 N N N -32.066 -1.379 -5.181  6.963  0.208  -1.820 H18   TTW 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TTW O2    C2    DOUB N N 1  
TTW N3    C2    SING N N 2  
TTW N3    C4    SING N N 3  
TTW O4    C4    DOUB N N 4  
TTW C2    N1    SING N N 5  
TTW C4    C5    SING N N 6  
TTW N1    "C1'" SING N N 7  
TTW N1    C6    SING N N 8  
TTW C5    C6    DOUB N N 9  
TTW C5    C5M   SING N N 10 
TTW "C1'" "C2'" SING N N 11 
TTW "C1'" "O4'" SING N N 12 
TTW "C2'" "C3'" SING N N 13 
TTW "O4'" "C4'" SING N N 14 
TTW "C3'" "C4'" SING N N 15 
TTW "C3'" "O3'" SING N N 16 
TTW "C4'" "C5'" SING N N 17 
TTW "O5'" "C5'" SING N N 18 
TTW "O5'" PA    SING N N 19 
TTW O1A   PA    DOUB N N 20 
TTW O1B   PB    DOUB N N 21 
TTW PA    O3A   SING N N 22 
TTW PA    O2A   SING N N 23 
TTW O3A   PB    SING N N 24 
TTW PB    N3B   SING N N 25 
TTW PB    O2B   SING N N 26 
TTW N3B   PG    SING N N 27 
TTW PG    O3G   DOUB N N 28 
TTW PG    O2G   SING N N 29 
TTW PG    O1G   SING N N 30 
TTW N3    H1    SING N N 31 
TTW C5M   H2    SING N N 32 
TTW C5M   H3    SING N N 33 
TTW C5M   H4    SING N N 34 
TTW C6    H5    SING N N 35 
TTW "C1'" H6    SING N N 36 
TTW "C2'" H7    SING N N 37 
TTW "C2'" H8    SING N N 38 
TTW "C3'" H9    SING N N 39 
TTW "O3'" H10   SING N N 40 
TTW "C4'" H11   SING N N 41 
TTW "C5'" H12   SING N N 42 
TTW "C5'" H13   SING N N 43 
TTW O2A   H14   SING N N 44 
TTW O2B   H15   SING N N 45 
TTW N3B   H16   SING N N 46 
TTW O1G   H17   SING N N 47 
TTW O2G   H18   SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TTW SMILES           ACDLabs              12.01 "O=C1C(=CN(C(N1)=O)C2CC(C(O2)COP(OP(NP(=O)(O)O)(O)=O)(O)=O)O)C"                                                                                                                              
TTW InChI            InChI                1.03  "InChI=1S/C10H18N3O13P3/c1-5-3-13(10(16)11-9(5)15)8-2-6(14)7(25-8)4-24-29(22,23)26-28(20,21)12-27(17,18)19/h3,6-8,14H,2,4H2,1H3,(H,22,23)(H,11,15,16)(H4,12,17,18,19,20,21)/t6-,7+,8+/m0/s1" 
TTW InChIKey         InChI                1.03  RTOWUXJWTDSUGC-XLPZGREQSA-N                                                                                                                                                                  
TTW SMILES_CANONICAL CACTVS               3.385 "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                             
TTW SMILES           CACTVS               3.385 "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2)C(=O)NC1=O"                                                                                                                 
TTW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O"                                                                                                                   
TTW SMILES           "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TTW "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine"                                                                                          
TTW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[[[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TTW "Create component" 2017-12-19 PDBJ 
TTW "Initial release"  2018-09-05 RCSB 
# 
