data_YVV
# 
_chem_comp.id                                    YVV 
_chem_comp.name                                  "N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H44 N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        632.746 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YVV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7MB3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YVV C10  C1  C 0 1 N N N N N N 12.937 -17.734 -0.121 -5.390 3.845  0.174  C10  YVV 1  
YVV C13  C2  C 0 1 N N N N N N 12.645 -22.604 -1.126 -5.881 0.254  -0.704 C13  YVV 2  
YVV C15  C3  C 0 1 N N N N N N 12.569 -24.979 -0.090 -7.153 -1.640 0.266  C15  YVV 3  
YVV C20  C4  C 0 1 N N N N N N 13.376 -26.552 1.561  -8.621 -3.386 0.959  C20  YVV 4  
YVV C21  C5  C 0 1 N N N N N N 14.758 -27.205 1.733  -8.690 -4.506 1.998  C21  YVV 5  
YVV C22  C6  C 0 1 N N N N N N 14.220 -17.931 1.900  -4.910 5.443  -1.441 C22  YVV 6  
YVV C24  C7  C 0 1 Y N N N N N 19.771 -24.652 -6.275 1.655  -4.630 -1.127 C24  YVV 7  
YVV C26  C8  C 0 1 Y N N N N N 18.286 -22.737 -5.202 0.715  -3.035 0.391  C26  YVV 8  
YVV C28  C9  C 0 1 Y N N N N N 18.579 -25.062 -3.956 -0.417 -3.554 -1.654 C28  YVV 9  
YVV C01  C10 C 0 1 N N N N N N 18.036 -19.500 -2.435 1.334  -0.338 -0.437 C01  YVV 10 
YVV C04  C11 C 0 1 N N S N N N 16.949 -21.672 -2.809 -1.088 -0.486 -0.660 C04  YVV 11 
YVV C05  C12 C 0 1 N N N N N N 17.104 -23.190 -2.867 -1.443 -1.870 -0.112 C05  YVV 12 
YVV C07  C13 C 0 1 N N R N N N 13.509 -21.363 -0.845 -4.586 1.063  -0.607 C07  YVV 13 
YVV C08  C14 C 0 1 N N N N N N 12.801 -20.036 -0.892 -4.642 2.236  -1.588 C08  YVV 14 
YVV C09  C15 C 0 1 N N S N N N 13.771 -18.895 -0.279 -5.739 3.211  -1.154 C09  YVV 15 
YVV C14  C16 C 0 1 N N N N N N 13.427 -23.897 -0.794 -5.878 -0.843 0.362  C14  YVV 16 
YVV C18  C17 C 0 1 N N N N N N 15.957 -21.533 -1.628 -2.233 0.461  -0.411 C18  YVV 17 
YVV C23  C18 C 0 1 N N N N N N 14.145 -19.272 1.176  -5.820 4.405  -2.134 C23  YVV 18 
YVV C25  C19 C 0 1 Y N N N N N 19.184 -23.242 -6.336 1.718  -3.927 0.062  C25  YVV 19 
YVV C27  C20 C 0 1 Y N N N N N 17.996 -23.652 -4.015 -0.352 -2.847 -0.468 C27  YVV 20 
YVV C29  C21 C 0 1 Y N N N N N 19.473 -25.560 -5.089 0.589  -4.442 -1.986 C29  YVV 21 
YVV C30  C22 C 0 1 N N R N N N 19.273 -18.608 -2.181 2.570  0.175  0.257  C30  YVV 22 
YVV C32  C23 C 0 1 N N N N N N 19.999 -18.391 -3.490 2.567  -0.292 1.714  C32  YVV 23 
YVV C33  C24 C 0 1 Y N N N N N 24.093 -16.512 -2.526 5.884  1.445  3.771  C33  YVV 24 
YVV C34  C25 C 0 1 Y N N N N N 23.956 -18.031 -2.641 6.025  0.225  3.138  C34  YVV 25 
YVV C35  C26 C 0 1 Y N N N N N 22.589 -18.658 -2.963 4.952  -0.337 2.472  C35  YVV 26 
YVV C36  C27 C 0 1 Y N N N N N 21.383 -17.747 -3.166 3.737  0.321  2.439  C36  YVV 27 
YVV C37  C28 C 0 1 Y N N N N N 21.510 -16.232 -3.045 3.596  1.542  3.072  C37  YVV 28 
YVV C38  C29 C 0 1 Y N N N N N 22.876 -15.605 -2.732 4.667  2.101  3.743  C38  YVV 29 
YVV C39  C30 C 0 1 N N N N N N 19.182 -16.757 -0.395 4.927  0.326  -0.339 C39  YVV 30 
YVV C40  C31 C 0 1 N N N N N N 18.555 -15.401 0.003  6.153  -0.208 -1.036 C40  YVV 31 
YVV C42  C32 C 0 1 N N N N N N 19.309 -14.731 1.169  7.332  0.734  -0.786 C42  YVV 32 
YVV C44  C33 C 0 1 N N N N N N 21.108 -13.670 0.067  9.659  1.037  -1.276 C44  YVV 33 
YVV C45  C34 C 0 1 N N N N N N 22.643 -13.534 0.090  10.790 0.427  -1.993 C45  YVV 34 
YVV C46  C35 C 0 1 N N N N N N 23.820 -13.427 0.083  11.692 -0.060 -2.565 C46  YVV 35 
YVV N02  N1  N 0 1 N N N N N N 18.154 -20.960 -2.549 0.113  0.012  0.015  N02  YVV 36 
YVV N06  N2  N 0 1 N N N N N N 14.523 -21.454 -1.923 -3.447 0.204  -0.938 N06  YVV 37 
YVV N11  N3  N 0 1 N N N N N N 13.196 -17.131 1.252  -4.934 5.095  -0.015 N11  YVV 38 
YVV N31  N4  N 0 1 N N N N N N 18.774 -17.339 -1.681 3.761  -0.344 -0.420 N31  YVV 39 
YVV O03  O1  O 0 1 N N N N N N 16.963 -18.988 -2.536 1.438  -1.065 -1.402 O03  YVV 40 
YVV O12  O2  O 0 1 N N N N N N 12.175 -17.347 -0.954 -5.509 3.305  1.254  O12  YVV 41 
YVV O16  O3  O 0 1 N N N N N N 13.141 -26.245 0.201  -7.371 -2.662 1.109  O16  YVV 42 
YVV O17  O4  O 0 1 N N N N N N 11.424 -24.758 0.188  -7.979 -1.360 -0.569 O17  YVV 43 
YVV O19  O5  O 0 1 N N N N N N 16.361 -21.549 -0.504 -2.063 1.455  0.263  O19  YVV 44 
YVV O41  O6  O 0 1 N N N N N N 19.964 -17.288 0.319  4.992  1.358  0.294  O41  YVV 45 
YVV O43  O7  O 0 1 N N N N N N 20.690 -14.703 0.922  8.494  0.227  -1.447 O43  YVV 46 
YVV H1   H1  H 0 1 N N N N N N 11.737 -22.561 -0.506 -6.734 0.913  -0.545 H1   YVV 47 
YVV H131 H2  H 0 0 N N N N N N 12.363 -22.615 -2.189 -5.952 -0.200 -1.692 H131 YVV 48 
YVV H201 H3  H 0 0 N N N N N N 13.337 -25.626 2.154  -8.674 -3.815 -0.042 H201 YVV 49 
YVV H202 H4  H 0 0 N N N N N N 12.600 -27.247 1.915  -9.457 -2.701 1.106  H202 YVV 50 
YVV H211 H5  H 0 0 N N N N N N 14.925 -27.437 2.795  -9.628 -5.049 1.885  H211 YVV 51 
YVV H212 H6  H 0 0 N N N N N N 14.801 -28.133 1.144  -7.854 -5.190 1.851  H212 YVV 52 
YVV H213 H7  H 0 0 N N N N N N 15.537 -26.512 1.383  -8.637 -4.077 2.999  H213 YVV 53 
YVV H222 H8  H 0 0 N N N N N N 14.004 -18.051 2.972  -3.894 5.374  -1.829 H222 YVV 54 
YVV H221 H9  H 0 0 N N N N N N 15.212 -17.473 1.775  -5.303 6.449  -1.591 H221 YVV 55 
YVV H241 H10 H 0 0 N N N N N N 20.401 -25.006 -7.078 2.442  -5.324 -1.386 H241 YVV 56 
YVV H261 H11 H 0 0 N N N N N N 17.863 -21.744 -5.242 0.766  -2.482 1.317  H261 YVV 57 
YVV H281 H12 H 0 0 N N N N N N 18.360 -25.705 -3.116 -1.250 -3.407 -2.325 H281 YVV 58 
YVV H041 H13 H 0 0 N N N N N N 16.469 -21.314 -3.732 -0.900 -0.557 -1.731 H041 YVV 59 
YVV H052 H14 H 0 0 N N N N N N 16.108 -23.640 -2.993 -1.543 -1.817 0.972  H052 YVV 60 
YVV H051 H15 H 0 0 N N N N N N 17.545 -23.534 -1.920 -2.385 -2.203 -0.548 H051 YVV 61 
YVV H071 H16 H 0 0 N N N N N N 13.997 -21.482 0.134  -4.471 1.444  0.408  H071 YVV 62 
YVV H082 H17 H 0 0 N N N N N N 12.553 -19.788 -1.935 -3.681 2.750  -1.595 H082 YVV 63 
YVV H081 H18 H 0 0 N N N N N N 11.876 -20.091 -0.299 -4.863 1.863  -2.588 H081 YVV 64 
YVV H091 H19 H 0 0 N N N N N N 14.656 -18.735 -0.913 -6.700 2.700  -1.092 H091 YVV 65 
YVV H142 H20 H 0 0 N N N N N N 13.816 -24.318 -1.733 -5.024 -1.502 0.203  H142 YVV 66 
YVV H141 H21 H 0 0 N N N N N N 14.267 -23.635 -0.134 -5.807 -0.389 1.351  H141 YVV 67 
YVV H232 H22 H 0 0 N N N N N N 13.373 -19.915 1.624  -6.842 4.774  -2.215 H232 YVV 68 
YVV H231 H23 H 0 0 N N N N N N 15.116 -19.788 1.208  -5.426 4.133  -3.113 H231 YVV 69 
YVV H251 H24 H 0 0 N N N N N N 19.402 -22.602 -7.178 2.551  -4.075 0.733  H251 YVV 70 
YVV H291 H25 H 0 0 N N N N N N 19.893 -26.554 -5.050 0.543  -4.988 -2.916 H291 YVV 71 
YVV H301 H26 H 0 0 N N N N N N 19.938 -19.090 -1.450 2.579  1.264  0.224  H301 YVV 72 
YVV H321 H27 H 0 0 N N N N N N 19.415 -17.718 -4.135 1.639  0.019  2.193  H321 YVV 73 
YVV H322 H28 H 0 0 N N N N N N 20.145 -19.354 -4.001 2.648  -1.378 1.747  H322 YVV 74 
YVV H331 H29 H 0 0 N N N N N N 25.054 -16.076 -2.298 6.722  1.885  4.291  H331 YVV 75 
YVV H341 H30 H 0 0 N N N N N N 24.819 -18.663 -2.496 6.975  -0.290 3.164  H341 YVV 76 
YVV H351 H31 H 0 0 N N N N N N 22.485 -19.730 -3.044 5.063  -1.291 1.977  H351 YVV 77 
YVV H371 H32 H 0 0 N N N N N N 20.643 -15.603 -3.179 2.647  2.056  3.046  H371 YVV 78 
YVV H381 H33 H 0 0 N N N N N N 22.978 -14.532 -2.658 4.557  3.055  4.237  H381 YVV 79 
YVV H402 H34 H 0 0 N N N N N N 18.581 -14.730 -0.868 6.390  -1.198 -0.646 H402 YVV 80 
YVV H401 H35 H 0 0 N N N N N N 17.511 -15.569 0.306  5.962  -0.275 -2.107 H401 YVV 81 
YVV H422 H36 H 0 0 N N N N N N 18.944 -13.700 1.289  7.095  1.724  -1.176 H422 YVV 82 
YVV H421 H37 H 0 0 N N N N N N 19.120 -15.297 2.093  7.523  0.801  0.285  H421 YVV 83 
YVV H442 H38 H 0 0 N N N N N N 20.656 -12.723 0.397  9.898  1.111  -0.215 H442 YVV 84 
YVV H441 H39 H 0 0 N N N N N N 20.780 -13.895 -0.959 9.470  2.034  -1.676 H441 YVV 85 
YVV H461 H40 H 0 0 N N N N N N 24.876 -13.331 0.077  12.499 -0.495 -3.077 H461 YVV 86 
YVV H021 H41 H 0 0 N N N N N N 19.032 -21.428 -2.449 0.030  0.594  0.787  H021 YVV 87 
YVV H061 H42 H 0 0 N N N N N N 14.221 -21.462 -2.876 -3.566 -0.550 -1.536 H061 YVV 88 
YVV H111 H43 H 0 0 N N N N N N 12.742 -16.328 1.639  -4.656 5.690  0.698  H111 YVV 89 
YVV H311 H44 H 0 0 N N N N N N 18.118 -16.834 -2.242 3.709  -1.170 -0.927 H311 YVV 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YVV C25 C24  DOUB Y N 1  
YVV C25 C26  SING Y N 2  
YVV C24 C29  SING Y N 3  
YVV C26 C27  DOUB Y N 4  
YVV C29 C28  DOUB Y N 5  
YVV C27 C28  SING Y N 6  
YVV C27 C05  SING N N 7  
YVV C32 C36  SING N N 8  
YVV C32 C30  SING N N 9  
YVV C36 C37  DOUB Y N 10 
YVV C36 C35  SING Y N 11 
YVV C37 C38  SING Y N 12 
YVV C35 C34  DOUB Y N 13 
YVV C05 C04  SING N N 14 
YVV C04 N02  SING N N 15 
YVV C04 C18  SING N N 16 
YVV C38 C33  DOUB Y N 17 
YVV C34 C33  SING Y N 18 
YVV N02 C01  SING N N 19 
YVV O03 C01  DOUB N N 20 
YVV C01 C30  SING N N 21 
YVV C30 N31  SING N N 22 
YVV N06 C18  SING N N 23 
YVV N06 C07  SING N N 24 
YVV N31 C39  SING N N 25 
YVV C18 O19  DOUB N N 26 
YVV C13 C07  SING N N 27 
YVV C13 C14  SING N N 28 
YVV O12 C10  DOUB N N 29 
YVV C08 C07  SING N N 30 
YVV C08 C09  SING N N 31 
YVV C14 C15  SING N N 32 
YVV C39 C40  SING N N 33 
YVV C39 O41  DOUB N N 34 
YVV C09 C10  SING N N 35 
YVV C09 C23  SING N N 36 
YVV C10 N11  SING N N 37 
YVV C15 O17  DOUB N N 38 
YVV C15 O16  SING N N 39 
YVV C40 C42  SING N N 40 
YVV C44 C45  SING N N 41 
YVV C44 O43  SING N N 42 
YVV C46 C45  TRIP N N 43 
YVV O16 C20  SING N N 44 
YVV O43 C42  SING N N 45 
YVV C23 C22  SING N N 46 
YVV N11 C22  SING N N 47 
YVV C20 C21  SING N N 48 
YVV C13 H1   SING N N 49 
YVV C13 H131 SING N N 50 
YVV C20 H201 SING N N 51 
YVV C20 H202 SING N N 52 
YVV C21 H211 SING N N 53 
YVV C21 H212 SING N N 54 
YVV C21 H213 SING N N 55 
YVV C22 H222 SING N N 56 
YVV C22 H221 SING N N 57 
YVV C24 H241 SING N N 58 
YVV C26 H261 SING N N 59 
YVV C28 H281 SING N N 60 
YVV C04 H041 SING N N 61 
YVV C05 H052 SING N N 62 
YVV C05 H051 SING N N 63 
YVV C07 H071 SING N N 64 
YVV C08 H082 SING N N 65 
YVV C08 H081 SING N N 66 
YVV C09 H091 SING N N 67 
YVV C14 H142 SING N N 68 
YVV C14 H141 SING N N 69 
YVV C23 H232 SING N N 70 
YVV C23 H231 SING N N 71 
YVV C25 H251 SING N N 72 
YVV C29 H291 SING N N 73 
YVV C30 H301 SING N N 74 
YVV C32 H321 SING N N 75 
YVV C32 H322 SING N N 76 
YVV C33 H331 SING N N 77 
YVV C34 H341 SING N N 78 
YVV C35 H351 SING N N 79 
YVV C37 H371 SING N N 80 
YVV C38 H381 SING N N 81 
YVV C40 H402 SING N N 82 
YVV C40 H401 SING N N 83 
YVV C42 H422 SING N N 84 
YVV C42 H421 SING N N 85 
YVV C44 H442 SING N N 86 
YVV C44 H441 SING N N 87 
YVV C46 H461 SING N N 88 
YVV N02 H021 SING N N 89 
YVV N06 H061 SING N N 90 
YVV N11 H111 SING N N 91 
YVV N31 H311 SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YVV SMILES           ACDLabs              12.01 "C#CCOCCC(=O)NC(Cc1ccccc1)C(=O)NC(Cc1ccccc1)C(=O)NC(CC1CCNC1=O)CCC(=O)OCC"                                                                                                                                                                                
YVV InChI            InChI                1.03  "InChI=1S/C35H44N4O7/c1-3-20-45-21-18-31(40)38-29(22-25-11-7-5-8-12-25)35(44)39-30(23-26-13-9-6-10-14-26)34(43)37-28(15-16-32(41)46-4-2)24-27-17-19-36-33(27)42/h1,5-14,27-30H,4,15-24H2,2H3,(H,36,42)(H,37,43)(H,38,40)(H,39,44)/t27-,28+,29+,30-/m0/s1" 
YVV InChIKey         InChI                1.03  DFVBMNVNJFHZTI-KJHMZRPRSA-N                                                                                                                                                                                                                               
YVV SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](Cc3ccccc3)NC(=O)CCOCC#C"                                                                                                                                                              
YVV SMILES           CACTVS               3.385 "CCOC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](Cc3ccccc3)NC(=O)CCOCC#C"                                                                                                                                                                    
YVV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](Cc3ccccc3)NC(=O)CCOCC#C"                                                                                                                                                              
YVV SMILES           "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CCC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)C(Cc3ccccc3)NC(=O)CCOCC#C"                                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YVV "SYSTEMATIC NAME" ACDLabs              12.01 "N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide"                                      
YVV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "ethyl (4~{R})-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[[(2~{S})-3-phenyl-2-[[(2~{R})-3-phenyl-2-(3-prop-2-ynoxypropanoylamino)propanoyl]amino]propanoyl]amino]pentanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YVV "Create component" 2021-04-01 RCSB 
YVV "Initial release"  2022-10-12 RCSB 
YVV "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YVV 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
