data_VDV
#

_chem_comp.id                                   VDV
_chem_comp.name                                 alpha-D-allofuranose
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C6 H12 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-30
_chem_comp.pdbx_modified_date                   2021-05-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       180.156
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VDV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6X7T
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VDV  C4   C1   C  0  1  N  N  S  22.906   0.463  69.110   0.723  -0.972   0.219  C4   VDV   1  
VDV  C5   C2   C  0  1  N  N  R  23.752  -0.188  70.099   1.781  -0.089   0.924  C5   VDV   2  
VDV  C6   C3   C  0  1  N  N  S  23.027  -0.908  71.122   1.540   1.294   0.267  C6   VDV   3  
VDV  C1   C4   C  0  1  N  N  N  20.250  -0.335  67.479  -2.715   0.724  -0.267  C1   VDV   4  
VDV  C2   C5   C  0  1  N  N  R  20.702  -0.939  68.810  -1.693  -0.280   0.269  C2   VDV   5  
VDV  C3   C6   C  0  1  N  N  R  21.621  -0.112  69.584  -0.314   0.035  -0.315  C3   VDV   6  
VDV  O1   O1   O  0  1  N  N  N  21.680  -0.378  71.037   0.106   1.344   0.103  O1   VDV   7  
VDV  O2   O2   O  0  1  N  N  N  23.508  -0.981  72.347   2.194   1.369  -1.001  O2   VDV   8  
VDV  O3   O3   O  0  1  N  N  N  25.095   0.198  70.301   3.102  -0.559   0.652  O3   VDV   9  
VDV  O4   O4   O  0  1  N  N  N  22.977   1.835  69.485   1.317  -1.698  -0.860  O4   VDV  10  
VDV  O5   O5   O  0  1  N  N  N  21.557  -2.026  68.598  -2.080  -1.602  -0.111  O5   VDV  11  
VDV  O6   O6   O  0  1  N  N  N  19.399   0.738  67.712  -3.977   0.503   0.366  O6   VDV  12  
VDV  H5   H1   H  0  1  N  N  N  23.151   0.239  68.061   0.260  -1.657   0.929  H5   VDV  13  
VDV  H6   H2   H  0  1  N  N  N  23.980  -1.071  69.484   1.598  -0.046   1.998  H6   VDV  14  
VDV  H7   H3   H  0  1  N  N  N  22.953  -1.940  70.750   1.882   2.095   0.922  H7   VDV  15  
VDV  H2   H4   H  0  1  N  N  N  19.720  -1.100  66.892  -2.375   1.738  -0.055  H2   VDV  16  
VDV  H1   H5   H  0  1  N  N  N  21.130   0.013  66.918  -2.822   0.595  -1.344  H1   VDV  17  
VDV  H3   H6   H  0  1  N  N  N  19.825  -1.219  69.411  -1.652  -0.212   1.356  H3   VDV  18  
VDV  H4   H7   H  0  1  N  N  N  21.028   0.814  69.611  -0.353  -0.014  -1.403  H4   VDV  19  
VDV  H8   H8   H  0  1  N  N  N  22.915  -1.485  72.891   2.075   2.214  -1.456  H8   VDV  20  
VDV  H9   H9   H  0  1  N  N  N  25.480  -0.339  70.983   3.800  -0.038   1.073  H9   VDV  21  
VDV  H10  H10  H  0  1  N  N  N  23.798   2.204  69.183   1.978  -2.346  -0.581  H10  VDV  22  
VDV  H11  H11  H  0  1  N  N  N  21.826  -2.386  69.435  -2.138  -1.736  -1.067  H11  VDV  23  
VDV  H12  H12  H  0  1  N  N  N  19.122   1.109  66.882  -4.675   1.106   0.074  H12  VDV  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VDV  C1  O6   SING  N  N   1  
VDV  C1  C2   SING  N  N   2  
VDV  O5  C2   SING  N  N   3  
VDV  C2  C3   SING  N  N   4  
VDV  C4  O4   SING  N  N   5  
VDV  C4  C3   SING  N  N   6  
VDV  C4  C5   SING  N  N   7  
VDV  C3  O1   SING  N  N   8  
VDV  C5  O3   SING  N  N   9  
VDV  C5  C6   SING  N  N  10  
VDV  O1  C6   SING  N  N  11  
VDV  C6  O2   SING  N  N  12  
VDV  C4  H5   SING  N  N  13  
VDV  C5  H6   SING  N  N  14  
VDV  C6  H7   SING  N  N  15  
VDV  C1  H2   SING  N  N  16  
VDV  C1  H1   SING  N  N  17  
VDV  C2  H3   SING  N  N  18  
VDV  C3  H4   SING  N  N  19  
VDV  O2  H8   SING  N  N  20  
VDV  O3  H9   SING  N  N  21  
VDV  O4  H10  SING  N  N  22  
VDV  O5  H11  SING  N  N  23  
VDV  O6  H12  SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VDV  SMILES            ACDLabs               12.01  "C1(O)C(C(CO)O)OC(C1O)O"  
VDV  InChI             InChI                 1.03   "InChI=1S/C6H12O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2-11H,1H2/t2-,3+,4-,5-,6+/m1/s1"  
VDV  InChIKey          InChI                 1.03   AVVWPBAENSWJCB-RXRWUWDJSA-N  
VDV  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@H](O)[C@H]1O[C@H](O)[C@H](O)[C@@H]1O"  
VDV  SMILES            CACTVS                3.385  "OC[CH](O)[CH]1O[CH](O)[CH](O)[CH]1O"  
VDV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C([C@H]([C@@H]1[C@H]([C@H]([C@H](O1)O)O)O)O)O"  
VDV  SMILES            "OpenEye OEToolkits"  2.0.7  "C(C(C1C(C(C(O1)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VDV  "SYSTEMATIC NAME"  ACDLabs               12.01  alpha-D-allofuranose  
VDV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S},3~{R},4~{S},5~{R})-5-[(1~{R})-1,2-bis(oxidanyl)ethyl]oxolane-2,3,4-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VDV  "Create component"  2020-07-30  RCSB  
VDV  "Initial release"   2021-06-02  RCSB  
##
