data_KXW
#

_chem_comp.id                                   KXW
_chem_comp.name                                 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-(pyridin-2-ylamino)propyl]amino]-2-azanyl-butanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H31 N9 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-04
_chem_comp.pdbx_modified_date                   2020-02-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       501.539
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KXW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6S79
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KXW  C02  C1   C  0  1  N  N  S  -24.634  21.070  -13.727  -1.713   2.860   1.331  C02  KXW   1  
KXW  C03  C2   C  0  1  N  N  R  -24.413  22.281  -13.527  -3.140   2.385   0.977  C03  KXW   2  
KXW  C05  C3   C  0  1  N  N  R  -22.916  22.343  -12.865  -2.927   1.390  -0.186  C05  KXW   3  
KXW  C07  C4   C  0  1  Y  N  N  -21.645  24.311  -12.088  -5.134   0.222  -0.598  C07  KXW   4  
KXW  C09  C5   C  0  1  Y  N  N  -20.667  24.859  -10.092  -7.106   0.709  -1.674  C09  KXW   5  
KXW  C11  C6   C  0  1  Y  N  N  -20.508  26.355  -11.805  -6.952  -1.360  -0.663  C11  KXW   6  
KXW  C13  C7   C  0  1  Y  N  N  -21.232  25.487  -12.629  -5.649  -1.037  -0.247  C13  KXW   7  
KXW  C15  C8   C  0  1  Y  N  N  -22.329  24.374  -14.157  -3.642  -0.911   0.562  C15  KXW   8  
KXW  C17  C9   C  0  1  N  N  R  -23.224  20.451  -13.980  -0.807   2.096   0.340  C17  KXW   9  
KXW  C18  C10  C  0  1  N  N  N  -23.026  20.191  -15.352   0.501   1.687   1.021  C18  KXW  10  
KXW  C20  C11  C  0  1  N  N  N  -21.948  18.077  -14.828   0.968  -0.069  -0.579  C20  KXW  11  
KXW  C21  C12  C  0  1  N  N  N  -22.073  16.534  -14.974   0.817  -1.123   0.520  C21  KXW  12  
KXW  C22  C13  C  0  1  N  N  S  -21.791  15.825  -13.637   0.492  -2.477  -0.114  C22  KXW  13  
KXW  C23  C14  C  0  1  N  N  N  -22.808  14.729  -13.543   0.421  -3.531   0.961  C23  KXW  14  
KXW  C27  C15  C  0  1  N  N  N  -22.492  18.518  -17.078   2.789   1.027   0.581  C27  KXW  15  
KXW  C28  C16  C  0  1  N  N  N  -23.536  18.834  -18.204   3.810   0.896  -0.551  C28  KXW  16  
KXW  C29  C17  C  0  1  N  N  N  -23.008  18.370  -19.590   5.192   0.613   0.040  C29  KXW  17  
KXW  C31  C18  C  0  1  Y  N  N  -24.091  18.434  -21.897   7.504   0.229  -0.750  C31  KXW  18  
KXW  C32  C19  C  0  1  Y  N  N  -23.836  17.068  -22.038   7.904   0.090   0.576  C32  KXW  19  
KXW  C33  C20  C  0  1  Y  N  N  -24.232  16.450  -23.223   9.234  -0.167   0.854  C33  KXW  20  
KXW  C34  C21  C  0  1  Y  N  N  -24.864  17.222  -24.195  10.123  -0.277  -0.207  C34  KXW  21  
KXW  C35  C22  C  0  1  Y  N  N  -25.085  18.585  -23.972   9.658  -0.127  -1.498  C35  KXW  22  
KXW  N06  N1   N  0  1  Y  N  N  -22.328  23.637  -13.040  -3.866   0.271  -0.078  N06  KXW  23  
KXW  N08  N2   N  0  1  Y  N  N  -21.350  24.022  -10.818  -5.891   1.055  -1.306  N08  KXW  24  
KXW  N10  N3   N  0  1  Y  N  N  -20.255  26.001  -10.562  -7.633  -0.463  -1.368  N10  KXW  25  
KXW  N12  N4   N  0  1  N  N  N  -20.022  27.622  -12.259  -7.513  -2.585  -0.347  N12  KXW  26  
KXW  N14  N5   N  0  1  Y  N  N  -21.668  25.504  -13.910  -4.689  -1.678   0.461  N14  KXW  27  
KXW  N19  N6   N  0  1  N  N  N  -23.001  18.736  -15.683   1.444   1.189   0.011  N19  KXW  28  
KXW  N26  N7   N  0  1  N  N  N  -20.462  15.293  -13.653  -0.802  -2.396  -0.805  N26  KXW  29  
KXW  N30  N8   N  0  1  N  N  N  -23.679  19.110  -20.659   6.170   0.488  -1.043  N30  KXW  30  
KXW  N36  N9   N  0  1  Y  N  N  -24.685  19.144  -22.843   8.384   0.123  -1.733  N36  KXW  31  
KXW  O01  O1   O  0  1  N  N  N  -25.215  20.323  -12.561  -1.592   4.270   1.135  O01  KXW  32  
KXW  O04  O2   O  0  1  N  N  N  -25.404  22.948  -12.693  -3.944   3.487   0.552  O04  KXW  33  
KXW  O16  O3   O  0  1  N  N  N  -22.252  21.508  -13.536  -1.568   0.926  -0.030  O16  KXW  34  
KXW  O24  O4   O  0  1  N  N  N  -24.001  14.989  -13.368   1.551  -4.069   1.449  O24  KXW  35  
KXW  O25  O5   O  0  1  N  N  N  -22.447  13.556  -13.659  -0.651  -3.892   1.384  O25  KXW  36  
KXW  H1   H1   H  0  1  N  N  N  -25.256  20.886  -14.616  -1.466   2.596   2.359  H1   KXW  37  
KXW  H2   H2   H  0  1  N  N  N  -24.345  22.832  -14.477  -3.598   1.884   1.829  H2   KXW  38  
KXW  H3   H3   H  0  1  N  N  N  -23.002  22.091  -11.798  -3.048   1.895  -1.144  H3   KXW  39  
KXW  H4   H4   H  0  1  N  N  N  -20.435  24.598   -9.070  -7.695   1.409  -2.249  H4   KXW  40  
KXW  H5   H5   H  0  1  N  N  N  -22.787  24.100  -15.096  -2.729  -1.174   1.076  H5   KXW  41  
KXW  H6   H6   H  0  1  N  N  N  -23.106  19.542  -13.371  -0.602   2.709  -0.538  H6   KXW  42  
KXW  H7   H7   H  0  1  N  N  N  -22.066  20.634  -15.656   0.933   2.551   1.527  H7   KXW  43  
KXW  H8   H8   H  0  1  N  N  N  -23.843  20.663  -15.918   0.301   0.902   1.750  H8   KXW  44  
KXW  H9   H9   H  0  1  N  N  N  -20.949  18.399  -15.158   1.686  -0.417  -1.321  H9   KXW  45  
KXW  H10  H10  H  0  1  N  N  N  -22.096  18.361  -13.776   0.002   0.097  -1.058  H10  KXW  46  
KXW  H11  H11  H  0  1  N  N  N  -23.093  16.286  -15.304   1.749  -1.199   1.080  H11  KXW  47  
KXW  H12  H12  H  0  1  N  N  N  -21.349  16.185  -15.725   0.011  -0.834   1.193  H12  KXW  48  
KXW  H13  H13  H  0  1  N  N  N  -21.923  16.536  -12.808   1.270  -2.740  -0.830  H13  KXW  49  
KXW  H14  H14  H  0  1  N  N  N  -22.191  17.464  -17.174   2.815   0.130   1.200  H14  KXW  50  
KXW  H15  H15  H  0  1  N  N  N  -21.616  19.165  -17.230   3.032   1.896   1.191  H15  KXW  51  
KXW  H16  H16  H  0  1  N  N  N  -23.719  19.918  -18.232   3.521   0.076  -1.208  H16  KXW  52  
KXW  H17  H17  H  0  1  N  N  N  -24.477  18.309  -17.982   3.841   1.825  -1.120  H17  KXW  53  
KXW  H18  H18  H  0  1  N  N  N  -23.205  17.295  -19.713   5.481   1.433   0.698  H18  KXW  54  
KXW  H19  H19  H  0  1  N  N  N  -21.925  18.553  -19.646   5.161  -0.315   0.610  H19  KXW  55  
KXW  H20  H20  H  0  1  N  N  N  -23.348  16.508  -21.254   7.185   0.182   1.377  H20  KXW  56  
KXW  H21  H21  H  0  1  N  N  N  -24.053  15.397  -23.384   9.573  -0.280   1.873  H21  KXW  57  
KXW  H22  H22  H  0  1  N  N  N  -25.184  16.768  -25.121  11.168  -0.481  -0.024  H22  KXW  58  
KXW  H23  H23  H  0  1  N  N  N  -25.583  19.181  -24.723  10.347  -0.211  -2.326  H23  KXW  59  
KXW  H24  H24  H  0  1  N  N  N  -19.532  28.077  -11.516  -8.413  -2.797  -0.640  H24  KXW  60  
KXW  H25  H25  H  0  1  N  N  N  -19.402  27.484  -13.032  -7.006  -3.232   0.168  H25  KXW  61  
KXW  H27  H27  H  0  1  N  N  N  -20.277  14.832  -12.785  -1.522  -2.054  -0.186  H27  KXW  62  
KXW  H28  H28  H  0  1  N  N  N  -20.374  14.638  -14.404  -0.734  -1.823  -1.633  H28  KXW  63  
KXW  H30  H30  H  0  1  N  N  N  -23.059  19.847  -20.929   5.887   0.587  -1.966  H30  KXW  64  
KXW  H31  H31  H  0  1  N  N  N  -26.080  20.664  -12.365  -2.184   4.797   1.689  H31  KXW  65  
KXW  H32  H32  H  0  1  N  N  N  -25.167  23.862  -12.588  -4.060   4.172   1.224  H32  KXW  66  
KXW  H33  H33  H  0  1  N  N  N  -24.502  14.182  -13.347   1.455  -4.741   2.137  H33  KXW  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KXW  C34  C35  DOUB  Y  N   1  
KXW  C34  C33  SING  Y  N   2  
KXW  C35  N36  SING  Y  N   3  
KXW  C33  C32  DOUB  Y  N   4  
KXW  N36  C31  DOUB  Y  N   5  
KXW  C32  C31  SING  Y  N   6  
KXW  C31  N30  SING  N  N   7  
KXW  N30  C29  SING  N  N   8  
KXW  C29  C28  SING  N  N   9  
KXW  C28  C27  SING  N  N  10  
KXW  C27  N19  SING  N  N  11  
KXW  N19  C18  SING  N  N  12  
KXW  N19  C20  SING  N  N  13  
KXW  C18  C17  SING  N  N  14  
KXW  C21  C20  SING  N  N  15  
KXW  C21  C22  SING  N  N  16  
KXW  C15  N14  DOUB  Y  N  17  
KXW  C15  N06  SING  Y  N  18  
KXW  C17  C02  SING  N  N  19  
KXW  C17  O16  SING  N  N  20  
KXW  N14  C13  SING  Y  N  21  
KXW  C02  C03  SING  N  N  22  
KXW  C02  O01  SING  N  N  23  
KXW  O25  C23  DOUB  N  N  24  
KXW  N26  C22  SING  N  N  25  
KXW  C22  C23  SING  N  N  26  
KXW  C23  O24  SING  N  N  27  
KXW  O16  C05  SING  N  N  28  
KXW  C03  C05  SING  N  N  29  
KXW  C03  O04  SING  N  N  30  
KXW  N06  C05  SING  N  N  31  
KXW  N06  C07  SING  Y  N  32  
KXW  C13  C07  DOUB  Y  N  33  
KXW  C13  C11  SING  Y  N  34  
KXW  N12  C11  SING  N  N  35  
KXW  C07  N08  SING  Y  N  36  
KXW  C11  N10  DOUB  Y  N  37  
KXW  N08  C09  DOUB  Y  N  38  
KXW  N10  C09  SING  Y  N  39  
KXW  C02  H1   SING  N  N  40  
KXW  C03  H2   SING  N  N  41  
KXW  C05  H3   SING  N  N  42  
KXW  C09  H4   SING  N  N  43  
KXW  C15  H5   SING  N  N  44  
KXW  C17  H6   SING  N  N  45  
KXW  C18  H7   SING  N  N  46  
KXW  C18  H8   SING  N  N  47  
KXW  C20  H9   SING  N  N  48  
KXW  C20  H10  SING  N  N  49  
KXW  C21  H11  SING  N  N  50  
KXW  C21  H12  SING  N  N  51  
KXW  C22  H13  SING  N  N  52  
KXW  C27  H14  SING  N  N  53  
KXW  C27  H15  SING  N  N  54  
KXW  C28  H16  SING  N  N  55  
KXW  C28  H17  SING  N  N  56  
KXW  C29  H18  SING  N  N  57  
KXW  C29  H19  SING  N  N  58  
KXW  C32  H20  SING  N  N  59  
KXW  C33  H21  SING  N  N  60  
KXW  C34  H22  SING  N  N  61  
KXW  C35  H23  SING  N  N  62  
KXW  N12  H24  SING  N  N  63  
KXW  N12  H25  SING  N  N  64  
KXW  N26  H27  SING  N  N  65  
KXW  N26  H28  SING  N  N  66  
KXW  N30  H30  SING  N  N  67  
KXW  O01  H31  SING  N  N  68  
KXW  O04  H32  SING  N  N  69  
KXW  O24  H33  SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KXW  InChI             InChI                 1.03   "InChI=1S/C22H31N9O5/c23-13(22(34)35)5-9-30(8-3-7-26-15-4-1-2-6-25-15)10-14-17(32)18(33)21(36-14)31-12-29-16-19(24)27-11-28-20(16)31/h1-2,4,6,11-14,17-18,21,32-33H,3,5,7-10,23H2,(H,25,26)(H,34,35)(H2,24,27,28)/t13-,14+,17+,18+,21+/m0/s1"  
KXW  InChIKey          InChI                 1.03   BVWHRNNLXISVCS-YWYKXHLWSA-N  
KXW  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCN(CCCNc1ccccn1)C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(O)=O"  
KXW  SMILES            CACTVS                3.385  "N[CH](CCN(CCCNc1ccccn1)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(O)=O"  
KXW  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccnc(c1)NCCCN(CC[C@@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"  
KXW  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccnc(c1)NCCCN(CCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          KXW
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-(pyridin-2-ylamino)propyl]amino]-2-azanyl-butanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KXW  "Create component"  2019-07-04  EBI   
KXW  "Initial release"   2020-03-04  RCSB  
##
